Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001522

Physical Location & Seq

Genomic Coordinates Reverse (-)

66755874 .. 66756573

Gene Structure 700 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015497

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGAAGCCGCTTCAGCTCAAAAGGGTGAAGCTTCCAAAGGGGTCCAAGCTTCCCAAAACGCAGAAGAAGATGGTGATGAATGAGCAGGTTGTGATCAAAACCTTGACCTCAATCAACCATCCGGTTCTTCCCACACCTCCCAGCCTCAACCTGCAAACCAATACTCTTCTCGGCGAAGTAGCGGCCCTCGCCACGCGCGGCCAACTCAACGAAGCTCTCTCACTCTTCCACACTCTTCAACCGCCACCCTCTCACTGCAACCAAACCTATGCCACTCTCTTCCACGCATGTGCTCGCCACCACTTCCTCCAACAAGGCCTCCCATTACTCCTCACCCCAACCTCTTTGTCTCCAACCACCTCATCAATATGTACGCCAAATTTGGCTACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

131

Amino Acids

14.2

Weight (kDa)

10.04

Isoelectric Point (pI)

47.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71420
fragaria_vesca	FvH4_2g00530 FvH4_2g00530 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560
malus_domestica	MD05G1002500.v1.1
prunus_persica	Prupe.8G005700_v2.0.a1
pyrus_communis	pycom05g00240
rosa_chinensis	RchiOBHm_Chr6g0250571 RchiOBHm_Chr6g0250641 RchiOBHm_Chr6g0250661 RchiOBHm_Chr6g0250741 RchiOBHm_Chr6g0250751 RchiOBHm_Chr6g0250881 RchiOBHm_Chr6g0250901 RchiOBHm_Chr6g0250941 RchiOBHm_Chr6g0251021
rosa_laevigata	RLG00000001886 RLG00000015490 RLG00000015491 RLG00000015495 RLG00000015496 RLG00000015497 RLG00000015516 RLG00000015517 RLG00000015521 RLG00000015534
rosa_multiflora	Rmu_co8213794.1_g000001 Rmu_co8225142.1_g000001 Rmu_co8465043.1_g000001 Rmu_sc0001209.1_g000010 Rmu_sc0001209.1_g000028 Rmu_sc0001209.1_g000030 Rmu_sc0003527.1_g000008 Rmu_sc0026821.1_g000002 Rmu_sc0031313.1_g000001 Rmu_sc0037610.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217150
rosa_rugosa	Rorug05G0498000 Rorug05G0499000 Rorug05G0499100 Rorug05G0499400
rosa_samantha	Rh6AG006800 Rh6AG007100 Rh6BG003500 Rh6BG003800 Rh6DG005100
rosa_wichuraiana	Rw6G000790 Rw6G000840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	76, 159
AccII	CGCG	2 cut(s)	196, 198
AciI	CCGC	4 cut(s)	8, 182, 198, 242
AcoI	YGGCCR	1 cut(s)	199
AcsI	RAATTY	1 cut(s)	379
AfaI	GTAC	1 cut(s)	373
AgsI	TTSAA	1 cut(s)	239
AleI	CACNNNNGTG	1 cut(s)	288
AluBI	AGCT	4 cut(s)	16, 31, 49, 215
AluI	AGCT	4 cut(s)	16, 31, 49, 215
Alw21I	GWGCWC	1 cut(s)	295
Alw26I	GTCTC	1 cut(s)	354
AoxI	GGCC	3 cut(s)	183, 199, 316
ApoI	RAATTY	1 cut(s)	379
AspLEI	GCGC	1 cut(s)	198
AspS9I	GGNCC	2 cut(s)	42, 184
AsuHPI	GGTGA	3 cut(s)	37, 85, 325
AvaII	GGWCC	1 cut(s)	42
Bbv12I	GWGCWC	1 cut(s)	295
BccI	CCATC	2 cut(s)	64, 126
BclI	TGATCA	1 cut(s)	93
BcoDI	GTCTC	1 cut(s)	354
BfuAI	ACCTGC	2 cut(s)	76, 159
BisI	GCNGC	3 cut(s)	8, 183, 199
BlsI	GCNGC	3 cut(s)	9, 184, 200
Bme18I	GGWCC	1 cut(s)	42
BmgT120I	GGNCC	2 cut(s)	42, 184
BmiI	GGNNCC	1 cut(s)	43
BsaWI	WCCGGW	1 cut(s)	121
BsaXI	ACNNNNNCTCC	2 cut(s)	303, 333
BseGI	GGATG	1 cut(s)	118
BseRI	GAGGAG	1 cut(s)	320
BseYI	CCCAGC	1 cut(s)	140
Bsh1236I	CGCG	2 cut(s)	196, 198
BshFI	GGCC	3 cut(s)	185, 201, 318
BsiHKAI	GWGCWC	1 cut(s)	295
BsiSI	CCGG	1 cut(s)	122
BsmAI	GTCTC	1 cut(s)	354
BsnI	GGCC	3 cut(s)	185, 201, 318
Bsp1286I	GDGCHC	1 cut(s)	295
Bsp143I	GATC	1 cut(s)	93
BspACI	CCGC	4 cut(s)	8, 182, 198, 242
BspANI	GGCC	3 cut(s)	185, 201, 318
BspFNI	CGCG	2 cut(s)	196, 198
BspLI	GGNNCC	1 cut(s)	43
BspMI	ACCTGC	2 cut(s)	76, 159
BssMI	GATC	1 cut(s)	93
Bst6I	CTCTTC	4 cut(s)	171, 230, 240, 284
BstC8I	GCNNGC	1 cut(s)	295
BstDEI	CTNAG	1 cut(s)	390
BstF5I	GGATG	1 cut(s)	118
BstFNI	CGCG	2 cut(s)	196, 198
BstHHI	GCGC	1 cut(s)	198
BstKTI	GATC	1 cut(s)	96
BstMAI	GTCTC	1 cut(s)	354
BstMBI	GATC	1 cut(s)	93
BstMWI	GCNNNNNNNGC	2 cut(s)	13, 188
BstNSI	RCATGY	1 cut(s)	291
BstUI	CGCG	2 cut(s)	196, 198
BsuRI	GGCC	3 cut(s)	185, 201, 318
BtsCI	GGATG	1 cut(s)	118
BtsI	GCAGTG	1 cut(s)	253
BtsIMutI	CAGTG	1 cut(s)	253
BveI	ACCTGC	2 cut(s)	76, 159
Cac8I	GCNNGC	1 cut(s)	295
CfoI	GCGC	1 cut(s)	198
Cfr13I	GGNCC	2 cut(s)	42, 184
Csp6I	GTAC	1 cut(s)	372
CviAII	CATG	1 cut(s)	288
CviQI	GTAC	1 cut(s)	372
DdeI	CTNAG	1 cut(s)	390
DpnI	GATC	1 cut(s)	95
DpnII	GATC	1 cut(s)	93
EaeI	YGGCCR	1 cut(s)	199
Eam1104I	CTCTTC	4 cut(s)	171, 230, 240, 284
EarI	CTCTTC	4 cut(s)	171, 230, 240, 284
Eco147I	AGGCCT	1 cut(s)	318
Eco47I	GGWCC	1 cut(s)	42
FaeI	CATG	1 cut(s)	291
FaiI	YATR	3 cut(s)	270, 289, 370
FatI	CATG	1 cut(s)	287
FbaI	TGATCA	1 cut(s)	93
Fnu4HI	GCNGC	3 cut(s)	8, 183, 199
FokI	GGATG	1 cut(s)	105
Fsp4HI	GCNGC	3 cut(s)	8, 183, 199
GlaI	GCGC	1 cut(s)	197
GluI	GCNGC	3 cut(s)	8, 183, 199
GsaI	CCCAGC	1 cut(s)	144
HaeIII	GGCC	3 cut(s)	185, 201, 318
HapII	CCGG	1 cut(s)	122
HhaI	GCGC	1 cut(s)	198
Hin1II	CATG	1 cut(s)	291
Hin6I	GCGC	1 cut(s)	196
HinP1I	GCGC	1 cut(s)	196
HindIII	AAGCTT	2 cut(s)	29, 47
HpaII	CCGG	1 cut(s)	122
HphI	GGTGA	3 cut(s)	37, 85, 325
HpyCH4V	TGCA	2 cut(s)	154, 258
HpyF10VI	GCNNNNNNNGC	2 cut(s)	13, 188
HpyF3I	CTNAG	1 cut(s)	390
Hsp92II	CATG	1 cut(s)	291
HspAI	GCGC	1 cut(s)	196
Ksp22I	TGATCA	1 cut(s)	93
Kzo9I	GATC	1 cut(s)	93
LpnPI	CCDG	4 cut(s)	71, 135, 154, 164
MalI	GATC	1 cut(s)	95
MboI	GATC	1 cut(s)	93
MboII	GAAGA	7 cut(s)	76, 79, 119, 158, 217, 227, 271
MhlI	GDGCHC	1 cut(s)	295
MluCI	AATT	1 cut(s)	379
MmeI	TCCRAC	2 cut(s)	334, 377
MslI	CAYNNNNRTG	2 cut(s)	288, 367
MspI	CCGG	1 cut(s)	122
MvnI	CGCG	2 cut(s)	196, 198
MwoI	GCNNNNNNNGC	2 cut(s)	13, 188
NdeII	GATC	1 cut(s)	93
NlaIII	CATG	1 cut(s)	291
NlaIV	GGNNCC	1 cut(s)	43
NmeAIII	GCCGAG	1 cut(s)	150
NspI	RCATGY	1 cut(s)	291
OliI	CACNNNNGTG	1 cut(s)	288
PceI	AGGCCT	1 cut(s)	318
PkrI	GCNGC	3 cut(s)	9, 184, 200
PspFI	CCCAGC	1 cut(s)	140
PspN4I	GGNNCC	1 cut(s)	43
PspPI	GGNCC	2 cut(s)	42, 184
RsaI	GTAC	1 cut(s)	373
RsaNI	GTAC	1 cut(s)	372
RseI	CAYNNNNRTG	2 cut(s)	288, 367
SatI	GCNGC	3 cut(s)	8, 183, 199
Sau3AI	GATC	1 cut(s)	93
Sau96I	GGNCC	2 cut(s)	42, 184
SduI	GDGCHC	1 cut(s)	295
SinI	GGWCC	1 cut(s)	42
SmiMI	CAYNNNNRTG	2 cut(s)	288, 367
Sse9I	AATT	1 cut(s)	379
SseBI	AGGCCT	1 cut(s)	318
SsiI	CCGC	4 cut(s)	8, 182, 198, 242
StuI	AGGCCT	1 cut(s)	318
TasI	AATT	1 cut(s)	379
TauI	GCSGC	3 cut(s)	10, 185, 201
TscAI	CASTG	1 cut(s)	260
TspDTI	ATGAA	2 cut(s)	17, 92
TspRI	CASTG	1 cut(s)	260
VpaK11BI	GGWCC	1 cut(s)	42
XapI	RAATTY	1 cut(s)	379
XceI	RCATGY	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.