Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001522

Physical Location & Seq

Genomic Coordinates Forward (+)

22530237 .. 22531882

Gene Structure 1646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001886

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGAATCTGAAAGCCGGCCGACCAGAGACTTCGCCGGACGTCAATCACCTCCCTGAAGTAGTTCTCAACCTCATAGTGTTGCAAAGCAAAGAACCTTCACCTCAATCAACCATCCAGGTTCTTCCCATGCCTCCCAGCCTCAACCTGCAAACGAACAATCTTCTCGACAAAGTAGGGGCCCTGGCCACACGCGGCCAACTCAACGAAGCACTCTCCCTCTTCTACAGTCTTCAACCGCCACCATCTCAAACTCACTGTAACCAAACCTACGCCACTCTCTTCCACGCATGCGCTCGCCACCACTCCCTCCAACAAGGCCTCTCTCTGCACCATTTCATGCTTGCCCACAACCCCATCACTCCTCATCCCGACCTCTTTGTCTCCAACCACGTCATCAACATGTACGCCAACCTATTGATTGCAGGGTTTCAGTGGCGTGGACTTGGAGCTCAAGCTATTGATCTGTTTGTACAAATGCACGTTGATGGACTCGAGTTTAACTGTGCCACACTCGTCAGCATTTTTTCTTCCTTGAATGGAGTAAATGGCGTTGATGATATATATAGTGGTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

192

Amino Acids

20.97

Weight (kDa)

6.13

Isoelectric Point (pI)

46.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71420
fragaria_vesca	FvH4_2g00530 FvH4_2g00530 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560
malus_domestica	MD05G1002500.v1.1
prunus_persica	Prupe.8G005700_v2.0.a1
pyrus_communis	pycom05g00240
rosa_chinensis	RchiOBHm_Chr6g0250571 RchiOBHm_Chr6g0250641 RchiOBHm_Chr6g0250661 RchiOBHm_Chr6g0250741 RchiOBHm_Chr6g0250751 RchiOBHm_Chr6g0250881 RchiOBHm_Chr6g0250901 RchiOBHm_Chr6g0250941 RchiOBHm_Chr6g0251021
rosa_laevigata	RLG00000001886 RLG00000015490 RLG00000015491 RLG00000015495 RLG00000015496 RLG00000015497 RLG00000015516 RLG00000015517 RLG00000015521 RLG00000015534
rosa_multiflora	Rmu_co8213794.1_g000001 Rmu_co8225142.1_g000001 Rmu_co8465043.1_g000001 Rmu_sc0001209.1_g000010 Rmu_sc0001209.1_g000028 Rmu_sc0001209.1_g000030 Rmu_sc0003527.1_g000008 Rmu_sc0026821.1_g000002 Rmu_sc0031313.1_g000001 Rmu_sc0037610.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217150
rosa_rugosa	Rorug05G0498000 Rorug05G0499000 Rorug05G0499100 Rorug05G0499400
rosa_samantha	Rh6AG006800 Rh6AG007100 Rh6BG003500 Rh6BG003800 Rh6DG005100
rosa_wichuraiana	Rw6G000790 Rw6G000840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	377
AatII	GACGTC	1 cut(s)	42
Acc36I	ACCTGC	1 cut(s)	153
AccII	CGCG	1 cut(s)	192
AciI	CCGC	2 cut(s)	192, 236
AcoI	YGGCCR	3 cut(s)	16, 183, 193
AcuI	CTGAAG	1 cut(s)	75
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	2 cut(s)	404, 471
AflIII	ACRYGT	1 cut(s)	399
AgsI	TTSAA	2 cut(s)	233, 535
AjiI	CACGTC	1 cut(s)	391
AjnI	CCWGG	2 cut(s)	114, 180
AluBI	AGCT	2 cut(s)	449, 455
AluI	AGCT	2 cut(s)	449, 455
Alw21I	GWGCWC	1 cut(s)	451
Alw26I	GTCTC	2 cut(s)	20, 385
Ama87I	CYCGRG	1 cut(s)	491
AoxI	GGCC	5 cut(s)	16, 177, 183, 193, 316
ApaI	GGGCCC	1 cut(s)	181
Asp700I	GAANNNNTTC	1 cut(s)	60
AspLEI	GCGC	1 cut(s)	293
AspS9I	GGNCC	2 cut(s)	177, 178
AsuHPI	GGTGA	2 cut(s)	38, 90
AvaI	CYCGRG	1 cut(s)	491
BaeGI	GKGCMC	1 cut(s)	181
BalI	TGGCCA	1 cut(s)	185
BanII	GRGCYC	2 cut(s)	181, 451
BbsI	GAAGAC	1 cut(s)	221
Bbv12I	GWGCWC	1 cut(s)	451
BccI	CCATC	4 cut(s)	119, 250, 362, 479
BciT130I	CCWGG	2 cut(s)	116, 182
BcoDI	GTCTC	2 cut(s)	20, 385
BfmI	CTRYAG	1 cut(s)	223
BfuAI	ACCTGC	1 cut(s)	153
BisI	GCNGC	1 cut(s)	193
BlsI	GCNGC	1 cut(s)	194
Bme1390I	CCNGG	2 cut(s)	116, 182
BmeT110I	CYCGRG	1 cut(s)	491
BmgBI	CACGTC	1 cut(s)	391
BmgT120I	GGNCC	2 cut(s)	177, 178
BmiI	GGNNCC	2 cut(s)	178, 179
BmrFI	CCNGG	2 cut(s)	116, 182
BpiI	GAAGAC	1 cut(s)	221
BpuEI	CTTGAG	1 cut(s)	435
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	180
Bse118I	RCCGGY	1 cut(s)	14
BseBI	CCWGG	2 cut(s)	116, 182
BseDI	CCNNGG	1 cut(s)	180
BseGI	GGATG	2 cut(s)	111, 364
BseRI	GAGGAG	1 cut(s)	351
BseSI	GKGCMC	1 cut(s)	181
BseX3I	CGGCCG	1 cut(s)	16
BseYI	CCCAGC	1 cut(s)	134
BsgI	GTGCAG	1 cut(s)	311
Bsh1236I	CGCG	1 cut(s)	192
Bsh1285I	CGRYCG	1 cut(s)	19
BshFI	GGCC	5 cut(s)	18, 179, 185, 195, 318
BsiEI	CGRYCG	1 cut(s)	19
BsiHKAI	GWGCWC	1 cut(s)	451
BsiHKCI	CYCGRG	1 cut(s)	491
BsiSI	CCGG	2 cut(s)	15, 35
BsmAI	GTCTC	2 cut(s)	20, 385
BsnI	GGCC	5 cut(s)	18, 179, 185, 195, 318
BsoBI	CYCGRG	1 cut(s)	491
Bsp120I	GGGCCC	1 cut(s)	177
Bsp1286I	GDGCHC	2 cut(s)	181, 451
Bsp1407I	TGTACA	1 cut(s)	469
Bsp143I	GATC	1 cut(s)	460
BspACI	CCGC	2 cut(s)	192, 236
BspANI	GGCC	5 cut(s)	18, 179, 185, 195, 318
BspFNI	CGCG	1 cut(s)	192
BspLI	GGNNCC	2 cut(s)	178, 179
BspMI	ACCTGC	1 cut(s)	153
BsrFI	RCCGGY	1 cut(s)	14
BsrGI	TGTACA	1 cut(s)	469
BssAI	RCCGGY	1 cut(s)	14
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	1 cut(s)	460
BssNI	GRCGYC	1 cut(s)	39
Bst2UI	CCWGG	2 cut(s)	116, 182
Bst4CI	ACNGT	3 cut(s)	227, 257, 503
Bst6I	CTCTTC	2 cut(s)	224, 284
BstACI	GRCGYC	1 cut(s)	39
BstAUI	TGTACA	1 cut(s)	469
BstC8I	GCNNGC	4 cut(s)	16, 289, 295, 342
BstF5I	GGATG	2 cut(s)	111, 364
BstFNI	CGCG	1 cut(s)	192
BstHHI	GCGC	1 cut(s)	293
BstKTI	GATC	1 cut(s)	463
BstMAI	GTCTC	2 cut(s)	20, 385
BstMBI	GATC	1 cut(s)	460
BstMCI	CGRYCG	1 cut(s)	19
BstNI	CCWGG	2 cut(s)	116, 182
BstNSI	RCATGY	2 cut(s)	291, 403
BstSCI	CCNGG	2 cut(s)	114, 180
BstSFI	CTRYAG	1 cut(s)	223
BstSLI	GKGCMC	1 cut(s)	181
BstUI	CGCG	1 cut(s)	192
BstV2I	GAAGAC	1 cut(s)	221
BstZI	CGGCCG	1 cut(s)	16
BsuRI	GGCC	5 cut(s)	18, 179, 185, 195, 318
BtrI	CACGTC	1 cut(s)	391
BtsCI	GGATG	2 cut(s)	111, 364
BtsIMutI	CAGTG	2 cut(s)	253, 437
BveI	ACCTGC	1 cut(s)	153
Cac8I	GCNNGC	4 cut(s)	16, 289, 295, 342
CfoI	GCGC	1 cut(s)	293
Cfr10I	RCCGGY	1 cut(s)	14
Cfr13I	GGNCC	2 cut(s)	177, 178
Csp6I	GTAC	2 cut(s)	403, 470
CviAII	CATG	4 cut(s)	127, 288, 337, 400
CviJI	RGCY	9 cut(s)	14, 18, 138, 179, 185, 195, 318, 449, 455
CviKI_1	RGCY	9 cut(s)	14, 18, 138, 179, 185, 195, 318, 449, 455
CviQI	GTAC	2 cut(s)	403, 470
DpnI	GATC	1 cut(s)	462
DpnII	GATC	1 cut(s)	460
DrdI	GACNNNNNNGTC	1 cut(s)	377
DseDI	GACNNNNNNGTC	1 cut(s)	377
EaeI	YGGCCR	3 cut(s)	16, 183, 193
EagI	CGGCCG	1 cut(s)	16
Eam1104I	CTCTTC	2 cut(s)	224, 284
EarI	CTCTTC	2 cut(s)	224, 284
Ecl136II	GAGCTC	1 cut(s)	449
EclXI	CGGCCG	1 cut(s)	16
Eco147I	AGGCCT	1 cut(s)	318
Eco24I	GRGCYC	2 cut(s)	181, 451
Eco52I	CGGCCG	1 cut(s)	16
Eco53kI	GAGCTC	1 cut(s)	449
Eco57I	CTGAAG	1 cut(s)	75
Eco88I	CYCGRG	1 cut(s)	491
EcoICRI	GAGCTC	1 cut(s)	449
EcoO109I	RGGNCCY	2 cut(s)	177, 178
EcoRII	CCWGG	2 cut(s)	114, 180
EcoT38I	GRGCYC	2 cut(s)	181, 451
FaeI	CATG	4 cut(s)	130, 291, 340, 403
FaiI	YATR	8 cut(s)	74, 128, 289, 338, 401, 560, 562, 564
FatI	CATG	4 cut(s)	126, 287, 336, 399
Fnu4HI	GCNGC	1 cut(s)	193
FokI	GGATG	2 cut(s)	98, 351
FriOI	GRGCYC	2 cut(s)	181, 451
Fsp4HI	GCNGC	1 cut(s)	193
GlaI	GCGC	1 cut(s)	292
GluI	GCNGC	1 cut(s)	193
GsaI	CCCAGC	1 cut(s)	138
HaeIII	GGCC	5 cut(s)	18, 179, 185, 195, 318
HapII	CCGG	2 cut(s)	15, 35
HhaI	GCGC	1 cut(s)	293
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	4 cut(s)	130, 291, 340, 403
Hin6I	GCGC	1 cut(s)	291
HinP1I	GCGC	1 cut(s)	291
HinfI	GANTC	2 cut(s)	4, 489
HpaII	CCGG	2 cut(s)	15, 35
HphI	GGTGA	2 cut(s)	38, 90
Hpy166II	GTNNAC	1 cut(s)	440
Hpy188I	TCNGA	1 cut(s)	9
Hpy188III	TCNNGA	2 cut(s)	164, 368
Hpy8I	GTNNAC	1 cut(s)	440
HpyAV	CCTTC	1 cut(s)	105
HpyCH4III	ACNGT	3 cut(s)	227, 257, 503
HpyCH4IV	ACGT	3 cut(s)	39, 390, 480
HpyCH4V	TGCA	5 cut(s)	82, 148, 328, 422, 478
HpySE526I	ACGT	3 cut(s)	39, 390, 480
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	4 cut(s)	130, 291, 340, 403
HspAI	GCGC	1 cut(s)	291
KroI	GCCGGC	1 cut(s)	14
KroNI	GCCGGC	1 cut(s)	16
Kzo9I	GATC	1 cut(s)	460
LmnI	GCTCC	1 cut(s)	446
MaeII	ACGT	3 cut(s)	39, 390, 480
MaeIII	GTNAC	2 cut(s)	257, 569
MalI	GATC	1 cut(s)	462
MboI	GATC	1 cut(s)	460
MboII	GAAGA	6 cut(s)	113, 152, 211, 221, 271, 519
MhlI	GDGCHC	2 cut(s)	181, 451
MlsI	TGGCCA	1 cut(s)	185
MluNI	TGGCCA	1 cut(s)	185
MlyI	GAGTC	1 cut(s)	483
MmeI	TCCRAC	2 cut(s)	334, 408
Mox20I	TGGCCA	1 cut(s)	185
MroNI	GCCGGC	1 cut(s)	14
MroXI	GAANNNNTTC	1 cut(s)	60
MscI	TGGCCA	1 cut(s)	185
MseI	TTAA	1 cut(s)	498
MslI	CAYNNNNRTG	2 cut(s)	398, 483
Msp20I	TGGCCA	1 cut(s)	185
MspI	CCGG	2 cut(s)	15, 35
MspR9I	CCNGG	2 cut(s)	116, 182
MvaI	CCWGG	2 cut(s)	116, 182
MvnI	CGCG	1 cut(s)	192
NaeI	GCCGGC	1 cut(s)	16
NdeII	GATC	1 cut(s)	460
NgoMIV	GCCGGC	1 cut(s)	14
NlaIII	CATG	4 cut(s)	130, 291, 340, 403
NlaIV	GGNNCC	2 cut(s)	178, 179
NmuCI	GTSAC	1 cut(s)	569
NspI	RCATGY	2 cut(s)	291, 403
PaeI	GCATGC	1 cut(s)	291
PaeR7I	CTCGAG	1 cut(s)	491
PceI	AGGCCT	1 cut(s)	318
PciI	ACATGT	1 cut(s)	399
PdiI	GCCGGC	1 cut(s)	16
PdmI	GAANNNNTTC	1 cut(s)	60
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	1 cut(s)	194
PleI	GAGTC	1 cut(s)	483
PpsI	GAGTC	1 cut(s)	483
PscI	ACATGT	1 cut(s)	399
Psp124BI	GAGCTC	1 cut(s)	451
Psp6I	CCWGG	2 cut(s)	114, 180
PspFI	CCCAGC	1 cut(s)	134
PspGI	CCWGG	2 cut(s)	114, 180
PspN4I	GGNNCC	2 cut(s)	178, 179
PspOMI	GGGCCC	1 cut(s)	177
PspPI	GGNCC	2 cut(s)	177, 178
PspXI	VCTCGAGB	1 cut(s)	491
RsaI	GTAC	2 cut(s)	404, 471
RsaNI	GTAC	2 cut(s)	403, 470
RseI	CAYNNNNRTG	2 cut(s)	398, 483
SacI	GAGCTC	1 cut(s)	451
SaqAI	TTAA	1 cut(s)	498
SatI	GCNGC	1 cut(s)	193
Sau3AI	GATC	1 cut(s)	460
Sau96I	GGNCC	2 cut(s)	177, 178
SchI	GAGTC	1 cut(s)	483
ScrFI	CCNGG	2 cut(s)	116, 182
SduI	GDGCHC	2 cut(s)	181, 451
SfcI	CTRYAG	1 cut(s)	223
Sfr274I	CTCGAG	1 cut(s)	491
SlaI	CTCGAG	1 cut(s)	491
SmiMI	CAYNNNNRTG	2 cut(s)	398, 483
SmlI	CTYRAG	2 cut(s)	450, 491
SmoI	CTYRAG	2 cut(s)	450, 491
SphI	GCATGC	1 cut(s)	291
SseBI	AGGCCT	1 cut(s)	318
SsiI	CCGC	2 cut(s)	192, 236
SstI	GAGCTC	1 cut(s)	451
StuI	AGGCCT	1 cut(s)	318
StyD4I	CCNGG	2 cut(s)	114, 180
TaaI	ACNGT	3 cut(s)	227, 257, 503
TaiI	ACGT	3 cut(s)	42, 393, 483
TaqI	TCGA	2 cut(s)	165, 492
TatI	WGTACW	1 cut(s)	469
TauI	GCSGC	1 cut(s)	195
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	498
Tru9I	TTAA	1 cut(s)	498
TscAI	CASTG	2 cut(s)	260, 437
TseFI	GTSAC	1 cut(s)	569
Tsp45I	GTSAC	1 cut(s)	569
TspDTI	ATGAA	2 cut(s)	17, 325
TspRI	CASTG	2 cut(s)	260, 437
XceI	RCATGY	2 cut(s)	291, 403
XhoI	CTCGAG	1 cut(s)	491
XmnI	GAANNNNTTC	1 cut(s)	60
ZraI	GACGTC	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.