Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001841

Physical Location & Seq

Genomic Coordinates Forward (+)

1552891 .. 1555806

Gene Structure 2916 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g01780.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGCATTAGCAGCAAAAGGCAAGGTTCCAGCTATCGGCATCGATCTTGGAACTACTTACTCGTGCGTTGGGGTTTGGCAACACGATCGCGTAGAGATCATAGCCAATGATCAAGGCAACAGAACAACACCGTCCTATGTTGCTTTCACTGATACAGGCCGGTTGATCGGTGATGCTGCCAAGAACCAAGTCACCACCAATCCAATCAACACTATTTTTGTTTCGTACGCAAAGGCAGATGAAGATGGGGTAGGAGAGATGAAAACAGGTATGCTGAAGAAGCTTGGACGCTCGAAAGAGCTCGCACCTGAAAAGTCCACCCAGTTTCTCTTTCTCCGGTCACCTCAAAACGTGGCTCCGGCTGACCGGCGCGATCCGAATTGTCTCTCTAGGAAGATTTCCCAATTTCCCATATCGATCAATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169

Pfam Domains

Protein Families

HSP70

Protein Analysis

143

Amino Acids

15.44

Weight (kDa)

9.2

Isoelectric Point (pI)

33.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	11 - 73	7.6e-27	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001841)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g26910 FvH4_2g01780 FvH4_2g01930 FvH4_2g04820 FvH4_2g04841 FvH4_3g29971
malus_domestica	MD01G1129300.v1.1 MD01G1129600.v1.1
pyrus_communis	pycom04g11280 pycom07g18490 pycom12g13460 pycom14g02390
rosa_chinensis	RchiOBHm_Chr6g0244981 RchiOBHm_Chr7g0242871
rosa_laevigata	RLG00000025347
rosa_multiflora	Rmu_sc0000785.1_g000034 Rmu_sc0033687.1_g000001 Rmu_sc0036726.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255620 Rroxscaffold_6G00423680 Rroxscaffold_6G00424170
rosa_rugosa	Rorug07G0107600
rosa_samantha	Rh1BG301100 Rh1DG331900 Rh1DG332900 Rh1DG333000 Rh1DG333100 Rh1DG333400 Rh3AG068100 Rh3BG070400 Rh3BG070600 Rh3BG070700 Rh3CG068700 Rh3CG068900 Rh3CG069000 Rh3DG070500 Rh6BG014700 Rh6BG017000 Rh6BG022500 Rh6CG013700 Rh6CG021100 Rh6CG117700 Rh7AG473000 Rh7DG192400 Rh7DG193800 Rh7DG196100 Rh7DG196300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	90, 372
AclWI	GGATC	1 cut(s)	368
AcuI	CTGAAG	1 cut(s)	296
AfaI	GTAC	1 cut(s)	227
AfiI	CCNNNNNNNGG	1 cut(s)	35
AluBI	AGCT	3 cut(s)	32, 283, 301
AluI	AGCT	3 cut(s)	32, 283, 301
Alw21I	GWGCWC	1 cut(s)	303
Alw26I	GTCTC	1 cut(s)	389
AlwI	GGATC	1 cut(s)	368
AoxI	GGCC	1 cut(s)	157
ApeKI	GCWGC	2 cut(s)	11, 176
AspLEI	GCGC	1 cut(s)	372
AsuHPI	GGTGA	3 cut(s)	182, 184, 333
BanII	GRGCYC	1 cut(s)	303
BauI	CACGAG	1 cut(s)	61
Bbv12I	GWGCWC	1 cut(s)	303
BbvI	GCAGC	2 cut(s)	23, 163
BccI	CCATC	1 cut(s)	239
BcgI	CGANNNNNNTGC	2 cut(s)	68, 102
BclI	TGATCA	1 cut(s)	109
BcoDI	GTCTC	1 cut(s)	389
BfaI	CTAG	1 cut(s)	390
BisI	GCNGC	2 cut(s)	12, 177
BlsI	GCNGC	2 cut(s)	13, 178
BmiI	GGNNCC	2 cut(s)	27, 357
BmrI	ACTGGG	1 cut(s)	316
BmsI	GCATC	2 cut(s)	48, 163
BmuI	ACTGGG	1 cut(s)	316
Bsa29I	ATCGAT	2 cut(s)	42, 416
BsaWI	WCCGGW	1 cut(s)	336
Bsc4I	CCNNNNNNNGG	1 cut(s)	35
Bse118I	RCCGGY	2 cut(s)	159, 366
Bse1I	ACTGG	1 cut(s)	322
BseCI	ATCGAT	2 cut(s)	42, 416
BseLI	CCNNNNNNNGG	1 cut(s)	35
BseNI	ACTGG	1 cut(s)	322
BseXI	GCAGC	2 cut(s)	23, 163
Bsh1236I	CGCG	2 cut(s)	90, 372
Bsh1285I	CGRYCG	1 cut(s)	88
BshFI	GGCC	1 cut(s)	159
BshVI	ATCGAT	2 cut(s)	42, 416
BsiEI	CGRYCG	1 cut(s)	88
BsiHKAI	GWGCWC	1 cut(s)	303
BsiSI	CCGG	4 cut(s)	160, 337, 359, 367
BsiWI	CGTACG	1 cut(s)	225
BslI	CCNNNNNNNGG	1 cut(s)	35
BsmAI	GTCTC	1 cut(s)	389
BsnI	GGCC	1 cut(s)	159
Bsp1286I	GDGCHC	1 cut(s)	303
Bsp143I	GATC	7 cut(s)	43, 85, 96, 109, 165, 373, 417
BspANI	GGCC	1 cut(s)	159
BspDI	ATCGAT	2 cut(s)	42, 416
BspFNI	CGCG	2 cut(s)	90, 372
BspLI	GGNNCC	2 cut(s)	27, 357
BspPI	GGATC	1 cut(s)	368
BsrFI	RCCGGY	2 cut(s)	159, 366
BsrI	ACTGG	1 cut(s)	322
BssAI	RCCGGY	2 cut(s)	159, 366
BssMI	GATC	7 cut(s)	43, 85, 96, 109, 165, 373, 417
BssSI	CACGAG	1 cut(s)	61
Bst2BI	CACGAG	1 cut(s)	61
Bst4CI	ACNGT	1 cut(s)	132
BstC8I	GCNNGC	1 cut(s)	303
BstEII	GGTNACC	1 cut(s)	339
BstFNI	CGCG	2 cut(s)	90, 372
BstHHI	GCGC	1 cut(s)	372
BstKTI	GATC	7 cut(s)	46, 88, 99, 112, 168, 376, 420
BstMAI	GTCTC	1 cut(s)	389
BstMBI	GATC	7 cut(s)	43, 85, 96, 109, 165, 373, 417
BstMCI	CGRYCG	1 cut(s)	88
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 280
BstPI	GGTNACC	1 cut(s)	339
BstUI	CGCG	2 cut(s)	90, 372
BstV1I	GCAGC	2 cut(s)	23, 163
Bsu15I	ATCGAT	2 cut(s)	42, 416
BsuRI	GGCC	1 cut(s)	159
BsuTUI	ATCGAT	2 cut(s)	42, 416
BtsIMutI	CAGTG	1 cut(s)	147
Cac8I	GCNNGC	1 cut(s)	303
CfoI	GCGC	1 cut(s)	372
Cfr10I	RCCGGY	2 cut(s)	159, 366
ClaI	ATCGAT	2 cut(s)	42, 416
CseI	GACGC	1 cut(s)	297
Csp6I	GTAC	1 cut(s)	226
CviJI	RGCY	7 cut(s)	32, 104, 159, 283, 301, 356, 362
CviKI_1	RGCY	7 cut(s)	32, 104, 159, 283, 301, 356, 362
CviQI	GTAC	1 cut(s)	226
DpnI	GATC	7 cut(s)	45, 87, 98, 111, 167, 375, 419
DpnII	GATC	7 cut(s)	43, 85, 96, 109, 165, 373, 417
Ecl136II	GAGCTC	1 cut(s)	301
Eco24I	GRGCYC	1 cut(s)	303
Eco53kI	GAGCTC	1 cut(s)	301
Eco57I	CTGAAG	1 cut(s)	296
Eco91I	GGTNACC	1 cut(s)	339
EcoICRI	GAGCTC	1 cut(s)	301
EcoO65I	GGTNACC	1 cut(s)	339
EcoT38I	GRGCYC	1 cut(s)	303
FaiI	YATR	4 cut(s)	101, 138, 272, 413
FbaI	TGATCA	1 cut(s)	109
Fnu4HI	GCNGC	2 cut(s)	12, 177
FriOI	GRGCYC	1 cut(s)	303
Fsp4HI	GCNGC	2 cut(s)	12, 177
FspBI	CTAG	1 cut(s)	390
GlaI	GCGC	1 cut(s)	371
GluI	GCNGC	2 cut(s)	12, 177
HaeIII	GGCC	1 cut(s)	159
HapII	CCGG	4 cut(s)	160, 337, 359, 367
HgaI	GACGC	1 cut(s)	297
HhaI	GCGC	1 cut(s)	372
Hin6I	GCGC	1 cut(s)	370
HinP1I	GCGC	1 cut(s)	370
HindIII	AAGCTT	1 cut(s)	281
HpaII	CCGG	4 cut(s)	160, 337, 359, 367
HphI	GGTGA	3 cut(s)	182, 184, 333
Hpy166II	GTNNAC	1 cut(s)	318
Hpy188I	TCNGA	1 cut(s)	378
Hpy8I	GTNNAC	1 cut(s)	318
HpyCH4III	ACNGT	1 cut(s)	132
HpyCH4IV	ACGT	1 cut(s)	351
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 280
HpySE526I	ACGT	1 cut(s)	351
HspAI	GCGC	1 cut(s)	370
Ksp22I	TGATCA	1 cut(s)	109
Kzo9I	GATC	7 cut(s)	43, 85, 96, 109, 165, 373, 417
LmnI	GCTCC	1 cut(s)	361
LpnPI	CCDG	9 cut(s)	42, 141, 173, 252, 321, 335, 350, 372, 380
Lsp1109I	GCAGC	2 cut(s)	23, 163
LweI	GCATC	2 cut(s)	48, 163
MaeI	CTAG	1 cut(s)	390
MaeII	ACGT	1 cut(s)	351
MaeIII	GTNAC	2 cut(s)	190, 339
MalI	GATC	7 cut(s)	45, 87, 98, 111, 167, 375, 419
MboI	GATC	7 cut(s)	43, 85, 96, 109, 165, 373, 417
MboII	GAAGA	3 cut(s)	254, 289, 406
MhlI	GDGCHC	1 cut(s)	303
MluCI	AATT	2 cut(s)	379, 404
MnlI	CCTC	1 cut(s)	354
MspI	CCGG	4 cut(s)	160, 337, 359, 367
MvnI	CGCG	2 cut(s)	90, 372
MwoI	GCNNNNNNNGC	2 cut(s)	11, 280
NdeII	GATC	7 cut(s)	43, 85, 96, 109, 165, 373, 417
NlaIV	GGNNCC	2 cut(s)	27, 357
NmuCI	GTSAC	2 cut(s)	190, 339
Pfl23II	CGTACG	1 cut(s)	225
PkrI	GCNGC	2 cut(s)	13, 178
Ple19I	CGATCG	1 cut(s)	88
Psp124BI	GAGCTC	1 cut(s)	303
PspEI	GGTNACC	1 cut(s)	339
PspLI	CGTACG	1 cut(s)	225
PspN4I	GGNNCC	2 cut(s)	27, 357
PvuI	CGATCG	1 cut(s)	88
RsaI	GTAC	1 cut(s)	227
RsaNI	GTAC	1 cut(s)	226
SacI	GAGCTC	1 cut(s)	303
SatI	GCNGC	2 cut(s)	12, 177
Sau3AI	GATC	7 cut(s)	43, 85, 96, 109, 165, 373, 417
SduI	GDGCHC	1 cut(s)	303
SetI	ASST	8 cut(s)	27, 34, 271, 285, 303, 310, 346, 354
SfaNI	GCATC	2 cut(s)	48, 163
Sse9I	AATT	2 cut(s)	379, 404
SspI	AATATT	1 cut(s)	424
SspMI	CTAG	1 cut(s)	390
SstI	GAGCTC	1 cut(s)	303
TaaI	ACNGT	1 cut(s)	132
TaiI	ACGT	1 cut(s)	354
TaqI	TCGA	3 cut(s)	42, 293, 416
TasI	AATT	2 cut(s)	379, 404
TscAI	CASTG	1 cut(s)	154
TseFI	GTSAC	2 cut(s)	190, 339
TseI	GCWGC	2 cut(s)	11, 176
Tsp45I	GTSAC	2 cut(s)	190, 339
TspDTI	ATGAA	2 cut(s)	255, 275
TspRI	CASTG	1 cut(s)	154
XspI	CTAG	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.