Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001841

Physical Location & Seq

Genomic Coordinates Forward (+)

45368008 .. 45370187

Gene Structure 2180 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00424170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGAGGTGAAGAAGACCAAAGCGGTGTCATCGATATTTCTGCTTGTCTTTGTTTCAGACTTCTTGTGTGGGATAGCATTAGCCGCAAAGGGTTCATCTAATCCTTGGCCAGTGATCGGAATCAGTCGCGGAACCACCTATTCATGTGTGGGTGTGTACATAAATGGCCATGTAGAGATCATAGCAAACGACCAAGGCAATAGAATCACACCCTCTTGGGTTGCATTCACTGACACCGAGCTTCTAGTGGGAGATGCAGCAAAGAATCAAGCGCATATTAACCCAGAACGTACCCTTTTTGATATCCAGCGGCTCATAGGGAGAGAATTTAGTGATATGGAGGTTCAAAGGGAGATTAAGTTGTTGCCTTATAAGATTGTGAACATAGATGGGAAGCCTTATATTCAGGTGAAGTTTAGAGGTGAAACCAAGGTGTTTAGCCCTGAGAAAATCAGTGCTATGATATTGACTAAGATGAAGGAAACAGCTGAGGCTTATTTGGGGAAGAAGATCAAAGACGCTCTCATAACTGTTCCAGGTAATGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005788 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016592 GO:0022414 GO:0030154 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0070013 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04918 ko05020 map03060 map04141 map04918 map05020

Pfam Domains

Protein Families

HSP70

Protein Analysis

182

Amino Acids

20.15

Weight (kDa)

9.02

Isoelectric Point (pI)

19.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	38 - 179	2.3e-54	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001841)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g26910 FvH4_2g01780 FvH4_2g01930 FvH4_2g04820 FvH4_2g04841 FvH4_3g29971
malus_domestica	MD01G1129300.v1.1 MD01G1129600.v1.1
pyrus_communis	pycom04g11280 pycom07g18490 pycom12g13460 pycom14g02390
rosa_chinensis	RchiOBHm_Chr6g0244981 RchiOBHm_Chr7g0242871
rosa_laevigata	RLG00000025347
rosa_multiflora	Rmu_sc0000785.1_g000034 Rmu_sc0033687.1_g000001 Rmu_sc0036726.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255620 Rroxscaffold_6G00423680 Rroxscaffold_6G00424170
rosa_rugosa	Rorug07G0107600
rosa_samantha	Rh1BG301100 Rh1DG331900 Rh1DG332900 Rh1DG333000 Rh1DG333100 Rh1DG333400 Rh3AG068100 Rh3BG070400 Rh3BG070600 Rh3BG070700 Rh3CG068700 Rh3CG068900 Rh3CG069000 Rh3DG070500 Rh6BG014700 Rh6BG017000 Rh6BG022500 Rh6CG013700 Rh6CG021100 Rh6CG117700 Rh7AG473000 Rh7DG192400 Rh7DG193800 Rh7DG196100 Rh7DG196300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	372
AccII	CGCG	1 cut(s)	129
AciI	CCGC	4 cut(s)	23, 84, 129, 310
AcoI	YGGCCR	2 cut(s)	107, 166
AcsI	RAATTY	1 cut(s)	326
AfaI	GTAC	2 cut(s)	158, 292
AfiI	CCNNNNNNNGG	1 cut(s)	116
AgsI	TTSAA	1 cut(s)	347
AjnI	CCWGG	1 cut(s)	535
AluBI	AGCT	2 cut(s)	241, 488
AluI	AGCT	2 cut(s)	241, 488
AoxI	GGCC	2 cut(s)	107, 166
ApeKI	GCWGC	1 cut(s)	257
ApoI	RAATTY	1 cut(s)	326
AspLEI	GCGC	1 cut(s)	274
AsuHPI	GGTGA	3 cut(s)	19, 421, 434
BalI	TGGCCA	2 cut(s)	109, 168
BbsI	GAAGAC	1 cut(s)	20
BbvCI	CCTCAGC	1 cut(s)	489
BbvI	GCAGC	1 cut(s)	269
BccI	CCATC	1 cut(s)	383
BcgI	CGANNNNNNTGC	2 cut(s)	22, 56
BciT130I	CCWGG	1 cut(s)	537
BfaI	CTAG	1 cut(s)	245
BisI	GCNGC	3 cut(s)	84, 258, 311
BlsI	GCNGC	3 cut(s)	85, 259, 312
Bme1390I	CCNGG	1 cut(s)	537
BmiI	GGNNCC	1 cut(s)	133
BmrFI	CCNGG	1 cut(s)	537
BmsI	GCATC	1 cut(s)	244
BpiI	GAAGAC	1 cut(s)	20
Bpu10I	CCTNAGC	1 cut(s)	489
Bsa29I	ATCGAT	1 cut(s)	32
BsaBI	GATNNNNATC	1 cut(s)	119
BsaJI	CCNNGG	3 cut(s)	104, 193, 429
BsaXI	ACNNNNNCTCC	2 cut(s)	344, 374
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
Bse1I	ACTGG	1 cut(s)	110
Bse8I	GATNNNNATC	1 cut(s)	119
BseBI	CCWGG	1 cut(s)	537
BseCI	ATCGAT	1 cut(s)	32
BseDI	CCNNGG	3 cut(s)	104, 193, 429
BseJI	GATNNNNATC	1 cut(s)	119
BseLI	CCNNNNNNNGG	1 cut(s)	116
BseMII	CTCAG	2 cut(s)	435, 480
BseNI	ACTGG	1 cut(s)	110
BseXI	GCAGC	1 cut(s)	269
Bsh1236I	CGCG	1 cut(s)	129
BshFI	GGCC	2 cut(s)	109, 168
BshVI	ATCGAT	1 cut(s)	32
BslI	CCNNNNNNNGG	1 cut(s)	116
BsmI	GAATGC	1 cut(s)	224
BsnI	GGCC	2 cut(s)	109, 168
Bsp1407I	TGTACA	1 cut(s)	156
Bsp143I	GATC	3 cut(s)	114, 177, 510
BspACI	CCGC	4 cut(s)	23, 84, 129, 310
BspANI	GGCC	2 cut(s)	109, 168
BspCNI	CTCAG	2 cut(s)	436, 481
BspDI	ATCGAT	1 cut(s)	32
BspFNI	CGCG	1 cut(s)	129
BspLI	GGNNCC	1 cut(s)	133
BsrGI	TGTACA	1 cut(s)	156
BsrI	ACTGG	1 cut(s)	110
BssECI	CCNNGG	3 cut(s)	104, 193, 429
BssMI	GATC	3 cut(s)	114, 177, 510
BssT1I	CCWWGG	3 cut(s)	104, 193, 429
Bst2UI	CCWGG	1 cut(s)	537
Bst4CI	ACNGT	1 cut(s)	532
BstAUI	TGTACA	1 cut(s)	156
BstDEI	CTNAG	3 cut(s)	444, 471, 489
BstFNI	CGCG	1 cut(s)	129
BstHHI	GCGC	1 cut(s)	274
BstKTI	GATC	3 cut(s)	117, 180, 513
BstMBI	GATC	3 cut(s)	114, 177, 510
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstNI	CCWGG	1 cut(s)	537
BstSCI	CCNGG	1 cut(s)	535
BstUI	CGCG	1 cut(s)	129
BstV1I	GCAGC	1 cut(s)	269
BstV2I	GAAGAC	1 cut(s)	20
Bsu15I	ATCGAT	1 cut(s)	32
BsuRI	GGCC	2 cut(s)	109, 168
BsuTUI	ATCGAT	1 cut(s)	32
BtsIMutI	CAGTG	3 cut(s)	117, 228, 460
CfoI	GCGC	1 cut(s)	274
ClaI	ATCGAT	1 cut(s)	32
CseI	GACGC	1 cut(s)	527
Csp6I	GTAC	2 cut(s)	157, 291
CviAII	CATG	2 cut(s)	144, 170
CviJI	RGCY	9 cut(s)	83, 109, 168, 241, 313, 397, 441, 488, 494
CviKI_1	RGCY	9 cut(s)	83, 109, 168, 241, 313, 397, 441, 488, 494
CviQI	GTAC	2 cut(s)	157, 291
DdeI	CTNAG	3 cut(s)	444, 471, 489
DpnI	GATC	3 cut(s)	116, 179, 512
DpnII	GATC	3 cut(s)	114, 177, 510
EaeI	YGGCCR	2 cut(s)	107, 166
Eco130I	CCWWGG	3 cut(s)	104, 193, 429
Eco32I	GATATC	1 cut(s)	304
EcoRII	CCWGG	1 cut(s)	535
EcoRV	GATATC	1 cut(s)	304
EcoT14I	CCWWGG	3 cut(s)	104, 193, 429
ErhI	CCWWGG	3 cut(s)	104, 193, 429
FaeI	CATG	2 cut(s)	147, 173
FatI	CATG	2 cut(s)	143, 169
Fnu4HI	GCNGC	3 cut(s)	84, 258, 311
Fsp4HI	GCNGC	3 cut(s)	84, 258, 311
FspBI	CTAG	1 cut(s)	245
GlaI	GCGC	1 cut(s)	273
GluI	GCNGC	3 cut(s)	84, 258, 311
HaeIII	GGCC	2 cut(s)	109, 168
HgaI	GACGC	1 cut(s)	527
HhaI	GCGC	1 cut(s)	274
Hin1II	CATG	2 cut(s)	147, 173
Hin6I	GCGC	1 cut(s)	272
HinP1I	GCGC	1 cut(s)	272
HinfI	GANTC	3 cut(s)	120, 204, 265
HphI	GGTGA	3 cut(s)	19, 421, 434
Hpy166II	GTNNAC	2 cut(s)	157, 382
Hpy188I	TCNGA	3 cut(s)	58, 119, 548
Hpy8I	GTNNAC	2 cut(s)	157, 382
HpyAV	CCTTC	1 cut(s)	472
HpyCH4III	ACNGT	1 cut(s)	532
HpyCH4IV	ACGT	1 cut(s)	289
HpyCH4V	TGCA	2 cut(s)	224, 257
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
HpyF3I	CTNAG	3 cut(s)	444, 471, 489
HpySE526I	ACGT	1 cut(s)	289
Hsp92II	CATG	2 cut(s)	147, 173
HspAI	GCGC	1 cut(s)	272
Kzo9I	GATC	3 cut(s)	114, 177, 510
LpnPI	CCDG	6 cut(s)	123, 297, 320, 392, 456, 522
Lsp1109I	GCAGC	1 cut(s)	269
LweI	GCATC	1 cut(s)	244
MaeI	CTAG	1 cut(s)	245
MaeII	ACGT	1 cut(s)	289
MalI	GATC	3 cut(s)	116, 179, 512
MboI	GATC	3 cut(s)	114, 177, 510
MboII	GAAGA	4 cut(s)	22, 25, 517, 520
MlsI	TGGCCA	2 cut(s)	109, 168
MluCI	AATT	1 cut(s)	326
MluNI	TGGCCA	2 cut(s)	109, 168
MnlI	CCTC	4 cut(s)	223, 334, 413, 484
Mox20I	TGGCCA	2 cut(s)	109, 168
MscI	TGGCCA	2 cut(s)	109, 168
MseI	TTAA	2 cut(s)	279, 357
Msp20I	TGGCCA	2 cut(s)	109, 168
MspA1I	CMGCKG	2 cut(s)	310, 488
MspR9I	CCNGG	1 cut(s)	537
Mva1269I	GAATGC	1 cut(s)	224
MvaI	CCWGG	1 cut(s)	537
MvnI	CGCG	1 cut(s)	129
MwoI	GCNNNNNNNGC	1 cut(s)	83
NdeII	GATC	3 cut(s)	114, 177, 510
NlaIII	CATG	2 cut(s)	147, 173
NlaIV	GGNNCC	1 cut(s)	133
PctI	GAATGC	1 cut(s)	224
PfeI	GAWTC	3 cut(s)	120, 204, 265
PkrI	GCNGC	3 cut(s)	85, 259, 312
PsiI	TTATAA	1 cut(s)	372
Psp6I	CCWGG	1 cut(s)	535
PspGI	CCWGG	1 cut(s)	535
PspN4I	GGNNCC	1 cut(s)	133
PvuII	CAGCTG	1 cut(s)	488
RsaI	GTAC	2 cut(s)	158, 292
RsaNI	GTAC	2 cut(s)	157, 291
SaqAI	TTAA	2 cut(s)	279, 357
SatI	GCNGC	3 cut(s)	84, 258, 311
Sau3AI	GATC	3 cut(s)	114, 177, 510
ScrFI	CCNGG	1 cut(s)	537
SfaNI	GCATC	1 cut(s)	244
Sse9I	AATT	1 cut(s)	326
SsiI	CCGC	4 cut(s)	23, 84, 129, 310
SspMI	CTAG	1 cut(s)	245
StyD4I	CCNGG	1 cut(s)	535
StyI	CCWWGG	3 cut(s)	104, 193, 429
TaaI	ACNGT	1 cut(s)	532
TaiI	ACGT	1 cut(s)	292
TaqI	TCGA	1 cut(s)	32
TasI	AATT	1 cut(s)	326
TatI	WGTACW	1 cut(s)	156
TauI	GCSGC	2 cut(s)	86, 313
TfiI	GAWTC	3 cut(s)	120, 204, 265
Tru1I	TTAA	2 cut(s)	279, 357
Tru9I	TTAA	2 cut(s)	279, 357
TscAI	CASTG	3 cut(s)	117, 235, 460
TseI	GCWGC	1 cut(s)	257
TspDTI	ATGAA	3 cut(s)	84, 132, 491
TspRI	CASTG	3 cut(s)	117, 235, 460
XapI	RAATTY	1 cut(s)	326
XspI	CTAG	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.