Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001841

Physical Location & Seq

Genomic Coordinates Forward (+)

45210566 .. 45211406

Gene Structure 841 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025347

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGAAGGTGAAGAAGACCAAAGCGGTGTCATCGATATTTCTGCTTGTCTTTGTTTCAGACTTCTTGTGTGGGATAGCATTAGCTGCAAAGGGTTCATCTAATCCTTGGCCAGTGATCGGAATCAGTCTCGAAACCACCTATTCATGTGTGGGTGTGTACATAAATGGCCATGTAGAGATCATAGCAAACGACCAAGGCAATAGAATCACAGTATCACACCCTCTTGGATTTAATGATATGGAGGTTCAAAGGGAGATTAAGTTGCTGCCTTATAAGGTTGTGAACATAGATGGGAAGCCTTATATTCAGGTGAAGTTTAGAGGTGAAACCAAGGTGTTTAGCCCTGAGGAAATCAGTGCTATGATATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005788 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016592 GO:0022414 GO:0030154 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0070013 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04918 ko05020 map03060 map04141 map04918 map05020

Pfam Domains

Protein Families

HSP70

Protein Analysis

124

Amino Acids

13.61

Weight (kDa)

8.56

Isoelectric Point (pI)

20.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	38 - 72	3e-07	Hsp70 protein
HSP70	PF00012	77 - 122	4.1e-07	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001841)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g26910 FvH4_2g01780 FvH4_2g01930 FvH4_2g04820 FvH4_2g04841 FvH4_3g29971
malus_domestica	MD01G1129300.v1.1 MD01G1129600.v1.1
pyrus_communis	pycom04g11280 pycom07g18490 pycom12g13460 pycom14g02390
rosa_chinensis	RchiOBHm_Chr6g0244981 RchiOBHm_Chr7g0242871
rosa_laevigata	RLG00000025347
rosa_multiflora	Rmu_sc0000785.1_g000034 Rmu_sc0033687.1_g000001 Rmu_sc0036726.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255620 Rroxscaffold_6G00423680 Rroxscaffold_6G00424170
rosa_rugosa	Rorug07G0107600
rosa_samantha	Rh1BG301100 Rh1DG331900 Rh1DG332900 Rh1DG333000 Rh1DG333100 Rh1DG333400 Rh3AG068100 Rh3BG070400 Rh3BG070600 Rh3BG070700 Rh3CG068700 Rh3CG068900 Rh3CG069000 Rh3DG070500 Rh6BG014700 Rh6BG017000 Rh6BG022500 Rh6CG013700 Rh6CG021100 Rh6CG117700 Rh7AG473000 Rh7DG192400 Rh7DG193800 Rh7DG196100 Rh7DG196300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	273
AciI	CCGC	1 cut(s)	23
AcoI	YGGCCR	2 cut(s)	107, 166
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	1 cut(s)	116
AgsI	TTSAA	1 cut(s)	248
AluBI	AGCT	1 cut(s)	83
AluI	AGCT	1 cut(s)	83
Alw26I	GTCTC	1 cut(s)	131
AoxI	GGCC	2 cut(s)	107, 166
ApeKI	GCWGC	2 cut(s)	83, 265
AsuHPI	GGTGA	3 cut(s)	19, 322, 335
AxyI	CCTNAGG	1 cut(s)	345
BalI	TGGCCA	2 cut(s)	109, 168
BbsI	GAAGAC	1 cut(s)	20
BbvI	GCAGC	2 cut(s)	70, 252
BccI	CCATC	1 cut(s)	284
BcgI	CGANNNNNNTGC	2 cut(s)	22, 56
BcoDI	GTCTC	1 cut(s)	131
BisI	GCNGC	2 cut(s)	84, 266
BlsI	GCNGC	2 cut(s)	85, 267
BpiI	GAAGAC	1 cut(s)	20
Bsa29I	ATCGAT	1 cut(s)	32
BsaBI	GATNNNNATC	1 cut(s)	119
BsaJI	CCNNGG	3 cut(s)	104, 193, 330
BsaXI	ACNNNNNCTCC	2 cut(s)	245, 275
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
Bse1I	ACTGG	1 cut(s)	110
Bse21I	CCTNAGG	1 cut(s)	345
Bse8I	GATNNNNATC	1 cut(s)	119
BseCI	ATCGAT	1 cut(s)	32
BseDI	CCNNGG	3 cut(s)	104, 193, 330
BseJI	GATNNNNATC	1 cut(s)	119
BseLI	CCNNNNNNNGG	1 cut(s)	116
BseMII	CTCAG	1 cut(s)	336
BseNI	ACTGG	1 cut(s)	110
BseXI	GCAGC	2 cut(s)	70, 252
BshFI	GGCC	2 cut(s)	109, 168
BshVI	ATCGAT	1 cut(s)	32
BslI	CCNNNNNNNGG	1 cut(s)	116
BsmAI	GTCTC	1 cut(s)	131
BsnI	GGCC	2 cut(s)	109, 168
Bsp1407I	TGTACA	1 cut(s)	156
Bsp143I	GATC	2 cut(s)	114, 177
BspACI	CCGC	1 cut(s)	23
BspANI	GGCC	2 cut(s)	109, 168
BspCNI	CTCAG	1 cut(s)	337
BspDI	ATCGAT	1 cut(s)	32
BsrGI	TGTACA	1 cut(s)	156
BsrI	ACTGG	1 cut(s)	110
BssECI	CCNNGG	3 cut(s)	104, 193, 330
BssMI	GATC	2 cut(s)	114, 177
BssT1I	CCWWGG	3 cut(s)	104, 193, 330
Bst4CI	ACNGT	1 cut(s)	211
BstAPI	GCANNNNNTGC	1 cut(s)	83
BstAUI	TGTACA	1 cut(s)	156
BstDEI	CTNAG	1 cut(s)	345
BstKTI	GATC	2 cut(s)	117, 180
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	2 cut(s)	114, 177
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstV1I	GCAGC	2 cut(s)	70, 252
BstV2I	GAAGAC	1 cut(s)	20
Bsu15I	ATCGAT	1 cut(s)	32
Bsu36I	CCTNAGG	1 cut(s)	345
BsuRI	GGCC	2 cut(s)	109, 168
BsuTUI	ATCGAT	1 cut(s)	32
BtsIMutI	CAGTG	2 cut(s)	117, 361
ClaI	ATCGAT	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	157
CviAII	CATG	2 cut(s)	144, 170
CviJI	RGCY	5 cut(s)	83, 109, 168, 298, 342
CviKI_1	RGCY	5 cut(s)	83, 109, 168, 298, 342
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	1 cut(s)	345
DpnI	GATC	2 cut(s)	116, 179
DpnII	GATC	2 cut(s)	114, 177
EaeI	YGGCCR	2 cut(s)	107, 166
Eco130I	CCWWGG	3 cut(s)	104, 193, 330
Eco81I	CCTNAGG	1 cut(s)	345
EcoT14I	CCWWGG	3 cut(s)	104, 193, 330
ErhI	CCWWGG	3 cut(s)	104, 193, 330
FaeI	CATG	2 cut(s)	147, 173
FaiI	YATR	9 cut(s)	145, 161, 171, 182, 239, 273, 287, 303, 362
FatI	CATG	2 cut(s)	143, 169
Fnu4HI	GCNGC	2 cut(s)	84, 266
Fsp4HI	GCNGC	2 cut(s)	84, 266
GluI	GCNGC	2 cut(s)	84, 266
HaeIII	GGCC	2 cut(s)	109, 168
Hin1II	CATG	2 cut(s)	147, 173
HinfI	GANTC	2 cut(s)	120, 204
HphI	GGTGA	3 cut(s)	19, 322, 335
Hpy166II	GTNNAC	2 cut(s)	157, 283
Hpy188I	TCNGA	2 cut(s)	58, 119
Hpy188III	TCNNGA	1 cut(s)	128
Hpy8I	GTNNAC	2 cut(s)	157, 283
HpyCH4III	ACNGT	1 cut(s)	211
HpyCH4V	TGCA	1 cut(s)	86
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
HpyF3I	CTNAG	1 cut(s)	345
Hsp92II	CATG	2 cut(s)	147, 173
Kzo9I	GATC	2 cut(s)	114, 177
LpnPI	CCDG	3 cut(s)	123, 293, 357
Lsp1109I	GCAGC	2 cut(s)	70, 252
MalI	GATC	2 cut(s)	116, 179
MboI	GATC	2 cut(s)	114, 177
MboII	GAAGA	2 cut(s)	22, 25
MlsI	TGGCCA	2 cut(s)	109, 168
MluNI	TGGCCA	2 cut(s)	109, 168
MnlI	CCTC	4 cut(s)	231, 235, 314, 340
Mox20I	TGGCCA	2 cut(s)	109, 168
MscI	TGGCCA	2 cut(s)	109, 168
MseI	TTAA	2 cut(s)	231, 258
Msp20I	TGGCCA	2 cut(s)	109, 168
MwoI	GCNNNNNNNGC	1 cut(s)	83
NdeII	GATC	2 cut(s)	114, 177
NlaIII	CATG	2 cut(s)	147, 173
PfeI	GAWTC	2 cut(s)	120, 204
PkrI	GCNGC	2 cut(s)	85, 267
PsiI	TTATAA	1 cut(s)	273
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
SaqAI	TTAA	2 cut(s)	231, 258
SatI	GCNGC	2 cut(s)	84, 266
Sau3AI	GATC	2 cut(s)	114, 177
SetI	ASST	8 cut(s)	9, 85, 140, 246, 279, 312, 325, 336
SsiI	CCGC	1 cut(s)	23
StyI	CCWWGG	3 cut(s)	104, 193, 330
TaaI	ACNGT	1 cut(s)	211
TaqI	TCGA	2 cut(s)	32, 129
TatI	WGTACW	1 cut(s)	156
TfiI	GAWTC	2 cut(s)	120, 204
Tru1I	TTAA	2 cut(s)	231, 258
Tru9I	TTAA	2 cut(s)	231, 258
TscAI	CASTG	2 cut(s)	117, 361
TseI	GCWGC	2 cut(s)	83, 265
TspDTI	ATGAA	3 cut(s)	17, 84, 132
TspRI	CASTG	2 cut(s)	117, 361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.