Rh1DG333400
HSP70 Family

Heat shock cognate 70 kDa

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0001841
Physical Location & Seq
Forward (+)
55953882 .. 55967483
13602 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG333400.1

Sequence Viewer

Length: 228 bp
ATGGCTTCAGGAGAAGAAGGTCATGCAATTGGTATTGATCTAGGGACAACGTACTCGTGTGTGGCGGTATGGCAGTATGATCATGTAGAAGTCATAGTGAATGATCAGGGCAACAGGACTACTCCATCTCAAGTTGCCTTCACTGATACTGAGACGTTTGCAGGTGATGCTGCACTCAACCAGATCATCAGAAACCCTACAAACTCCATCTTCGGTTTGCTTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169
Pfam Domains
Protein Families
HSP70

Protein Analysis

75

Amino Acids

8.06

Weight (kDa)

4.16

Isoelectric Point (pI)

20.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 9 - 72 2.3e-23 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 152
Acc36I ACCTGC 1 cut(s) 152
AciI CCGC 1 cut(s) 65
AfaI GTAC 1 cut(s) 53
Alw26I GTCTC 1 cut(s) 146
ApeKI GCWGC 1 cut(s) 170
AsuHPI GGTGA 1 cut(s) 176
BauI CACGAG 1 cut(s) 55
BbvI GCAGC 1 cut(s) 157
BccI CCATC 2 cut(s) 133, 215
BclI TGATCA 2 cut(s) 79, 103
BcoDI GTCTC 1 cut(s) 146
BfaI CTAG 1 cut(s) 41
BfuAI ACCTGC 1 cut(s) 152
BisI GCNGC 1 cut(s) 171
BlsI GCNGC 1 cut(s) 172
BmsI GCATC 1 cut(s) 157
BpuEI CTTGAG 1 cut(s) 114
BseMII CTCAG 1 cut(s) 141
BseXI GCAGC 1 cut(s) 157
BsgI GTGCAG 1 cut(s) 156
BslFI GGGAC 1 cut(s) 58
BsmAI GTCTC 1 cut(s) 146
BsmBI CGTCTC 1 cut(s) 146
BsmFI GGGAC 1 cut(s) 58
Bsp143I GATC 4 cut(s) 37, 79, 103, 183
BspACI CCGC 1 cut(s) 65
BspCNI CTCAG 1 cut(s) 142
BspMI ACCTGC 1 cut(s) 152
BssMI GATC 4 cut(s) 37, 79, 103, 183
BssSI CACGAG 1 cut(s) 55
Bst2BI CACGAG 1 cut(s) 55
BstAPI GCANNNNNTGC 1 cut(s) 167
BstDEI CTNAG 1 cut(s) 150
BstKTI GATC 4 cut(s) 40, 82, 106, 186
BstMAI GTCTC 1 cut(s) 146
BstMBI GATC 4 cut(s) 37, 79, 103, 183
BstMWI GCNNNNNNNGC 1 cut(s) 167
BstV1I GCAGC 1 cut(s) 157
BtsIMutI CAGTG 1 cut(s) 141
BveI ACCTGC 1 cut(s) 152
Csp6I GTAC 1 cut(s) 52
CviAII CATG 2 cut(s) 23, 83
CviJI RGCY 1 cut(s) 5
CviKI_1 RGCY 1 cut(s) 5
CviQI GTAC 1 cut(s) 52
DdeI CTNAG 1 cut(s) 150
DpnI GATC 4 cut(s) 39, 81, 105, 185
DpnII GATC 4 cut(s) 37, 79, 103, 183
Esp3I CGTCTC 1 cut(s) 146
FaeI CATG 2 cut(s) 26, 86
FaiI YATR 5 cut(s) 24, 70, 78, 84, 95
FaqI GGGAC 1 cut(s) 58
FatI CATG 2 cut(s) 22, 82
FbaI TGATCA 2 cut(s) 79, 103
Fnu4HI GCNGC 1 cut(s) 171
Fsp4HI GCNGC 1 cut(s) 171
FspBI CTAG 1 cut(s) 41
GluI GCNGC 1 cut(s) 171
Hin1II CATG 2 cut(s) 26, 86
HphI GGTGA 1 cut(s) 176
Hpy188I TCNGA 1 cut(s) 191
Hpy188III TCNNGA 1 cut(s) 9
HpyAV CCTTC 2 cut(s) 11, 148
HpyCH4IV ACGT 2 cut(s) 50, 155
HpyCH4V TGCA 3 cut(s) 26, 161, 173
HpyF10VI GCNNNNNNNGC 1 cut(s) 167
HpyF3I CTNAG 1 cut(s) 150
HpySE526I ACGT 2 cut(s) 50, 155
Hsp92II CATG 2 cut(s) 26, 86
Ksp22I TGATCA 2 cut(s) 79, 103
Kzo9I GATC 4 cut(s) 37, 79, 103, 183
LpnPI CCDG 4 cut(s) 92, 100, 147, 194
Lsp1109I GCAGC 1 cut(s) 157
LweI GCATC 1 cut(s) 157
MaeI CTAG 1 cut(s) 41
MaeII ACGT 2 cut(s) 50, 155
MalI GATC 4 cut(s) 39, 81, 105, 185
MboI GATC 4 cut(s) 37, 79, 103, 183
MboII GAAGA 2 cut(s) 26, 202
MfeI CAATTG 1 cut(s) 27
MluCI AATT 2 cut(s) 27, 223
MseI TTAA 2 cut(s) 222, 226
MunI CAATTG 1 cut(s) 27
MwoI GCNNNNNNNGC 1 cut(s) 167
NdeII GATC 4 cut(s) 37, 79, 103, 183
NlaIII CATG 2 cut(s) 26, 86
PacI TTAATTAA 1 cut(s) 226
PaqCI CACCTGC 1 cut(s) 152
PkrI GCNGC 1 cut(s) 172
RsaI GTAC 1 cut(s) 53
RsaNI GTAC 1 cut(s) 52
SaqAI TTAA 2 cut(s) 222, 226
SatI GCNGC 1 cut(s) 171
Sau3AI GATC 4 cut(s) 37, 79, 103, 183
SetI ASST 4 cut(s) 22, 53, 158, 166
SfaNI GCATC 1 cut(s) 157
SmlI CTYRAG 1 cut(s) 129
SmoI CTYRAG 1 cut(s) 129
Sse9I AATT 2 cut(s) 27, 223
SsiI CCGC 1 cut(s) 65
SspMI CTAG 1 cut(s) 41
TaiI ACGT 2 cut(s) 53, 158
TasI AATT 2 cut(s) 27, 223
Tru1I TTAA 2 cut(s) 222, 226
Tru9I TTAA 2 cut(s) 222, 226
TscAI CASTG 1 cut(s) 148
TseI GCWGC 1 cut(s) 170
TspRI CASTG 1 cut(s) 148
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.