Rh7DG192400
HSP70 Family

Heat shock cognate 70 kDa

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001841
Physical Location & Seq
Forward (+)
17976528 .. 17978717
2190 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG192400.1

Sequence Viewer

Length: 336 bp
ATGGCTATGGCTACAAAATGTGAGGGTCCAACGATTGGTATCGACCTCGGAACAACTTACTCGTGTGTGGGAGTTTGGCAACACGGTCGTGTTGAGATTATAGCTAATGATCAGGGCAATAGAACAACACCGTCTTACGTTGCTTTTACGAACAATGGGCGTTTAATTGGTGATGCAGCCAAGAATCAAGTATCCAAGAACCCCACCAACACTAAAACGGAGGCTATGGTTGCATTAGAAAACTATGCAACCAACAAGATGGACACAGTTCATAATCGCTCAAACCTCAACCAAGAAGACAAGAAAAGAATCGTGGATGCGGTTGAAAAAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169
Pfam Domains
Protein Families
HSP70

Protein Analysis

111

Amino Acids

12.2

Weight (kDa)

8.62

Isoelectric Point (pI)

25.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 12 - 74 2.1e-26 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 35
AciI CCGC 1 cut(s) 320
AfiI CCNNNNNNNGG 1 cut(s) 35
AgsI TTSAA 1 cut(s) 326
AleI CACNNNNGTG 1 cut(s) 87
AluBI AGCT 1 cut(s) 104
AluI AGCT 1 cut(s) 104
ApeKI GCWGC 1 cut(s) 176
AspS9I GGNCC 1 cut(s) 26
AsuHPI GGTGA 1 cut(s) 182
AvaII GGWCC 1 cut(s) 26
BauI CACGAG 1 cut(s) 61
BbsI GAAGAC 1 cut(s) 303
BbvI GCAGC 1 cut(s) 188
BccI CCATC 1 cut(s) 253
BcgI CGANNNNNNTGC 2 cut(s) 68, 102
BciVI GTATCC 1 cut(s) 202
BclI TGATCA 1 cut(s) 109
BfuI GTATCC 1 cut(s) 202
BisI GCNGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 178
Bme18I GGWCC 1 cut(s) 26
BmgT120I GGNCC 1 cut(s) 26
BmiI GGNNCC 1 cut(s) 27
BmsI GCATC 2 cut(s) 163, 307
BpiI GAAGAC 1 cut(s) 303
BsaBI GATNNNNATC 1 cut(s) 38
BsaJI CCNNGG 1 cut(s) 46
Bsc4I CCNNNNNNNGG 1 cut(s) 35
Bse8I GATNNNNATC 1 cut(s) 38
BseDI CCNNGG 1 cut(s) 46
BseGI GGATG 1 cut(s) 322
BseJI GATNNNNATC 1 cut(s) 38
BseLI CCNNNNNNNGG 1 cut(s) 35
BseXI GCAGC 1 cut(s) 188
Bsh1285I CGRYCG 1 cut(s) 88
BsiEI CGRYCG 1 cut(s) 88
BslI CCNNNNNNNGG 1 cut(s) 35
Bsp143I GATC 1 cut(s) 109
BspACI CCGC 1 cut(s) 320
BspLI GGNNCC 1 cut(s) 27
BssECI CCNNGG 1 cut(s) 46
BssMI GATC 1 cut(s) 109
BssSI CACGAG 1 cut(s) 61
Bst2BI CACGAG 1 cut(s) 61
Bst4CI ACNGT 3 cut(s) 86, 132, 268
BstF5I GGATG 1 cut(s) 322
BstKTI GATC 1 cut(s) 112
BstMBI GATC 1 cut(s) 109
BstMCI CGRYCG 1 cut(s) 88
BstMWI GCNNNNNNNGC 1 cut(s) 230
BstV1I GCAGC 1 cut(s) 188
BstV2I GAAGAC 1 cut(s) 303
BstXI CCANNNNNNTGG 1 cut(s) 259
BsuI GTATCC 1 cut(s) 202
BtsCI GGATG 1 cut(s) 322
Cfr13I GGNCC 1 cut(s) 26
CviJI RGCY 5 cut(s) 5, 11, 104, 179, 224
CviKI_1 RGCY 5 cut(s) 5, 11, 104, 179, 224
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
Eco47I GGWCC 1 cut(s) 26
FaiI YATR 5 cut(s) 8, 101, 227, 246, 273
FbaI TGATCA 1 cut(s) 109
Fnu4HI GCNGC 1 cut(s) 177
FokI GGATG 1 cut(s) 329
Fsp4HI GCNGC 1 cut(s) 177
GluI GCNGC 1 cut(s) 177
HinfI GANTC 2 cut(s) 184, 309
HphI GGTGA 1 cut(s) 182
Hpy188I TCNGA 1 cut(s) 50
HpyCH4III ACNGT 3 cut(s) 86, 132, 268
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 3 cut(s) 176, 233, 248
HpyF10VI GCNNNNNNNGC 1 cut(s) 230
HpySE526I ACGT 1 cut(s) 138
Ksp22I TGATCA 1 cut(s) 109
Kzo9I GATC 1 cut(s) 109
LpnPI CCDG 1 cut(s) 98
Lsp1109I GCAGC 1 cut(s) 188
LweI GCATC 2 cut(s) 163, 307
MaeII ACGT 1 cut(s) 138
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MboII GAAGA 1 cut(s) 308
MluCI AATT 1 cut(s) 165
MmeI TCCRAC 1 cut(s) 53
MnlI CCTC 4 cut(s) 16, 56, 214, 296
MseI TTAA 1 cut(s) 164
MslI CAYNNNNRTG 1 cut(s) 87
MwoI GCNNNNNNNGC 1 cut(s) 230
NdeII GATC 1 cut(s) 109
NlaIV GGNNCC 1 cut(s) 27
OliI CACNNNNGTG 1 cut(s) 87
PfeI GAWTC 2 cut(s) 184, 309
PflMI CCANNNNNTGG 1 cut(s) 35
PkrI GCNGC 1 cut(s) 178
PspN4I GGNNCC 1 cut(s) 27
PspPI GGNCC 1 cut(s) 26
RseI CAYNNNNRTG 1 cut(s) 87
SaqAI TTAA 1 cut(s) 164
SatI GCNGC 1 cut(s) 177
Sau3AI GATC 1 cut(s) 109
Sau96I GGNCC 1 cut(s) 26
SetI ASST 4 cut(s) 48, 106, 141, 288
SfaNI GCATC 2 cut(s) 163, 307
SinI GGWCC 1 cut(s) 26
SmiMI CAYNNNNRTG 1 cut(s) 87
Sse9I AATT 1 cut(s) 165
SsiI CCGC 1 cut(s) 320
TaaI ACNGT 3 cut(s) 86, 132, 268
TaiI ACGT 1 cut(s) 141
TaqI TCGA 1 cut(s) 42
TasI AATT 1 cut(s) 165
TfiI GAWTC 2 cut(s) 184, 309
Tru1I TTAA 1 cut(s) 164
Tru9I TTAA 1 cut(s) 164
TseI GCWGC 1 cut(s) 176
TspDTI ATGAA 1 cut(s) 260
TspGWI ACGGA 1 cut(s) 233
Van91I CCANNNNNTGG 1 cut(s) 35
VpaK11BI GGWCC 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.