Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001841

Physical Location & Seq

Genomic Coordinates Reverse (-)

55642008 .. 55644611

Gene Structure 2604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG331900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGCCGGAAAAGGAGAGGGACCGGCGATCGGAATCGACCTCGGCACCACCTACTCCTGCGTCGGAGTGTGGCAGCACGACCGTGTTGAGATCATAGCCAACGATCAGGGGAACCGGACGACGCCGTCTTATGTGGCGTTCACTGACACCGAGCGTTTGATCGGTGATGCCGCAAAGAACCAGGTCGCCATGAACCCTATCAACACCGTTTTCGGGCAGAAGAACAAGATTACTATTACCAATGACAAGGGAAGGCTGTCCAAGGAGGAAATTGAGAAGATGGTTCAAGAGGCTGAGAAGTACAAAGCAGAAGACGAGGAGCACAAGAAGAAGGTCGAGGCTAAGAATGCTCTTGAGAATTATGCTTACAACATGAGGAACACCATCAAGGATGACAAGATTGCTTCAAAGATTGACCCATCTGACAAAAAGAAGATTGAAGATGCAATTGATCAGGCCATTCAGTGGCTCGATAATAATCAGCTAGCAGAGGCTGATGAATTCGAGGACAAGATGAAGGAGCTCGAGAGTCTTTGCAACCCTATCATTGCCAAGATGTACCAGGGTGGTGCTGCTCCTGACATGGGTGGCGGCGGGGAAGCTGATGTTCCTCCTTCTGGTGGAAGTGGTGCTGGTCCAAAGATTGAAGAAGTCGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0003674 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0006950 GO:0006979 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009987 GO:0010035 GO:0010038 GO:0012505 GO:0016020 GO:0016567 GO:0017076 GO:0019538 GO:0019899 GO:0030312 GO:0030554 GO:0031090 GO:0031625 GO:0032446 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043167 GO:0043168 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046686 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0070647 GO:0071704 GO:0071944 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169

Pfam Domains

Protein Families

HSP70 MreB_Mbl

Protein Analysis

219

Amino Acids

23.94

Weight (kDa)

4.74

Isoelectric Point (pI)

33.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	9 - 76	6.7e-28	Hsp70 protein
HSP70	PF00012	72 - 188	2.4e-17	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001841)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g26910 FvH4_2g01780 FvH4_2g01930 FvH4_2g04820 FvH4_2g04841 FvH4_3g29971
malus_domestica	MD01G1129300.v1.1 MD01G1129600.v1.1
pyrus_communis	pycom04g11280 pycom07g18490 pycom12g13460 pycom14g02390
rosa_chinensis	RchiOBHm_Chr6g0244981 RchiOBHm_Chr7g0242871
rosa_laevigata	RLG00000025347
rosa_multiflora	Rmu_sc0000785.1_g000034 Rmu_sc0033687.1_g000001 Rmu_sc0036726.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255620 Rroxscaffold_6G00423680 Rroxscaffold_6G00424170
rosa_rugosa	Rorug07G0107600
rosa_samantha	Rh1BG301100 Rh1DG331900 Rh1DG332900 Rh1DG333000 Rh1DG333100 Rh1DG333400 Rh3AG068100 Rh3BG070400 Rh3BG070600 Rh3BG070700 Rh3CG068700 Rh3CG068900 Rh3CG069000 Rh3DG070500 Rh6BG014700 Rh6BG017000 Rh6BG022500 Rh6CG013700 Rh6CG021100 Rh6CG117700 Rh7AG473000 Rh7DG192400 Rh7DG193800 Rh7DG196100 Rh7DG196300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	124
AccB1I	GGYRCC	1 cut(s)	44
AccB7I	CCANNNNNTGG	1 cut(s)	465
AccI	GTMKAC	1 cut(s)	654
AciI	CCGC	3 cut(s)	171, 591, 594
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	500
AcyI	GRCGYC	1 cut(s)	122
AfaI	GTAC	2 cut(s)	302, 560
AfiI	CCNNNNNNNGG	6 cut(s)	29, 213, 465, 584, 617, 620
AgsI	TTSAA	4 cut(s)	287, 408, 440, 647
AjnI	CCWGG	2 cut(s)	180, 561
AleI	CACNNNNGTG	1 cut(s)	81
AluBI	AGCT	3 cut(s)	484, 523, 602
AluI	AGCT	3 cut(s)	484, 523, 602
Alw21I	GWGCWC	2 cut(s)	324, 525
AlwNI	CAGNNNCTG	1 cut(s)	494
Ama87I	CYCGRG	1 cut(s)	524
AoxI	GGCC	2 cut(s)	3, 456
ApeKI	GCWGC	2 cut(s)	73, 572
ApoI	RAATTY	1 cut(s)	500
AspS9I	GGNCC	2 cut(s)	20, 635
AsuHPI	GGTGA	1 cut(s)	176
AsuNHI	GCTAGC	1 cut(s)	484
AvaI	CYCGRG	1 cut(s)	524
AvaII	GGWCC	2 cut(s)	20, 635
BanI	GGYRCC	1 cut(s)	44
BanII	GRGCYC	1 cut(s)	525
BbsI	GAAGAC	1 cut(s)	318
Bbv12I	GWGCWC	2 cut(s)	324, 525
BbvI	GCAGC	2 cut(s)	85, 559
BccI	CCATC	3 cut(s)	274, 392, 427
BceAI	ACGGC	1 cut(s)	109
BciT130I	CCWGG	2 cut(s)	182, 563
BclI	TGATCA	1 cut(s)	451
BfaI	CTAG	1 cut(s)	485
BisI	GCNGC	4 cut(s)	74, 171, 573, 592
BlsI	GCNGC	4 cut(s)	75, 172, 574, 593
Bme1390I	CCNGG	2 cut(s)	182, 563
Bme18I	GGWCC	2 cut(s)	20, 635
BmeT110I	CYCGRG	1 cut(s)	524
BmgT120I	GGNCC	2 cut(s)	20, 635
BmiI	GGNNCC	3 cut(s)	21, 46, 113
BmrFI	CCNGG	2 cut(s)	182, 563
BmsI	GCATC	2 cut(s)	157, 433
BmtI	GCTAGC	1 cut(s)	488
BpiI	GAAGAC	1 cut(s)	318
BpuEI	CTTGAG	1 cut(s)	374
BsaBI	GATNNNNATC	2 cut(s)	32, 477
BsaHI	GRCGYC	1 cut(s)	122
BsaJI	CCNNGG	3 cut(s)	40, 261, 562
BsaWI	WCCGGW	1 cut(s)	114
Bsc4I	CCNNNNNNNGG	6 cut(s)	29, 213, 465, 584, 617, 620
Bse118I	RCCGGY	1 cut(s)	22
Bse3DI	GCAATG	1 cut(s)	546
Bse8I	GATNNNNATC	2 cut(s)	32, 477
BseBI	CCWGG	2 cut(s)	182, 563
BseDI	CCNNGG	3 cut(s)	40, 261, 562
BseGI	GGATG	1 cut(s)	397
BseJI	GATNNNNATC	2 cut(s)	32, 477
BseLI	CCNNNNNNNGG	6 cut(s)	29, 213, 465, 584, 617, 620
BseMI	GCAATG	1 cut(s)	546
BseMII	CTCAG	1 cut(s)	285
BseRI	GAGGAG	1 cut(s)	332
BseXI	GCAGC	2 cut(s)	85, 559
Bsh1285I	CGRYCG	2 cut(s)	30, 82
BshFI	GGCC	2 cut(s)	5, 458
BshNI	GGYRCC	1 cut(s)	44
BsiEI	CGRYCG	2 cut(s)	30, 82
BsiHKAI	GWGCWC	2 cut(s)	324, 525
BsiHKCI	CYCGRG	1 cut(s)	524
BsiSI	CCGG	3 cut(s)	6, 23, 115
BslFI	GGGAC	1 cut(s)	33
BslI	CCNNNNNNNGG	6 cut(s)	29, 213, 465, 584, 617, 620
BsmFI	GGGAC	1 cut(s)	33
BsmI	GAATGC	1 cut(s)	352
BsnI	GGCC	2 cut(s)	5, 458
BsoBI	CYCGRG	1 cut(s)	524
Bsp1286I	GDGCHC	2 cut(s)	324, 525
Bsp143I	GATC	5 cut(s)	27, 90, 103, 159, 451
BspACI	CCGC	3 cut(s)	171, 591, 594
BspANI	GGCC	2 cut(s)	5, 458
BspCNI	CTCAG	1 cut(s)	286
BspLI	GGNNCC	3 cut(s)	21, 46, 113
BspOI	GCTAGC	1 cut(s)	488
BspT107I	GGYRCC	1 cut(s)	44
BsrDI	GCAATG	1 cut(s)	546
BsrFI	RCCGGY	1 cut(s)	22
BssAI	RCCGGY	1 cut(s)	22
BssECI	CCNNGG	3 cut(s)	40, 261, 562
BssMI	GATC	5 cut(s)	27, 90, 103, 159, 451
BssNI	GRCGYC	1 cut(s)	122
BssT1I	CCWWGG	1 cut(s)	261
Bst2UI	CCWGG	2 cut(s)	182, 563
Bst4CI	ACNGT	2 cut(s)	83, 208
BstACI	GRCGYC	1 cut(s)	122
BstC8I	GCNNGC	1 cut(s)	486
BstDEI	CTNAG	2 cut(s)	294, 342
BstF5I	GGATG	1 cut(s)	397
BstKTI	GATC	5 cut(s)	30, 93, 106, 162, 454
BstMBI	GATC	5 cut(s)	27, 90, 103, 159, 451
BstMCI	CGRYCG	2 cut(s)	30, 82
BstMWI	GCNNNNNNNGC	1 cut(s)	347
BstNI	CCWGG	2 cut(s)	182, 563
BstSCI	CCNGG	2 cut(s)	180, 561
BstV1I	GCAGC	2 cut(s)	85, 559
BstV2I	GAAGAC	1 cut(s)	318
BsuRI	GGCC	2 cut(s)	5, 458
BtsCI	GGATG	1 cut(s)	397
BtsIMutI	CAGTG	2 cut(s)	141, 470
Cac8I	GCNNGC	1 cut(s)	486
CaiI	CAGNNNCTG	1 cut(s)	494
Cfr10I	RCCGGY	1 cut(s)	22
Cfr13I	GGNCC	2 cut(s)	20, 635
CseI	GACGC	2 cut(s)	49, 130
CsiI	ACCWGGT	1 cut(s)	180
Csp6I	GTAC	2 cut(s)	301, 559
CviAII	CATG	3 cut(s)	190, 373, 583
CviQI	GTAC	2 cut(s)	301, 559
DdeI	CTNAG	2 cut(s)	294, 342
DpnI	GATC	5 cut(s)	29, 92, 105, 161, 453
DpnII	GATC	5 cut(s)	27, 90, 103, 159, 451
DrdI	GACNNNNNNGTC	1 cut(s)	124
DseDI	GACNNNNNNGTC	1 cut(s)	124
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	523
Eco130I	CCWWGG	1 cut(s)	261
Eco24I	GRGCYC	1 cut(s)	525
Eco47I	GGWCC	2 cut(s)	20, 635
Eco53kI	GAGCTC	1 cut(s)	523
Eco88I	CYCGRG	1 cut(s)	524
EcoICRI	GAGCTC	1 cut(s)	523
EcoRI	GAATTC	1 cut(s)	500
EcoRII	CCWGG	2 cut(s)	180, 561
EcoT14I	CCWWGG	1 cut(s)	261
EcoT38I	GRGCYC	1 cut(s)	525
ErhI	CCWWGG	1 cut(s)	261
FaeI	CATG	3 cut(s)	193, 376, 586
FaiI	YATR	6 cut(s)	95, 132, 191, 363, 374, 584
FaqI	GGGAC	1 cut(s)	33
FatI	CATG	3 cut(s)	189, 372, 582
FauI	CCCGC	1 cut(s)	587
FbaI	TGATCA	1 cut(s)	451
FblI	GTMKAC	1 cut(s)	654
Fnu4HI	GCNGC	4 cut(s)	74, 171, 573, 592
FokI	GGATG	1 cut(s)	404
FriOI	GRGCYC	1 cut(s)	525
Fsp4HI	GCNGC	4 cut(s)	74, 171, 573, 592
FspBI	CTAG	1 cut(s)	485
GluI	GCNGC	4 cut(s)	74, 171, 573, 592
HaeIII	GGCC	2 cut(s)	5, 458
HapII	CCGG	3 cut(s)	6, 23, 115
HgaI	GACGC	2 cut(s)	49, 130
Hin1I	GRCGYC	1 cut(s)	122
Hin1II	CATG	3 cut(s)	193, 376, 586
HincII	GTYRAC	1 cut(s)	655
HindII	GTYRAC	1 cut(s)	655
HinfI	GANTC	2 cut(s)	33, 529
HpaII	CCGG	3 cut(s)	6, 23, 115
HphI	GGTGA	1 cut(s)	176
Hpy166II	GTNNAC	2 cut(s)	141, 655
Hpy188I	TCNGA	3 cut(s)	32, 65, 424
Hpy188III	TCNNGA	4 cut(s)	287, 353, 526, 578
Hpy8I	GTNNAC	2 cut(s)	141, 655
Hpy99I	CGWCG	2 cut(s)	65, 124
HpyAV	CCTTC	4 cut(s)	246, 325, 511, 624
HpyCH4III	ACNGT	2 cut(s)	83, 208
HpyCH4V	TGCA	2 cut(s)	446, 537
HpyF10VI	GCNNNNNNNGC	1 cut(s)	347
HpyF3I	CTNAG	2 cut(s)	294, 342
Hsp92I	GRCGYC	1 cut(s)	122
Hsp92II	CATG	3 cut(s)	193, 376, 586
Ksp22I	TGATCA	1 cut(s)	451
Kzo9I	GATC	5 cut(s)	27, 90, 103, 159, 451
LmnI	GCTCC	3 cut(s)	319, 520, 580
Lsp1109I	GCAGC	2 cut(s)	85, 559
LweI	GCATC	2 cut(s)	157, 433
MabI	ACCWGGT	1 cut(s)	180
MaeI	CTAG	1 cut(s)	485
MalI	GATC	5 cut(s)	29, 92, 105, 161, 453
MboI	GATC	5 cut(s)	27, 90, 103, 159, 451
MboII	GAAGA	7 cut(s)	232, 289, 323, 340, 445, 452, 659
MfeI	CAATTG	1 cut(s)	447
MhlI	GDGCHC	2 cut(s)	324, 525
MluCI	AATT	4 cut(s)	270, 358, 447, 500
MlyI	GAGTC	1 cut(s)	538
MmeI	TCCRAC	1 cut(s)	43
MslI	CAYNNNNRTG	1 cut(s)	81
MspI	CCGG	3 cut(s)	6, 23, 115
MspR9I	CCNGG	2 cut(s)	182, 563
MunI	CAATTG	1 cut(s)	447
Mva1269I	GAATGC	1 cut(s)	352
MvaI	CCWGG	2 cut(s)	182, 563
MwoI	GCNNNNNNNGC	1 cut(s)	347
NdeII	GATC	5 cut(s)	27, 90, 103, 159, 451
NheI	GCTAGC	1 cut(s)	484
NlaIII	CATG	3 cut(s)	193, 376, 586
NlaIV	GGNNCC	3 cut(s)	21, 46, 113
NmeAIII	GCCGAG	1 cut(s)	21
OliI	CACNNNNGTG	1 cut(s)	81
PaeR7I	CTCGAG	1 cut(s)	524
PctI	GAATGC	1 cut(s)	352
PfeI	GAWTC	1 cut(s)	33
PflFI	GACNNNGTC	1 cut(s)	124
PflMI	CCANNNNNTGG	1 cut(s)	465
PkrI	GCNGC	4 cut(s)	75, 172, 574, 593
Ple19I	CGATCG	1 cut(s)	30
PleI	GAGTC	1 cut(s)	537
PpsI	GAGTC	1 cut(s)	537
Psp124BI	GAGCTC	1 cut(s)	525
Psp6I	CCWGG	2 cut(s)	180, 561
PspGI	CCWGG	2 cut(s)	180, 561
PspN4I	GGNNCC	3 cut(s)	21, 46, 113
PspPI	GGNCC	2 cut(s)	20, 635
PstNI	CAGNNNCTG	1 cut(s)	494
PsyI	GACNNNGTC	1 cut(s)	124
PvuI	CGATCG	1 cut(s)	30
RsaI	GTAC	2 cut(s)	302, 560
RsaNI	GTAC	2 cut(s)	301, 559
RseI	CAYNNNNRTG	1 cut(s)	81
SacI	GAGCTC	1 cut(s)	525
SalI	GTCGAC	1 cut(s)	653
SatI	GCNGC	4 cut(s)	74, 171, 573, 592
Sau3AI	GATC	5 cut(s)	27, 90, 103, 159, 451
Sau96I	GGNCC	2 cut(s)	20, 635
SchI	GAGTC	1 cut(s)	538
ScrFI	CCNGG	2 cut(s)	182, 563
SduI	GDGCHC	2 cut(s)	324, 525
SetI	ASST	7 cut(s)	42, 53, 186, 336, 486, 525, 604
SexAI	ACCWGGT	1 cut(s)	180
SfaNI	GCATC	2 cut(s)	157, 433
Sfr274I	CTCGAG	1 cut(s)	524
SinI	GGWCC	2 cut(s)	20, 635
SlaI	CTCGAG	1 cut(s)	524
SmiMI	CAYNNNNRTG	1 cut(s)	81
SmlI	CTYRAG	2 cut(s)	353, 524
SmoI	CTYRAG	2 cut(s)	353, 524
Sse9I	AATT	4 cut(s)	270, 358, 447, 500
SsiI	CCGC	3 cut(s)	171, 591, 594
SspMI	CTAG	1 cut(s)	485
SstI	GAGCTC	1 cut(s)	525
StyD4I	CCNGG	2 cut(s)	180, 561
StyI	CCWWGG	1 cut(s)	261
TaaI	ACNGT	2 cut(s)	83, 208
TaqI	TCGA	6 cut(s)	36, 336, 471, 504, 525, 654
TasI	AATT	4 cut(s)	270, 358, 447, 500
TatI	WGTACW	1 cut(s)	300
TauI	GCSGC	2 cut(s)	173, 594
TfiI	GAWTC	1 cut(s)	33
TscAI	CASTG	2 cut(s)	148, 470
TseI	GCWGC	2 cut(s)	73, 572
TspDTI	ATGAA	3 cut(s)	206, 513, 530
TspRI	CASTG	2 cut(s)	148, 470
Tth111I	GACNNNGTC	1 cut(s)	124
Van91I	CCANNNNNTGG	1 cut(s)	465
VpaK11BI	GGWCC	2 cut(s)	20, 635
XapI	RAATTY	1 cut(s)	500
XhoI	CTCGAG	1 cut(s)	524
XmiI	GTMKAC	1 cut(s)	654
XspI	CTAG	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.