Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0001841

Physical Location & Seq

Genomic Coordinates Reverse (-)

4774747 .. 4780152

Gene Structure 5406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG070500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGAGGTGAAGAAGACCAAAGCGGTGTCATCGATATTTCTGCTCGTCTTCGTTTCAGACTTCTTGTGTGGGATGGCATTAGCTGCAAAGGGTTCATCTTATCCTTGGCCACGGCTCATAGGGAGAGAATTTAATGATATGGAGGTTCAAAGGGAGATTAAGTTGTTGCCTTATAAGGTTGTGAACATAGATGGGAAGCCTTATATTCAGGTGAAGTTTAGAGGTGAAACCAAGGTGTTTAGCCCTGAGGAAATCAGTGCTAAGATATTGACTAAGATGAAGGAAACAGCTGAGGCTAGCTTATTTGGGGAAGAAGATCAAAGACGCTCTCATAACTGTTCCAGAGGTATTTATGGAGGTGAGAGGAAAAGAAGGCCCAGTGCAACTACAACTGCTGCCTTGCTCAGGGGTTTCTTGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005788 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016592 GO:0022414 GO:0030154 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0070013 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04918 ko05020 map03060 map04141 map04918 map05020

Pfam Domains

Protein Families

HSP70

Protein Analysis

140

Amino Acids

15.84

Weight (kDa)

9.54

Isoelectric Point (pI)

45.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	38 - 101	3.2e-16	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001841)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g26910 FvH4_2g01780 FvH4_2g01930 FvH4_2g04820 FvH4_2g04841 FvH4_3g29971
malus_domestica	MD01G1129300.v1.1 MD01G1129600.v1.1
pyrus_communis	pycom04g11280 pycom07g18490 pycom12g13460 pycom14g02390
rosa_chinensis	RchiOBHm_Chr6g0244981 RchiOBHm_Chr7g0242871
rosa_laevigata	RLG00000025347
rosa_multiflora	Rmu_sc0000785.1_g000034 Rmu_sc0033687.1_g000001 Rmu_sc0036726.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255620 Rroxscaffold_6G00423680 Rroxscaffold_6G00424170
rosa_rugosa	Rorug07G0107600
rosa_samantha	Rh1BG301100 Rh1DG331900 Rh1DG332900 Rh1DG333000 Rh1DG333100 Rh1DG333400 Rh3AG068100 Rh3BG070400 Rh3BG070600 Rh3BG070700 Rh3CG068700 Rh3CG068900 Rh3CG069000 Rh3DG070500 Rh6BG014700 Rh6BG017000 Rh6BG022500 Rh6CG013700 Rh6CG021100 Rh6CG117700 Rh7AG473000 Rh7DG192400 Rh7DG193800 Rh7DG196100 Rh7DG196300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	174
AciI	CCGC	1 cut(s)	23
AcoI	YGGCCR	1 cut(s)	107
AcsI	RAATTY	1 cut(s)	128
AfiI	CCNNNNNNNGG	1 cut(s)	405
AgsI	TTSAA	1 cut(s)	149
AluBI	AGCT	3 cut(s)	83, 290, 300
AluI	AGCT	3 cut(s)	83, 290, 300
AoxI	GGCC	2 cut(s)	107, 374
ApeKI	GCWGC	2 cut(s)	83, 395
ApoI	RAATTY	1 cut(s)	128
AspS9I	GGNCC	1 cut(s)	375
AsuHPI	GGTGA	4 cut(s)	19, 223, 236, 371
AsuNHI	GCTAGC	1 cut(s)	296
AxyI	CCTNAGG	1 cut(s)	246
BalI	TGGCCA	1 cut(s)	109
BbsI	GAAGAC	2 cut(s)	20, 40
BbvCI	CCTCAGC	1 cut(s)	291
BbvI	GCAGC	2 cut(s)	70, 382
BccI	CCATC	2 cut(s)	67, 185
BceAI	ACGGC	1 cut(s)	128
BcgI	CGANNNNNNTGC	2 cut(s)	22, 56
BfaI	CTAG	1 cut(s)	297
BisI	GCNGC	2 cut(s)	84, 396
BlsI	GCNGC	2 cut(s)	85, 397
BmgT120I	GGNCC	1 cut(s)	375
BmrI	ACTGGG	1 cut(s)	372
BmtI	GCTAGC	1 cut(s)	300
BmuI	ACTGGG	1 cut(s)	372
BpiI	GAAGAC	2 cut(s)	20, 40
Bpu10I	CCTNAGC	2 cut(s)	291, 404
Bsa29I	ATCGAT	1 cut(s)	32
BsaJI	CCNNGG	3 cut(s)	104, 110, 231
BsaXI	ACNNNNNCTCC	2 cut(s)	146, 176
Bsc4I	CCNNNNNNNGG	1 cut(s)	405
Bse1I	ACTGG	1 cut(s)	378
Bse21I	CCTNAGG	1 cut(s)	246
BseCI	ATCGAT	1 cut(s)	32
BseDI	CCNNGG	3 cut(s)	104, 110, 231
BseGI	GGATG	1 cut(s)	78
BseLI	CCNNNNNNNGG	1 cut(s)	405
BseMII	CTCAG	3 cut(s)	237, 282, 418
BseNI	ACTGG	1 cut(s)	378
BseXI	GCAGC	2 cut(s)	70, 382
BshFI	GGCC	2 cut(s)	109, 376
BshVI	ATCGAT	1 cut(s)	32
BslI	CCNNNNNNNGG	1 cut(s)	405
BsnI	GGCC	2 cut(s)	109, 376
Bsp143I	GATC	1 cut(s)	316
BspACI	CCGC	1 cut(s)	23
BspANI	GGCC	2 cut(s)	109, 376
BspCNI	CTCAG	3 cut(s)	238, 283, 417
BspDI	ATCGAT	1 cut(s)	32
BspOI	GCTAGC	1 cut(s)	300
BsrI	ACTGG	1 cut(s)	378
BssECI	CCNNGG	3 cut(s)	104, 110, 231
BssMI	GATC	1 cut(s)	316
BssT1I	CCWWGG	2 cut(s)	104, 231
Bst4CI	ACNGT	1 cut(s)	338
BstAPI	GCANNNNNTGC	1 cut(s)	83
BstC8I	GCNNGC	1 cut(s)	298
BstDEI	CTNAG	5 cut(s)	246, 261, 273, 291, 404
BstDSI	CCRYGG	1 cut(s)	110
BstENI	CCTNNNNNAGG	1 cut(s)	403
BstF5I	GGATG	1 cut(s)	78
BstKTI	GATC	1 cut(s)	319
BstMBI	GATC	1 cut(s)	316
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstV1I	GCAGC	2 cut(s)	70, 382
BstV2I	GAAGAC	2 cut(s)	20, 40
Bsu15I	ATCGAT	1 cut(s)	32
Bsu36I	CCTNAGG	1 cut(s)	246
BsuRI	GGCC	2 cut(s)	109, 376
BsuTUI	ATCGAT	1 cut(s)	32
BtgI	CCRYGG	1 cut(s)	110
BtsCI	GGATG	1 cut(s)	78
BtsIMutI	CAGTG	2 cut(s)	262, 385
Cac8I	GCNNGC	1 cut(s)	298
Cfr13I	GGNCC	1 cut(s)	375
ClaI	ATCGAT	1 cut(s)	32
CseI	GACGC	1 cut(s)	333
CviJI	RGCY	9 cut(s)	83, 109, 115, 199, 243, 290, 296, 300, 376
CviKI_1	RGCY	9 cut(s)	83, 109, 115, 199, 243, 290, 296, 300, 376
DdeI	CTNAG	5 cut(s)	246, 261, 273, 291, 404
DpnI	GATC	1 cut(s)	318
DpnII	GATC	1 cut(s)	316
EaeI	YGGCCR	1 cut(s)	107
Eco130I	CCWWGG	2 cut(s)	104, 231
Eco81I	CCTNAGG	1 cut(s)	246
EcoNI	CCTNNNNNAGG	1 cut(s)	403
EcoT14I	CCWWGG	2 cut(s)	104, 231
ErhI	CCWWGG	2 cut(s)	104, 231
FaiI	YATR	7 cut(s)	119, 140, 174, 188, 204, 333, 354
Fnu4HI	GCNGC	2 cut(s)	84, 396
FokI	GGATG	1 cut(s)	85
Fsp4HI	GCNGC	2 cut(s)	84, 396
FspBI	CTAG	1 cut(s)	297
GluI	GCNGC	2 cut(s)	84, 396
HaeIII	GGCC	2 cut(s)	109, 376
HgaI	GACGC	1 cut(s)	333
HphI	GGTGA	4 cut(s)	19, 223, 236, 371
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	1 cut(s)	58
Hpy188III	TCNNGA	1 cut(s)	342
Hpy8I	GTNNAC	1 cut(s)	184
HpyAV	CCTTC	2 cut(s)	274, 366
HpyCH4III	ACNGT	1 cut(s)	338
HpyCH4V	TGCA	2 cut(s)	86, 383
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
HpyF3I	CTNAG	5 cut(s)	246, 261, 273, 291, 404
Kzo9I	GATC	1 cut(s)	316
LpnPI	CCDG	5 cut(s)	194, 258, 355, 391, 391
Lsp1109I	GCAGC	2 cut(s)	70, 382
MaeI	CTAG	1 cut(s)	297
MalI	GATC	1 cut(s)	318
MboI	GATC	1 cut(s)	316
MboII	GAAGA	5 cut(s)	22, 25, 40, 323, 326
MlsI	TGGCCA	1 cut(s)	109
MluCI	AATT	1 cut(s)	128
MluNI	TGGCCA	1 cut(s)	109
MnlI	CCTC	7 cut(s)	136, 215, 241, 286, 338, 350, 357
Mox20I	TGGCCA	1 cut(s)	109
MscI	TGGCCA	1 cut(s)	109
MseI	TTAA	2 cut(s)	132, 159
Msp20I	TGGCCA	1 cut(s)	109
MspA1I	CMGCKG	1 cut(s)	290
MwoI	GCNNNNNNNGC	1 cut(s)	83
NdeII	GATC	1 cut(s)	316
NheI	GCTAGC	1 cut(s)	296
PkrI	GCNGC	2 cut(s)	85, 397
PsiI	TTATAA	1 cut(s)	174
PspPI	GGNCC	1 cut(s)	375
PvuII	CAGCTG	1 cut(s)	290
SaqAI	TTAA	2 cut(s)	132, 159
SatI	GCNGC	2 cut(s)	84, 396
Sau3AI	GATC	1 cut(s)	316
Sau96I	GGNCC	1 cut(s)	375
Sse9I	AATT	1 cut(s)	128
SsiI	CCGC	1 cut(s)	23
SspMI	CTAG	1 cut(s)	297
StyI	CCWWGG	2 cut(s)	104, 231
TaaI	ACNGT	1 cut(s)	338
TaqI	TCGA	1 cut(s)	32
TasI	AATT	1 cut(s)	128
Tru1I	TTAA	2 cut(s)	132, 159
Tru9I	TTAA	2 cut(s)	132, 159
TscAI	CASTG	2 cut(s)	262, 385
TseI	GCWGC	2 cut(s)	83, 395
TspDTI	ATGAA	2 cut(s)	84, 293
TspRI	CASTG	2 cut(s)	262, 385
XagI	CCTNNNNNAGG	1 cut(s)	403
XapI	RAATTY	1 cut(s)	128
XspI	CTAG	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.