Rh7DG196100
HSP70 Family

Belongs to the heat shock protein 70 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001841
Physical Location & Seq
Reverse (-)
18442011 .. 18442322
312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG196100.1

Sequence Viewer

Length: 240 bp
ATGTCTATGTTTGGAAAAGGAGAAGGTCCAGCTATTGGTATAGATCTTGGAACAACTTACTCATGCGTTGGCGTCTGGCAACACGGTCATGTTGAGATCATAGCCAATGACCAGGGCAACAGAACAACGCCTTCTTACGTTGCTTTTACGGATACTGGGCGTTTGATTGGTGATGCTGCCAAGAACCAAGCCTCCATGAACCCCATTAACACTGTTTTTGATATGCATGTACTTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169
Pfam Domains
Protein Families
HSP70

Protein Analysis

79

Amino Acids

8.46

Weight (kDa)

5.3

Isoelectric Point (pI)

20.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 11 - 77 3.5e-28 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 35
AcyI GRCGYC 1 cut(s) 72
AfaI GTAC 1 cut(s) 231
AfiI CCNNNNNNNGG 1 cut(s) 35
AjnI CCWGG 1 cut(s) 111
AloI GAACNNNNNNTCC 2 cut(s) 176, 208
AluBI AGCT 1 cut(s) 32
AluI AGCT 1 cut(s) 32
ApeKI GCWGC 1 cut(s) 176
AspS9I GGNCC 1 cut(s) 26
AsuHPI GGTGA 1 cut(s) 182
AvaII GGWCC 1 cut(s) 26
BbvI GCAGC 1 cut(s) 163
BciT130I CCWGG 1 cut(s) 113
BciVI GTATCC 1 cut(s) 145
BfuI GTATCC 1 cut(s) 145
BglII AGATCT 1 cut(s) 43
BisI GCNGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 178
Bme1390I CCNGG 1 cut(s) 113
Bme18I GGWCC 1 cut(s) 26
BmgT120I GGNCC 1 cut(s) 26
BmrFI CCNGG 1 cut(s) 113
BmrI ACTGGG 1 cut(s) 165
BmsI GCATC 1 cut(s) 163
BmuI ACTGGG 1 cut(s) 165
BsaHI GRCGYC 1 cut(s) 72
BsaJI CCNNGG 1 cut(s) 112
BsaXI ACNNNNNCTCC 2 cut(s) 176, 206
Bsc4I CCNNNNNNNGG 1 cut(s) 35
Bse1I ACTGG 1 cut(s) 160
BseBI CCWGG 1 cut(s) 113
BseDI CCNNGG 1 cut(s) 112
BseLI CCNNNNNNNGG 1 cut(s) 35
BseNI ACTGG 1 cut(s) 160
BseXI GCAGC 1 cut(s) 163
BslI CCNNNNNNNGG 1 cut(s) 35
Bsp143I GATC 2 cut(s) 43, 96
BsrI ACTGG 1 cut(s) 160
BssECI CCNNGG 1 cut(s) 112
BssMI GATC 2 cut(s) 43, 96
BssNI GRCGYC 1 cut(s) 72
Bst2UI CCWGG 1 cut(s) 113
Bst4CI ACNGT 2 cut(s) 86, 214
BstACI GRCGYC 1 cut(s) 72
BstKTI GATC 2 cut(s) 46, 99
BstMBI GATC 2 cut(s) 43, 96
BstNI CCWGG 1 cut(s) 113
BstNSI RCATGY 1 cut(s) 230
BstSCI CCNGG 1 cut(s) 111
BstV1I GCAGC 1 cut(s) 163
BstX2I RGATCY 1 cut(s) 43
BstYI RGATCY 1 cut(s) 43
BsuI GTATCC 1 cut(s) 145
BtsIMutI CAGTG 1 cut(s) 210
Cfr13I GGNCC 1 cut(s) 26
CseI GACGC 1 cut(s) 61
Csp6I GTAC 1 cut(s) 230
CviAII CATG 4 cut(s) 63, 89, 196, 227
CviJI RGCY 3 cut(s) 32, 104, 191
CviKI_1 RGCY 3 cut(s) 32, 104, 191
CviQI GTAC 1 cut(s) 230
DpnI GATC 2 cut(s) 45, 98
DpnII GATC 2 cut(s) 43, 96
Eco47I GGWCC 1 cut(s) 26
EcoRII CCWGG 1 cut(s) 111
EcoT22I ATGCAT 1 cut(s) 228
FaeI CATG 4 cut(s) 66, 92, 199, 230
FaiI YATR 9 cut(s) 8, 41, 64, 90, 101, 197, 224, 228, 236
FatI CATG 4 cut(s) 62, 88, 195, 226
Fnu4HI GCNGC 1 cut(s) 177
Fsp4HI GCNGC 1 cut(s) 177
GluI GCNGC 1 cut(s) 177
HgaI GACGC 1 cut(s) 61
Hin1I GRCGYC 1 cut(s) 72
Hin1II CATG 4 cut(s) 66, 92, 199, 230
HphI GGTGA 1 cut(s) 182
HpyAV CCTTC 2 cut(s) 17, 141
HpyCH4III ACNGT 2 cut(s) 86, 214
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 1 cut(s) 226
HpySE526I ACGT 1 cut(s) 138
Hsp92I GRCGYC 1 cut(s) 72
Hsp92II CATG 4 cut(s) 66, 92, 199, 230
Kzo9I GATC 2 cut(s) 43, 96
LpnPI CCDG 5 cut(s) 42, 61, 98, 125, 141
Lsp1109I GCAGC 1 cut(s) 163
LweI GCATC 1 cut(s) 163
MaeII ACGT 1 cut(s) 138
MalI GATC 2 cut(s) 45, 98
MboI GATC 2 cut(s) 43, 96
MflI RGATCY 1 cut(s) 43
MnlI CCTC 1 cut(s) 202
Mph1103I ATGCAT 1 cut(s) 228
MseI TTAA 1 cut(s) 207
MslI CAYNNNNRTG 1 cut(s) 87
MspR9I CCNGG 1 cut(s) 113
MvaI CCWGG 1 cut(s) 113
NdeII GATC 2 cut(s) 43, 96
NlaIII CATG 4 cut(s) 66, 92, 199, 230
NsiI ATGCAT 1 cut(s) 228
NspI RCATGY 1 cut(s) 230
PflMI CCANNNNNTGG 1 cut(s) 35
PkrI GCNGC 1 cut(s) 178
Psp6I CCWGG 1 cut(s) 111
PspGI CCWGG 1 cut(s) 111
PspPI GGNCC 1 cut(s) 26
PsuI RGATCY 1 cut(s) 43
RsaI GTAC 1 cut(s) 231
RsaNI GTAC 1 cut(s) 230
RseI CAYNNNNRTG 1 cut(s) 87
SaqAI TTAA 1 cut(s) 207
SatI GCNGC 1 cut(s) 177
Sau3AI GATC 2 cut(s) 43, 96
Sau96I GGNCC 1 cut(s) 26
ScrFI CCNGG 1 cut(s) 113
SetI ASST 3 cut(s) 28, 34, 141
SfaNI GCATC 1 cut(s) 163
SinI GGWCC 1 cut(s) 26
SmiMI CAYNNNNRTG 1 cut(s) 87
StyD4I CCNGG 1 cut(s) 111
TaaI ACNGT 2 cut(s) 86, 214
TaiI ACGT 1 cut(s) 141
TatI WGTACW 1 cut(s) 229
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TscAI CASTG 1 cut(s) 217
TseI GCWGC 1 cut(s) 176
TspDTI ATGAA 1 cut(s) 212
TspGWI ACGGA 1 cut(s) 164
TspRI CASTG 1 cut(s) 217
Van91I CCANNNNNTGG 1 cut(s) 35
VpaK11BI GGWCC 1 cut(s) 26
XceI RCATGY 1 cut(s) 230
Zsp2I ATGCAT 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.