Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001841

Physical Location & Seq

Genomic Coordinates Reverse (-)

4726529 .. 4729673

Gene Structure 3145 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG068900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGAGGTTCAAAGGGAGATTAAGTTGTTGCCTTATAAGGTTGTGAACATAGATGGGAAGCCTTATATTCAGGTGAAGTTTAGAGGTGAAACCAAGGTGTTTAGCCCTGAGGAAATCAGTGCTATGATATTGACTAAGATGAAGGAAACAGCTGAGGCTAGCTTATTTGGGGAAGAAGATCAAAGACGCTCTCATAACTGTTCCAGATACTATTGGCCTTGTCGAGTTTGCACGTATAGATTATTAGCTTATGTAATGTATTGTATAATTAATATGTACATCGTTCATATTCCATCAGTAATATGTACATCGTACATGTATGAGGTTAGTCTAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005788 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016592 GO:0022414 GO:0030154 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0070013 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04918 ko05020 map03060 map04141 map04918 map05020

Pfam Domains

Protein Families

HSP70

Protein Analysis

112

Amino Acids

13.27

Weight (kDa)

8.26

Isoelectric Point (pI)

59.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	2 - 55	4.4e-12	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001841)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g26910 FvH4_2g01780 FvH4_2g01930 FvH4_2g04820 FvH4_2g04841 FvH4_3g29971
malus_domestica	MD01G1129300.v1.1 MD01G1129600.v1.1
pyrus_communis	pycom04g11280 pycom07g18490 pycom12g13460 pycom14g02390
rosa_chinensis	RchiOBHm_Chr6g0244981 RchiOBHm_Chr7g0242871
rosa_laevigata	RLG00000025347
rosa_multiflora	Rmu_sc0000785.1_g000034 Rmu_sc0033687.1_g000001 Rmu_sc0036726.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255620 Rroxscaffold_6G00423680 Rroxscaffold_6G00424170
rosa_rugosa	Rorug07G0107600
rosa_samantha	Rh1BG301100 Rh1DG331900 Rh1DG332900 Rh1DG333000 Rh1DG333100 Rh1DG333400 Rh3AG068100 Rh3BG070400 Rh3BG070600 Rh3BG070700 Rh3CG068700 Rh3CG068900 Rh3CG069000 Rh3DG070500 Rh6BG014700 Rh6BG017000 Rh6BG022500 Rh6CG013700 Rh6CG021100 Rh6CG117700 Rh7AG473000 Rh7DG192400 Rh7DG193800 Rh7DG196100 Rh7DG196300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	36
AfaI	GTAC	3 cut(s)	278, 307, 314
AflIII	ACRYGT	1 cut(s)	315
AgsI	TTSAA	1 cut(s)	11
AluBI	AGCT	3 cut(s)	152, 162, 248
AluI	AGCT	3 cut(s)	152, 162, 248
AoxI	GGCC	1 cut(s)	215
AseI	ATTAAT	1 cut(s)	270
AsuHPI	GGTGA	2 cut(s)	85, 98
AsuNHI	GCTAGC	1 cut(s)	158
AxyI	CCTNAGG	1 cut(s)	108
BbvCI	CCTCAGC	1 cut(s)	153
BccI	CCATC	2 cut(s)	47, 301
BfaI	CTAG	1 cut(s)	159
BmtI	GCTAGC	1 cut(s)	162
Bpu10I	CCTNAGC	1 cut(s)	153
BsaAI	YACGTR	1 cut(s)	234
BsaJI	CCNNGG	1 cut(s)	93
BsaXI	ACNNNNNCTCC	2 cut(s)	8, 38
Bse21I	CCTNAGG	1 cut(s)	108
BseDI	CCNNGG	1 cut(s)	93
BseMII	CTCAG	2 cut(s)	99, 144
BshFI	GGCC	1 cut(s)	217
BsnI	GGCC	1 cut(s)	217
Bsp1407I	TGTACA	2 cut(s)	276, 305
Bsp143I	GATC	1 cut(s)	178
BspANI	GGCC	1 cut(s)	217
BspCNI	CTCAG	2 cut(s)	100, 145
BspOI	GCTAGC	1 cut(s)	162
BsrGI	TGTACA	2 cut(s)	276, 305
BssECI	CCNNGG	1 cut(s)	93
BssMI	GATC	1 cut(s)	178
BssT1I	CCWWGG	1 cut(s)	93
Bst4CI	ACNGT	1 cut(s)	200
BstAUI	TGTACA	2 cut(s)	276, 305
BstBAI	YACGTR	1 cut(s)	234
BstC8I	GCNNGC	1 cut(s)	160
BstDEI	CTNAG	3 cut(s)	108, 135, 153
BstKTI	GATC	1 cut(s)	181
BstMBI	GATC	1 cut(s)	178
BstNSI	RCATGY	1 cut(s)	319
Bsu36I	CCTNAGG	1 cut(s)	108
BsuRI	GGCC	1 cut(s)	217
BtsIMutI	CAGTG	1 cut(s)	124
Cac8I	GCNNGC	1 cut(s)	160
CseI	GACGC	1 cut(s)	195
Csp6I	GTAC	3 cut(s)	277, 306, 313
CviAII	CATG	1 cut(s)	316
CviJI	RGCY	7 cut(s)	61, 105, 152, 158, 162, 217, 248
CviKI_1	RGCY	7 cut(s)	61, 105, 152, 158, 162, 217, 248
CviQI	GTAC	3 cut(s)	277, 306, 313
DdeI	CTNAG	3 cut(s)	108, 135, 153
DpnI	GATC	1 cut(s)	180
DpnII	GATC	1 cut(s)	178
Eco130I	CCWWGG	1 cut(s)	93
Eco81I	CCTNAGG	1 cut(s)	108
EcoT14I	CCWWGG	1 cut(s)	93
ErhI	CCWWGG	1 cut(s)	93
FaeI	CATG	1 cut(s)	319
FatI	CATG	1 cut(s)	315
FspBI	CTAG	1 cut(s)	159
HaeIII	GGCC	1 cut(s)	217
HgaI	GACGC	1 cut(s)	195
Hin1II	CATG	1 cut(s)	319
HphI	GGTGA	2 cut(s)	85, 98
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188III	TCNNGA	1 cut(s)	204
Hpy8I	GTNNAC	1 cut(s)	46
HpyAV	CCTTC	1 cut(s)	136
HpyCH4III	ACNGT	1 cut(s)	200
HpyCH4IV	ACGT	1 cut(s)	233
HpyCH4V	TGCA	1 cut(s)	231
HpyF3I	CTNAG	3 cut(s)	108, 135, 153
HpySE526I	ACGT	1 cut(s)	233
Hsp92II	CATG	1 cut(s)	319
Kzo9I	GATC	1 cut(s)	178
LpnPI	CCDG	3 cut(s)	56, 120, 217
MaeI	CTAG	1 cut(s)	159
MaeII	ACGT	1 cut(s)	233
MalI	GATC	1 cut(s)	180
MboI	GATC	1 cut(s)	178
MboII	GAAGA	2 cut(s)	185, 188
MluCI	AATT	1 cut(s)	267
MnlI	CCTC	4 cut(s)	77, 103, 148, 316
MseI	TTAA	2 cut(s)	21, 270
MspA1I	CMGCKG	1 cut(s)	152
NdeII	GATC	1 cut(s)	178
NheI	GCTAGC	1 cut(s)	158
NlaIII	CATG	1 cut(s)	319
NspI	RCATGY	1 cut(s)	319
PciI	ACATGT	1 cut(s)	315
Ppu21I	YACGTR	1 cut(s)	234
PscI	ACATGT	1 cut(s)	315
PshBI	ATTAAT	1 cut(s)	270
PsiI	TTATAA	1 cut(s)	36
PvuII	CAGCTG	1 cut(s)	152
RsaI	GTAC	3 cut(s)	278, 307, 314
RsaNI	GTAC	3 cut(s)	277, 306, 313
SaqAI	TTAA	2 cut(s)	21, 270
Sau3AI	GATC	1 cut(s)	178
SgeI	CNNG	9 cut(s)	83, 106, 119, 171, 216, 231, 236, 244, 328
Sse9I	AATT	1 cut(s)	267
SspMI	CTAG	1 cut(s)	159
StyI	CCWWGG	1 cut(s)	93
TaaI	ACNGT	1 cut(s)	200
TaiI	ACGT	1 cut(s)	236
TaqI	TCGA	1 cut(s)	223
TasI	AATT	1 cut(s)	267
TatI	WGTACW	2 cut(s)	276, 305
Tru1I	TTAA	2 cut(s)	21, 270
Tru9I	TTAA	2 cut(s)	21, 270
TscAI	CASTG	1 cut(s)	124
TspDTI	ATGAA	2 cut(s)	155, 275
TspRI	CASTG	1 cut(s)	124
VspI	ATTAAT	1 cut(s)	270
XceI	RCATGY	1 cut(s)	319
XspI	CTAG	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.