RchiOBHm_Chr6g0244981
HSP70 Family

Heat shock cognate 70 kDa protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001841
Physical Location & Seq
Forward (+)
915804 .. 916341
538 bp
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UTR
Exon/CDS
Intron
PRQ21956

Sequence Viewer

Length: 390 bp
ATGGCATTGGTGGCTGAGAAAGCCAAAGGTGAGGGTCCAGCAATTGGTATCGACCTCGGAACAACATATTCATGTGTTGGTGTTTGGCAACATGATCGGGTCGAGATCATAGCCAATGACCAAGGCAACAGAACAACACCGTGTTATGTTGCTTTCACTTACACACGGCGTTTGATAGGTGATGCTGCCAAGAACCAGGCCGTCATGAACCCCATTAATACTGTTTTTGATGCAAAACGTTTGATTGGTAGGAGATTCAGTGATTCATGTTTTAGAAGTGACATGAAGTTATGGCCTTTCAAGGTGATTTCTGGCGATAATAACAAACCGATGATTGTGGTCAAGTATAAGAATGAAACAAAACAATTAGCTCCGGAAGAGATATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169
Pfam Domains
Protein Families
HSP70

Protein Analysis

129

Amino Acids

14.41

Weight (kDa)

9.05

Isoelectric Point (pI)

37.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 14 - 129 3.8e-43 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 44
AccIII TCCGGA 1 cut(s) 373
AclI AACGTT 1 cut(s) 238
AfiI CCNNNNNNNGG 1 cut(s) 44
AgsI TTSAA 1 cut(s) 301
AjnI CCWGG 1 cut(s) 195
AluBI AGCT 1 cut(s) 371
AluI AGCT 1 cut(s) 371
Aor13HI TCCGGA 1 cut(s) 373
AoxI GGCC 2 cut(s) 198, 293
ApeKI GCWGC 1 cut(s) 185
AseI ATTAAT 1 cut(s) 216
AspS9I GGNCC 1 cut(s) 35
AsuHPI GGTGA 3 cut(s) 41, 191, 316
AvaII GGWCC 1 cut(s) 35
BbvI GCAGC 1 cut(s) 172
BceAI ACGGC 2 cut(s) 182, 185
BcgI CGANNNNNNTGC 2 cut(s) 77, 111
BciT130I CCWGG 1 cut(s) 197
BisI GCNGC 1 cut(s) 186
BlsI GCNGC 1 cut(s) 187
Bme1390I CCNGG 1 cut(s) 197
Bme18I GGWCC 1 cut(s) 35
BmgT120I GGNCC 1 cut(s) 35
BmiI GGNNCC 1 cut(s) 36
BmrFI CCNGG 1 cut(s) 197
BmsI GCATC 2 cut(s) 172, 220
BsaJI CCNNGG 2 cut(s) 55, 121
BsaWI WCCGGW 1 cut(s) 373
BsaXI ACNNNNNCTCC 2 cut(s) 244, 274
Bsc4I CCNNNNNNNGG 1 cut(s) 44
BseAI TCCGGA 1 cut(s) 373
BseBI CCWGG 1 cut(s) 197
BseDI CCNNGG 2 cut(s) 55, 121
BseLI CCNNNNNNNGG 1 cut(s) 44
BseMII CTCAG 1 cut(s) 6
BseXI GCAGC 1 cut(s) 172
BshFI GGCC 2 cut(s) 200, 295
BsiSI CCGG 1 cut(s) 374
BslI CCNNNNNNNGG 1 cut(s) 44
BsnI GGCC 2 cut(s) 200, 295
Bsp13I TCCGGA 1 cut(s) 373
Bsp143I GATC 2 cut(s) 94, 105
BspANI GGCC 2 cut(s) 200, 295
BspCNI CTCAG 1 cut(s) 7
BspEI TCCGGA 1 cut(s) 373
BspHI TCATGA 2 cut(s) 204, 386
BspLI GGNNCC 1 cut(s) 36
BssECI CCNNGG 2 cut(s) 55, 121
BssMI GATC 2 cut(s) 94, 105
BssT1I CCWWGG 1 cut(s) 121
Bst2UI CCWGG 1 cut(s) 197
Bst4CI ACNGT 2 cut(s) 141, 223
Bst6I CTCTTC 1 cut(s) 372
BstDEI CTNAG 1 cut(s) 15
BstKTI GATC 2 cut(s) 97, 108
BstMBI GATC 2 cut(s) 94, 105
BstMWI GCNNNNNNNGC 2 cut(s) 11, 20
BstNI CCWGG 1 cut(s) 197
BstSCI CCNGG 1 cut(s) 195
BstV1I GCAGC 1 cut(s) 172
BsuRI GGCC 2 cut(s) 200, 295
BtsIMutI CAGTG 1 cut(s) 265
CciI TCATGA 2 cut(s) 204, 386
Cfr13I GGNCC 1 cut(s) 35
CviAII CATG 6 cut(s) 72, 92, 205, 267, 283, 387
CviJI RGCY 6 cut(s) 14, 23, 113, 200, 295, 371
CviKI_1 RGCY 6 cut(s) 14, 23, 113, 200, 295, 371
DdeI CTNAG 1 cut(s) 15
DpnI GATC 2 cut(s) 96, 107
DpnII GATC 2 cut(s) 94, 105
Eam1104I CTCTTC 1 cut(s) 372
EarI CTCTTC 1 cut(s) 372
Eco130I CCWWGG 1 cut(s) 121
Eco32I GATATC 1 cut(s) 384
Eco47I GGWCC 1 cut(s) 35
EcoRII CCWGG 1 cut(s) 195
EcoRV GATATC 1 cut(s) 384
EcoT14I CCWWGG 1 cut(s) 121
ErhI CCWWGG 1 cut(s) 121
FaeI CATG 6 cut(s) 75, 95, 208, 270, 286, 390
FatI CATG 6 cut(s) 71, 91, 204, 266, 282, 386
Fnu4HI GCNGC 1 cut(s) 186
Fsp4HI GCNGC 1 cut(s) 186
GluI GCNGC 1 cut(s) 186
HaeIII GGCC 2 cut(s) 200, 295
HapII CCGG 1 cut(s) 374
Hin1II CATG 6 cut(s) 75, 95, 208, 270, 286, 390
HinfI GANTC 2 cut(s) 255, 263
HpaII CCGG 1 cut(s) 374
HphI GGTGA 3 cut(s) 41, 191, 316
Hpy188I TCNGA 1 cut(s) 59
Hpy188III TCNNGA 4 cut(s) 103, 205, 374, 387
HpyCH4III ACNGT 2 cut(s) 141, 223
HpyCH4IV ACGT 1 cut(s) 238
HpyCH4V TGCA 1 cut(s) 233
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 20
HpyF3I CTNAG 1 cut(s) 15
HpySE526I ACGT 1 cut(s) 238
Hsp92II CATG 6 cut(s) 75, 95, 208, 270, 286, 390
Kpn2I TCCGGA 1 cut(s) 373
Kzo9I GATC 2 cut(s) 94, 105
LmnI GCTCC 1 cut(s) 376
LpnPI CCDG 4 cut(s) 51, 182, 209, 297
Lsp1109I GCAGC 1 cut(s) 172
LweI GCATC 2 cut(s) 172, 220
MaeII ACGT 1 cut(s) 238
MaeIII GTNAC 1 cut(s) 278
MalI GATC 2 cut(s) 96, 107
MboI GATC 2 cut(s) 94, 105
MboII GAAGA 1 cut(s) 389
MfeI CAATTG 1 cut(s) 42
MluCI AATT 2 cut(s) 42, 365
MnlI CCTC 2 cut(s) 25, 65
MroI TCCGGA 1 cut(s) 373
MseI TTAA 1 cut(s) 216
MslI CAYNNNNRTG 1 cut(s) 70
MspI CCGG 1 cut(s) 374
MspR9I CCNGG 1 cut(s) 197
MunI CAATTG 1 cut(s) 42
MvaI CCWGG 1 cut(s) 197
MwoI GCNNNNNNNGC 2 cut(s) 11, 20
NdeII GATC 2 cut(s) 94, 105
NlaIII CATG 6 cut(s) 75, 95, 208, 270, 286, 390
NlaIV GGNNCC 1 cut(s) 36
NmuCI GTSAC 1 cut(s) 278
PagI TCATGA 2 cut(s) 204, 386
PfeI GAWTC 2 cut(s) 255, 263
PflMI CCANNNNNTGG 1 cut(s) 44
PkrI GCNGC 1 cut(s) 187
PshBI ATTAAT 1 cut(s) 216
Psp1406I AACGTT 1 cut(s) 238
Psp6I CCWGG 1 cut(s) 195
PspGI CCWGG 1 cut(s) 195
PspN4I GGNNCC 1 cut(s) 36
PspPI GGNCC 1 cut(s) 35
RseI CAYNNNNRTG 1 cut(s) 70
SaqAI TTAA 1 cut(s) 216
SatI GCNGC 1 cut(s) 186
Sau3AI GATC 2 cut(s) 94, 105
Sau96I GGNCC 1 cut(s) 35
ScrFI CCNGG 1 cut(s) 197
SetI ASST 6 cut(s) 31, 57, 181, 241, 306, 373
SfaNI GCATC 2 cut(s) 172, 220
SinI GGWCC 1 cut(s) 35
SmiMI CAYNNNNRTG 1 cut(s) 70
Sse9I AATT 2 cut(s) 42, 365
StyD4I CCNGG 1 cut(s) 195
StyI CCWWGG 1 cut(s) 121
TaaI ACNGT 2 cut(s) 141, 223
TaiI ACGT 1 cut(s) 241
TaqI TCGA 2 cut(s) 51, 102
TasI AATT 2 cut(s) 42, 365
TfiI GAWTC 2 cut(s) 255, 263
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TscAI CASTG 1 cut(s) 265
TseFI GTSAC 1 cut(s) 278
TseI GCWGC 1 cut(s) 185
Tsp45I GTSAC 1 cut(s) 278
TspDTI ATGAA 5 cut(s) 60, 221, 255, 299, 369
TspRI CASTG 1 cut(s) 265
Van91I CCANNNNNTGG 1 cut(s) 44
VpaK11BI GGWCC 1 cut(s) 35
VspI ATTAAT 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.