Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036726.1

Orthogroup ID

OG0001841

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 445

Gene Structure 445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036726.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 346 bp

agaaagcccagaactacagaagatgaagaacaccagagcattgtcgttgacgtttttgcttctctttctttcagaattcttgtgtggaatagcattggcggcagaaagttcatcgaagccggagaccgtgatcggaatcgatctcggaaccacgtattcttgtgtgggggtgtacaggaatggcaacgtagagatcatagtaaacgaccagggcaataggatcacaccctcttgggttgcattcacggacaccgagcggttgatcggagaggcggcaaagaatcaagcccctcagaactcggaacgtacaattttcgatgtcaagcggctcatagggagaaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005788 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016592 GO:0022414 GO:0030154 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0070013 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04918 ko05020 map03060 map04141 map04918 map05020

Pfam Domains

Protein Families

HSP70

Protein Analysis

114

Amino Acids

12.61

Weight (kDa)

6.57

Isoelectric Point (pI)

40.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001841)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g26910 FvH4_2g01780 FvH4_2g01930 FvH4_2g04820 FvH4_2g04841 FvH4_3g29971
malus_domestica	MD01G1129300.v1.1 MD01G1129600.v1.1
pyrus_communis	pycom04g11280 pycom07g18490 pycom12g13460 pycom14g02390
rosa_chinensis	RchiOBHm_Chr6g0244981 RchiOBHm_Chr7g0242871
rosa_laevigata	RLG00000025347
rosa_multiflora	Rmu_sc0000785.1_g000034 Rmu_sc0033687.1_g000001 Rmu_sc0036726.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255620 Rroxscaffold_6G00423680 Rroxscaffold_6G00424170
rosa_rugosa	Rorug07G0107600
rosa_samantha	Rh1BG301100 Rh1DG331900 Rh1DG332900 Rh1DG333000 Rh1DG333100 Rh1DG333400 Rh3AG068100 Rh3BG070400 Rh3BG070600 Rh3BG070700 Rh3CG068700 Rh3CG068900 Rh3CG069000 Rh3DG070500 Rh6BG014700 Rh6BG017000 Rh6BG022500 Rh6CG013700 Rh6CG021100 Rh6CG117700 Rh7AG473000 Rh7DG192400 Rh7DG193800 Rh7DG196100 Rh7DG196300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	257
AciI	CCGC	4 cut(s)	99, 257, 273, 326
AclWI	GGATC	1 cut(s)	228
AcsI	RAATTY	1 cut(s)	75
AfaI	GTAC	2 cut(s)	174, 308
AjnI	CCWGG	1 cut(s)	208
Alw26I	GTCTC	1 cut(s)	117
AlwI	GGATC	1 cut(s)	228
ApoI	RAATTY	1 cut(s)	75
BciT130I	CCWGG	1 cut(s)	210
BcoDI	GTCTC	1 cut(s)	117
BfmI	CTRYAG	1 cut(s)	15
BisI	GCNGC	3 cut(s)	100, 274, 327
BlsI	GCNGC	3 cut(s)	101, 275, 328
Bme1390I	CCNGG	1 cut(s)	210
BmiI	GGNNCC	1 cut(s)	149
BmrFI	CCNGG	1 cut(s)	210
Bsa29I	ATCGAT	1 cut(s)	139
BsaAI	YACGTR	1 cut(s)	154
BsaBI	GATNNNNATC	1 cut(s)	135
BsaI	GGTCTC	1 cut(s)	117
BsaJI	CCNNGG	1 cut(s)	209
Bse8I	GATNNNNATC	1 cut(s)	135
BseBI	CCWGG	1 cut(s)	210
BseCI	ATCGAT	1 cut(s)	139
BseDI	CCNNGG	1 cut(s)	209
BseJI	GATNNNNATC	1 cut(s)	135
BseMII	CTCAG	1 cut(s)	306
BshVI	ATCGAT	1 cut(s)	139
BsiSI	CCGG	1 cut(s)	120
BsmAI	GTCTC	1 cut(s)	117
BsmI	GAATGC	1 cut(s)	240
Bso31I	GGTCTC	1 cut(s)	117
Bsp1407I	TGTACA	1 cut(s)	172
Bsp143I	GATC	5 cut(s)	130, 140, 193, 220, 262
BspACI	CCGC	4 cut(s)	99, 257, 273, 326
BspCNI	CTCAG	1 cut(s)	305
BspDI	ATCGAT	1 cut(s)	139
BspLI	GGNNCC	1 cut(s)	149
BspPI	GGATC	1 cut(s)	228
BspTNI	GGTCTC	1 cut(s)	117
BsrBI	CCGCTC	1 cut(s)	257
BsrGI	TGTACA	1 cut(s)	172
BssECI	CCNNGG	1 cut(s)	209
BssMI	GATC	5 cut(s)	130, 140, 193, 220, 262
Bst2UI	CCWGG	1 cut(s)	210
Bst4CI	ACNGT	1 cut(s)	128
BstAUI	TGTACA	1 cut(s)	172
BstBAI	YACGTR	1 cut(s)	154
BstDEI	CTNAG	1 cut(s)	292
BstKTI	GATC	5 cut(s)	133, 143, 196, 223, 265
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	5 cut(s)	130, 140, 193, 220, 262
BstMWI	GCNNNNNNNGC	1 cut(s)	99
BstNI	CCWGG	1 cut(s)	210
BstSCI	CCNGG	1 cut(s)	208
BstSFI	CTRYAG	1 cut(s)	15
Bsu15I	ATCGAT	1 cut(s)	139
BsuTUI	ATCGAT	1 cut(s)	139
ClaI	ATCGAT	1 cut(s)	139
Csp6I	GTAC	2 cut(s)	173, 307
CviJI	RGCY	4 cut(s)	7, 119, 288, 329
CviKI_1	RGCY	4 cut(s)	7, 119, 288, 329
CviQI	GTAC	2 cut(s)	173, 307
DdeI	CTNAG	1 cut(s)	292
DpnI	GATC	5 cut(s)	132, 142, 195, 222, 264
DpnII	GATC	5 cut(s)	130, 140, 193, 220, 262
Eco31I	GGTCTC	1 cut(s)	117
EcoRI	GAATTC	1 cut(s)	75
EcoRII	CCWGG	1 cut(s)	208
FaiI	YATR	2 cut(s)	198, 333
Fnu4HI	GCNGC	3 cut(s)	100, 274, 327
Fsp4HI	GCNGC	3 cut(s)	100, 274, 327
GluI	GCNGC	3 cut(s)	100, 274, 327
HapII	CCGG	1 cut(s)	120
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HinfI	GANTC	2 cut(s)	136, 281
HpaII	CCGG	1 cut(s)	120
Hpy166II	GTNNAC	3 cut(s)	49, 173, 203
Hpy188I	TCNGA	6 cut(s)	74, 135, 147, 267, 295, 302
Hpy8I	GTNNAC	3 cut(s)	49, 173, 203
HpyAV	CCTTC	1 cut(s)	334
HpyCH4III	ACNGT	1 cut(s)	128
HpyCH4IV	ACGT	4 cut(s)	51, 153, 187, 305
HpyCH4V	TGCA	1 cut(s)	240
HpyF10VI	GCNNNNNNNGC	1 cut(s)	99
HpyF3I	CTNAG	1 cut(s)	292
HpySE526I	ACGT	4 cut(s)	51, 153, 187, 305
Kzo9I	GATC	5 cut(s)	130, 140, 193, 220, 262
LpnPI	CCDG	6 cut(s)	22, 47, 133, 161, 195, 222
MaeII	ACGT	4 cut(s)	51, 153, 187, 305
MalI	GATC	5 cut(s)	132, 142, 195, 222, 264
MbiI	CCGCTC	1 cut(s)	257
MboI	GATC	5 cut(s)	130, 140, 193, 220, 262
MboII	GAAGA	2 cut(s)	32, 38
MluCI	AATT	2 cut(s)	75, 310
MnlI	CCTC	3 cut(s)	239, 263, 301
MspI	CCGG	1 cut(s)	120
MspR9I	CCNGG	1 cut(s)	210
Mva1269I	GAATGC	1 cut(s)	240
MvaI	CCWGG	1 cut(s)	210
MwoI	GCNNNNNNNGC	1 cut(s)	99
NdeII	GATC	5 cut(s)	130, 140, 193, 220, 262
NlaIV	GGNNCC	1 cut(s)	149
PctI	GAATGC	1 cut(s)	240
PfeI	GAWTC	2 cut(s)	136, 281
PkrI	GCNGC	3 cut(s)	101, 275, 328
Ppu21I	YACGTR	1 cut(s)	154
Psp6I	CCWGG	1 cut(s)	208
PspGI	CCWGG	1 cut(s)	208
PspN4I	GGNNCC	1 cut(s)	149
RsaI	GTAC	2 cut(s)	174, 308
RsaNI	GTAC	2 cut(s)	173, 307
SatI	GCNGC	3 cut(s)	100, 274, 327
Sau3AI	GATC	5 cut(s)	130, 140, 193, 220, 262
ScrFI	CCNGG	1 cut(s)	210
SetI	ASST	5 cut(s)	54, 156, 190, 308, 345
SfcI	CTRYAG	1 cut(s)	15
Sse9I	AATT	2 cut(s)	75, 310
SsiI	CCGC	4 cut(s)	99, 257, 273, 326
StyD4I	CCNGG	1 cut(s)	208
TaaI	ACNGT	1 cut(s)	128
TaiI	ACGT	4 cut(s)	54, 156, 190, 308
TaqI	TCGA	3 cut(s)	114, 139, 316
TasI	AATT	2 cut(s)	75, 310
TatI	WGTACW	1 cut(s)	172
TauI	GCSGC	3 cut(s)	102, 276, 329
TfiI	GAWTC	2 cut(s)	136, 281
TspDTI	ATGAA	2 cut(s)	39, 100
TspGWI	ACGGA	1 cut(s)	261
XapI	RAATTY	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.