Rh1DG332900
HSP70 Family

Belongs to the heat shock protein 70 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0001841
Physical Location & Seq
Forward (+)
55847622 .. 55852822
5201 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG332900.1

Sequence Viewer

Length: 264 bp
ATGGGCGGAGGAGGAGAGGGTCATGCAATAGGGATTGACTTGGGGACAACCTATTCATGCGTAGCAGTGTGGGAGCACGAGCATGTAGAAATCATAGTGAATGATCAAGGAAACAGGACAACTCCATCTTATGTTGCCTTCACTGACTCGGAGCTTTTCGTAGGCGACGCTGCATTTAACCAGATCATTAAAAATCCCACAAACTCAATCTTTGAAGAAGCCCTCATTCTGTCTTTTCAAGGACTTCAAGAAAGCCTTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169
Pfam Domains
Protein Families
HSP70

Protein Analysis

87

Amino Acids

9.41

Weight (kDa)

4.33

Isoelectric Point (pI)

28.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 9 - 72 7.6e-25 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 6
AgsI TTSAA 3 cut(s) 215, 239, 248
AluBI AGCT 1 cut(s) 154
AluI AGCT 1 cut(s) 154
Alw21I GWGCWC 1 cut(s) 78
ApeKI GCWGC 1 cut(s) 170
Asp700I GAANNNNTTC 1 cut(s) 255
BauI CACGAG 1 cut(s) 77
Bbv12I GWGCWC 1 cut(s) 78
BbvI GCAGC 1 cut(s) 157
BccI CCATC 1 cut(s) 133
BclI TGATCA 1 cut(s) 103
BisI GCNGC 1 cut(s) 171
BlsI GCNGC 1 cut(s) 172
BseRI GAGGAG 2 cut(s) 24, 27
BseXI GCAGC 1 cut(s) 157
BsiHKAI GWGCWC 1 cut(s) 78
BslFI GGGAC 1 cut(s) 58
BsmFI GGGAC 1 cut(s) 58
Bsp1286I GDGCHC 1 cut(s) 78
Bsp143I GATC 2 cut(s) 103, 183
BspACI CCGC 1 cut(s) 6
BssMI GATC 2 cut(s) 103, 183
BssSI CACGAG 1 cut(s) 77
Bst2BI CACGAG 1 cut(s) 77
BstKTI GATC 2 cut(s) 106, 186
BstMBI GATC 2 cut(s) 103, 183
BstNSI RCATGY 1 cut(s) 86
BstV1I GCAGC 1 cut(s) 157
BtsI GCAGTG 1 cut(s) 72
BtsIMutI CAGTG 3 cut(s) 72, 141, 259
CseI GACGC 1 cut(s) 176
CviAII CATG 3 cut(s) 23, 57, 83
CviJI RGCY 3 cut(s) 154, 221, 255
CviKI_1 RGCY 3 cut(s) 154, 221, 255
DpnI GATC 2 cut(s) 105, 185
DpnII GATC 2 cut(s) 103, 183
EciI GGCGGA 1 cut(s) 21
FaeI CATG 3 cut(s) 26, 60, 86
FaiI YATR 5 cut(s) 24, 58, 84, 95, 132
FalI AAGNNNNNCTT 1 cut(s) 240
FaqI GGGAC 1 cut(s) 58
FatI CATG 3 cut(s) 22, 56, 82
FbaI TGATCA 1 cut(s) 103
Fnu4HI GCNGC 1 cut(s) 171
Fsp4HI GCNGC 1 cut(s) 171
GluI GCNGC 1 cut(s) 171
HgaI GACGC 1 cut(s) 176
Hin1II CATG 3 cut(s) 26, 60, 86
HinfI GANTC 1 cut(s) 146
Hpy188I TCNGA 1 cut(s) 151
Hpy188III TCNNGA 1 cut(s) 248
Hpy99I CGWCG 1 cut(s) 170
HpyAV CCTTC 1 cut(s) 148
HpyCH4V TGCA 2 cut(s) 26, 173
Hsp92II CATG 3 cut(s) 26, 60, 86
Ksp22I TGATCA 1 cut(s) 103
Kzo9I GATC 2 cut(s) 103, 183
LmnI GCTCC 2 cut(s) 73, 151
LpnPI CCDG 2 cut(s) 100, 194
Lsp1109I GCAGC 1 cut(s) 157
MalI GATC 2 cut(s) 105, 185
MboI GATC 2 cut(s) 103, 183
MboII GAAGA 1 cut(s) 227
MhlI GDGCHC 1 cut(s) 78
MlyI GAGTC 1 cut(s) 140
MnlI CCTC 3 cut(s) 5, 10, 233
MroXI GAANNNNTTC 1 cut(s) 255
MseI TTAA 2 cut(s) 177, 189
MslI CAYNNNNRTG 1 cut(s) 81
NdeII GATC 2 cut(s) 103, 183
NlaIII CATG 3 cut(s) 26, 60, 86
NspI RCATGY 1 cut(s) 86
PdmI GAANNNNTTC 1 cut(s) 255
PkrI GCNGC 1 cut(s) 172
PleI GAGTC 1 cut(s) 140
PpsI GAGTC 1 cut(s) 140
RseI CAYNNNNRTG 1 cut(s) 81
SaqAI TTAA 2 cut(s) 177, 189
SatI GCNGC 1 cut(s) 171
Sau3AI GATC 2 cut(s) 103, 183
SchI GAGTC 1 cut(s) 140
SduI GDGCHC 1 cut(s) 78
SetI ASST 2 cut(s) 53, 156
SmiMI CAYNNNNRTG 1 cut(s) 81
SsiI CCGC 1 cut(s) 6
Tru1I TTAA 2 cut(s) 177, 189
Tru9I TTAA 2 cut(s) 177, 189
TscAI CASTG 2 cut(s) 72, 148
TseI GCWGC 1 cut(s) 170
TspDTI ATGAA 1 cut(s) 45
TspRI CASTG 2 cut(s) 72, 148
XceI RCATGY 1 cut(s) 86
XmnI GAANNNNTTC 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.