FvH4_3g29971
HSP70 Family

mediator of RNA polymerase II transcription subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0001841
Physical Location & Seq
Reverse (-)
23111727 .. 23112094
368 bp
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UTR
Exon/CDS
Intron
FvH4_3g29971.t1

Sequence Viewer

Length: 270 bp
ATGGCTAAAGAGGAAACTGTACATGCTATTGGGATTGATTTGGGAACTACAAATTCATGTGTCGCAGTATGGGAAACTGATCATGTCGAAATAATAGCAAACGATCAGGGAATGAGGATTACCCCATCTGTTGTTGCCTTCAGGGGTAGTCAGAAGTTAGTTGGTGATGCAGCCATTTACCAACTCAAAAGAAATCCTGCCAATTCTGTCTTTGATAAATTAGTTCTTATAAAGATTTCATGTTCAGAAGATCCTCAGTTGCAAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169
Pfam Domains
Protein Families
HSP70

Protein Analysis

90

Amino Acids

9.71

Weight (kDa)

5.16

Isoelectric Point (pI)

34.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 9 - 73 7.2e-23 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 230
AclWI GGATC 1 cut(s) 245
AcsI RAATTY 1 cut(s) 52
AcuI CTGAAG 1 cut(s) 124
AfaI GTAC 1 cut(s) 21
AlwI GGATC 1 cut(s) 245
ApeKI GCWGC 1 cut(s) 170
ApoI RAATTY 1 cut(s) 52
AsuHPI GGTGA 1 cut(s) 176
BbvI GCAGC 1 cut(s) 182
BccI CCATC 1 cut(s) 133
BclI TGATCA 1 cut(s) 79
BisI GCNGC 1 cut(s) 171
BlsI GCNGC 1 cut(s) 172
BmsI GCATC 1 cut(s) 157
BseMII CTCAG 1 cut(s) 269
BseXI GCAGC 1 cut(s) 182
Bsp1407I TGTACA 1 cut(s) 19
Bsp143I GATC 3 cut(s) 79, 103, 250
BspCNI CTCAG 1 cut(s) 268
BspPI GGATC 1 cut(s) 245
BsrGI TGTACA 1 cut(s) 19
BssMI GATC 3 cut(s) 79, 103, 250
Bst4CI ACNGT 1 cut(s) 19
BstAUI TGTACA 1 cut(s) 19
BstDEI CTNAG 1 cut(s) 255
BstKTI GATC 3 cut(s) 82, 106, 253
BstMBI GATC 3 cut(s) 79, 103, 250
BstNSI RCATGY 1 cut(s) 26
BstV1I GCAGC 1 cut(s) 182
BstX2I RGATCY 1 cut(s) 250
BstYI RGATCY 1 cut(s) 250
Csp6I GTAC 1 cut(s) 20
CviAII CATG 4 cut(s) 23, 57, 83, 240
CviJI RGCY 2 cut(s) 5, 173
CviKI_1 RGCY 2 cut(s) 5, 173
CviQI GTAC 1 cut(s) 20
DdeI CTNAG 1 cut(s) 255
DpnI GATC 3 cut(s) 81, 105, 252
DpnII GATC 3 cut(s) 79, 103, 250
Eco57I CTGAAG 1 cut(s) 124
FaeI CATG 4 cut(s) 26, 60, 86, 243
FaiI YATR 6 cut(s) 24, 58, 70, 84, 230, 241
FatI CATG 4 cut(s) 22, 56, 82, 239
FbaI TGATCA 1 cut(s) 79
Fnu4HI GCNGC 1 cut(s) 171
Fsp4HI GCNGC 1 cut(s) 171
GluI GCNGC 1 cut(s) 171
Hin1II CATG 4 cut(s) 26, 60, 86, 243
HphI GGTGA 1 cut(s) 176
Hpy188I TCNGA 2 cut(s) 153, 247
HpyAV CCTTC 1 cut(s) 148
HpyCH4III ACNGT 1 cut(s) 19
HpyCH4V TGCA 2 cut(s) 170, 262
HpyF3I CTNAG 1 cut(s) 255
Hsp92II CATG 4 cut(s) 26, 60, 86, 243
Ksp22I TGATCA 1 cut(s) 79
Kzo9I GATC 3 cut(s) 79, 103, 250
LpnPI CCDG 3 cut(s) 92, 127, 210
Lsp1109I GCAGC 1 cut(s) 182
LweI GCATC 1 cut(s) 157
MalI GATC 3 cut(s) 81, 105, 252
MboI GATC 3 cut(s) 79, 103, 250
MboII GAAGA 1 cut(s) 260
MflI RGATCY 1 cut(s) 250
MluCI AATT 4 cut(s) 52, 202, 218, 265
MnlI CCTC 3 cut(s) 4, 108, 264
NdeII GATC 3 cut(s) 79, 103, 250
NlaIII CATG 4 cut(s) 26, 60, 86, 243
NspI RCATGY 1 cut(s) 26
PkrI GCNGC 1 cut(s) 172
PsiI TTATAA 1 cut(s) 230
PsuI RGATCY 1 cut(s) 250
RsaI GTAC 1 cut(s) 21
RsaNI GTAC 1 cut(s) 20
SatI GCNGC 1 cut(s) 171
Sau3AI GATC 3 cut(s) 79, 103, 250
SfaNI GCATC 1 cut(s) 157
SgeI CNNG 7 cut(s) 35, 69, 95, 119, 154, 209, 252
Sse9I AATT 4 cut(s) 52, 202, 218, 265
TaaI ACNGT 1 cut(s) 19
TaqI TCGA 1 cut(s) 87
TasI AATT 4 cut(s) 52, 202, 218, 265
TatI WGTACW 1 cut(s) 19
TseI GCWGC 1 cut(s) 170
TspDTI ATGAA 2 cut(s) 45, 228
XapI RAATTY 1 cut(s) 52
XceI RCATGY 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.