Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001841

Physical Location & Seq

Genomic Coordinates Reverse (-)

4729464 .. 4737555

Gene Structure 8092 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG068100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGAGGTGAAGAATACCAAAGCGGTGTCATCGATATTTCTGCTCGTCTTTGTTTCAGACTTCTTGTGTGGGATGGCATTAGCTGCAAAGGGTTCATCTAATCCTTGGCCAGTGATCGGAATCAGCCTCGGAACCACCTATTCATGTGTGGGTGTATTTAATGATATGGAGGTTCAAAGGGAGATTAAGTTGTTGCCTTATAAGGTTGTGAACATAGATGGGAAGCCTTATATTCAGGTGAAGTTTAGAGGTGAAACCAAGGTGTTTAGCCCTGAGGAAATCAGTGCTATGATATTGACTAAGATGAAGGAAACAGCTGAGGCTAGCTTATTTGGGGAAGAAGATCAAAGACGCTCTCATAACTGTTCCAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005788 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016592 GO:0022414 GO:0030154 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0070013 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04918 ko05020 map03060 map04141 map04918 map05020

Pfam Domains

Protein Families

HSP70

Protein Analysis

124

Amino Acids

13.8

Weight (kDa)

7.68

Isoelectric Point (pI)

41.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	53 - 110	3.6e-13	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001841)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g26910 FvH4_2g01780 FvH4_2g01930 FvH4_2g04820 FvH4_2g04841 FvH4_3g29971
malus_domestica	MD01G1129300.v1.1 MD01G1129600.v1.1
pyrus_communis	pycom04g11280 pycom07g18490 pycom12g13460 pycom14g02390
rosa_chinensis	RchiOBHm_Chr6g0244981 RchiOBHm_Chr7g0242871
rosa_laevigata	RLG00000025347
rosa_multiflora	Rmu_sc0000785.1_g000034 Rmu_sc0033687.1_g000001 Rmu_sc0036726.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255620 Rroxscaffold_6G00423680 Rroxscaffold_6G00424170
rosa_rugosa	Rorug07G0107600
rosa_samantha	Rh1BG301100 Rh1DG331900 Rh1DG332900 Rh1DG333000 Rh1DG333100 Rh1DG333400 Rh3AG068100 Rh3BG070400 Rh3BG070600 Rh3BG070700 Rh3CG068700 Rh3CG068900 Rh3CG069000 Rh3DG070500 Rh6BG014700 Rh6BG017000 Rh6BG022500 Rh6CG013700 Rh6CG021100 Rh6CG117700 Rh7AG473000 Rh7DG192400 Rh7DG193800 Rh7DG196100 Rh7DG196300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	201
AciI	CCGC	1 cut(s)	23
AcoI	YGGCCR	1 cut(s)	107
AfiI	CCNNNNNNNGG	1 cut(s)	116
AgsI	TTSAA	1 cut(s)	176
AjnI	CCWGG	1 cut(s)	368
AluBI	AGCT	3 cut(s)	83, 317, 327
AluI	AGCT	3 cut(s)	83, 317, 327
AoxI	GGCC	1 cut(s)	107
ApeKI	GCWGC	1 cut(s)	83
AsuHPI	GGTGA	3 cut(s)	19, 250, 263
AsuNHI	GCTAGC	1 cut(s)	323
AxyI	CCTNAGG	1 cut(s)	273
BalI	TGGCCA	1 cut(s)	109
BbvCI	CCTCAGC	1 cut(s)	318
BbvI	GCAGC	1 cut(s)	70
BccI	CCATC	2 cut(s)	67, 212
BcgI	CGANNNNNNTGC	2 cut(s)	22, 56
BciT130I	CCWGG	1 cut(s)	370
BfaI	CTAG	1 cut(s)	324
BisI	GCNGC	1 cut(s)	84
BlsI	GCNGC	1 cut(s)	85
Bme1390I	CCNGG	1 cut(s)	370
BmiI	GGNNCC	1 cut(s)	133
BmrFI	CCNGG	1 cut(s)	370
BmtI	GCTAGC	1 cut(s)	327
Bpu10I	CCTNAGC	1 cut(s)	318
Bsa29I	ATCGAT	1 cut(s)	32
BsaBI	GATNNNNATC	1 cut(s)	119
BsaJI	CCNNGG	3 cut(s)	104, 127, 258
BsaXI	ACNNNNNCTCC	2 cut(s)	173, 203
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
Bse1I	ACTGG	1 cut(s)	110
Bse21I	CCTNAGG	1 cut(s)	273
Bse8I	GATNNNNATC	1 cut(s)	119
BseBI	CCWGG	1 cut(s)	370
BseCI	ATCGAT	1 cut(s)	32
BseDI	CCNNGG	3 cut(s)	104, 127, 258
BseGI	GGATG	1 cut(s)	78
BseJI	GATNNNNATC	1 cut(s)	119
BseLI	CCNNNNNNNGG	1 cut(s)	116
BseMII	CTCAG	2 cut(s)	264, 309
BseNI	ACTGG	1 cut(s)	110
BseXI	GCAGC	1 cut(s)	70
BshFI	GGCC	1 cut(s)	109
BshVI	ATCGAT	1 cut(s)	32
BslI	CCNNNNNNNGG	1 cut(s)	116
BsnI	GGCC	1 cut(s)	109
Bsp143I	GATC	2 cut(s)	114, 343
BspACI	CCGC	1 cut(s)	23
BspANI	GGCC	1 cut(s)	109
BspCNI	CTCAG	2 cut(s)	265, 310
BspDI	ATCGAT	1 cut(s)	32
BspLI	GGNNCC	1 cut(s)	133
BspOI	GCTAGC	1 cut(s)	327
BsrI	ACTGG	1 cut(s)	110
BssECI	CCNNGG	3 cut(s)	104, 127, 258
BssMI	GATC	2 cut(s)	114, 343
BssT1I	CCWWGG	2 cut(s)	104, 258
Bst2UI	CCWGG	1 cut(s)	370
Bst4CI	ACNGT	1 cut(s)	365
BstAPI	GCANNNNNTGC	1 cut(s)	83
BstC8I	GCNNGC	1 cut(s)	325
BstDEI	CTNAG	3 cut(s)	273, 300, 318
BstF5I	GGATG	1 cut(s)	78
BstKTI	GATC	2 cut(s)	117, 346
BstMBI	GATC	2 cut(s)	114, 343
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstNI	CCWGG	1 cut(s)	370
BstSCI	CCNGG	1 cut(s)	368
BstV1I	GCAGC	1 cut(s)	70
Bsu15I	ATCGAT	1 cut(s)	32
Bsu36I	CCTNAGG	1 cut(s)	273
BsuRI	GGCC	1 cut(s)	109
BsuTUI	ATCGAT	1 cut(s)	32
BtsCI	GGATG	1 cut(s)	78
BtsIMutI	CAGTG	2 cut(s)	117, 289
Cac8I	GCNNGC	1 cut(s)	325
ClaI	ATCGAT	1 cut(s)	32
CseI	GACGC	1 cut(s)	360
CviAII	CATG	1 cut(s)	144
CviJI	RGCY	8 cut(s)	83, 109, 126, 226, 270, 317, 323, 327
CviKI_1	RGCY	8 cut(s)	83, 109, 126, 226, 270, 317, 323, 327
DdeI	CTNAG	3 cut(s)	273, 300, 318
DpnI	GATC	2 cut(s)	116, 345
DpnII	GATC	2 cut(s)	114, 343
EaeI	YGGCCR	1 cut(s)	107
Eco130I	CCWWGG	2 cut(s)	104, 258
Eco81I	CCTNAGG	1 cut(s)	273
EcoRII	CCWGG	1 cut(s)	368
EcoT14I	CCWWGG	2 cut(s)	104, 258
ErhI	CCWWGG	2 cut(s)	104, 258
FaeI	CATG	1 cut(s)	147
FaiI	YATR	7 cut(s)	145, 167, 201, 215, 231, 290, 360
FatI	CATG	1 cut(s)	143
Fnu4HI	GCNGC	1 cut(s)	84
FokI	GGATG	1 cut(s)	85
Fsp4HI	GCNGC	1 cut(s)	84
FspBI	CTAG	1 cut(s)	324
GluI	GCNGC	1 cut(s)	84
HaeIII	GGCC	1 cut(s)	109
HgaI	GACGC	1 cut(s)	360
Hin1II	CATG	1 cut(s)	147
HinfI	GANTC	1 cut(s)	120
HphI	GGTGA	3 cut(s)	19, 250, 263
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	3 cut(s)	58, 119, 131
Hpy8I	GTNNAC	1 cut(s)	211
HpyAV	CCTTC	1 cut(s)	301
HpyCH4III	ACNGT	1 cut(s)	365
HpyCH4V	TGCA	1 cut(s)	86
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
HpyF3I	CTNAG	3 cut(s)	273, 300, 318
Hsp92II	CATG	1 cut(s)	147
Kzo9I	GATC	2 cut(s)	114, 343
LpnPI	CCDG	4 cut(s)	123, 221, 285, 355
Lsp1109I	GCAGC	1 cut(s)	70
MaeI	CTAG	1 cut(s)	324
MalI	GATC	2 cut(s)	116, 345
MboI	GATC	2 cut(s)	114, 343
MboII	GAAGA	3 cut(s)	22, 350, 353
MlsI	TGGCCA	1 cut(s)	109
MluNI	TGGCCA	1 cut(s)	109
MnlI	CCTC	5 cut(s)	137, 163, 242, 268, 313
Mox20I	TGGCCA	1 cut(s)	109
MscI	TGGCCA	1 cut(s)	109
MseI	TTAA	2 cut(s)	159, 186
Msp20I	TGGCCA	1 cut(s)	109
MspA1I	CMGCKG	1 cut(s)	317
MspR9I	CCNGG	1 cut(s)	370
MvaI	CCWGG	1 cut(s)	370
MwoI	GCNNNNNNNGC	1 cut(s)	83
NdeII	GATC	2 cut(s)	114, 343
NheI	GCTAGC	1 cut(s)	323
NlaIII	CATG	1 cut(s)	147
NlaIV	GGNNCC	1 cut(s)	133
PfeI	GAWTC	1 cut(s)	120
PkrI	GCNGC	1 cut(s)	85
PsiI	TTATAA	1 cut(s)	201
Psp6I	CCWGG	1 cut(s)	368
PspGI	CCWGG	1 cut(s)	368
PspN4I	GGNNCC	1 cut(s)	133
PvuII	CAGCTG	1 cut(s)	317
SaqAI	TTAA	2 cut(s)	159, 186
SatI	GCNGC	1 cut(s)	84
Sau3AI	GATC	2 cut(s)	114, 343
ScrFI	CCNGG	1 cut(s)	370
SsiI	CCGC	1 cut(s)	23
SspMI	CTAG	1 cut(s)	324
StyD4I	CCNGG	1 cut(s)	368
StyI	CCWWGG	2 cut(s)	104, 258
TaaI	ACNGT	1 cut(s)	365
TaqI	TCGA	1 cut(s)	32
TfiI	GAWTC	1 cut(s)	120
Tru1I	TTAA	2 cut(s)	159, 186
Tru9I	TTAA	2 cut(s)	159, 186
TscAI	CASTG	2 cut(s)	117, 289
TseI	GCWGC	1 cut(s)	83
TspDTI	ATGAA	3 cut(s)	84, 132, 320
TspRI	CASTG	2 cut(s)	117, 289
XspI	CTAG	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.