Rh6CG021100
HSP70 Family

Heat shock cognate 70 kDa

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0001841
Physical Location & Seq
Forward (+)
1975567 .. 1979057
3491 bp
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UTR
Exon/CDS
Intron
Rh6CG021100.1

Sequence Viewer

Length: 234 bp
ATGGCATTAGCGGCGAAAGACGAGGGTCCAGCTATCGGTATCGATCTCGGAACAACTAACTCATGCGTTGGCGTTTGGCAACACGATCGCGTTGAGATCATAGCCAATGATCAGGGCAACAGAACGACACCATCGTATGTTGCTTTTACTAATGTTGGCCGTTTGATCGGTGATGCTGCCAAGAACCAAGTCACCATCAACCCTATCAACACTGTTTTTGCACCTGATGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169
Pfam Domains
Protein Families
HSP70

Protein Analysis

77

Amino Acids

8.12

Weight (kDa)

4.65

Isoelectric Point (pI)

8.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 11 - 74 4.3e-27 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 90
AciI CCGC 1 cut(s) 11
AcoI YGGCCR 1 cut(s) 157
AfiI CCNNNNNNNGG 1 cut(s) 35
AluBI AGCT 1 cut(s) 32
AluI AGCT 1 cut(s) 32
AoxI GGCC 1 cut(s) 157
ApeKI GCWGC 1 cut(s) 176
AspS9I GGNCC 1 cut(s) 26
AsuHPI GGTGA 2 cut(s) 182, 184
AvaII GGWCC 1 cut(s) 26
BbvI GCAGC 1 cut(s) 163
BccI CCATC 2 cut(s) 139, 203
BceAI ACGGC 1 cut(s) 144
BcgI CGANNNNNNTGC 2 cut(s) 68, 102
BclI TGATCA 1 cut(s) 109
BisI GCNGC 2 cut(s) 12, 177
BlsI GCNGC 2 cut(s) 13, 178
Bme18I GGWCC 1 cut(s) 26
BmgT120I GGNCC 1 cut(s) 26
BmiI GGNNCC 1 cut(s) 27
BmsI GCATC 1 cut(s) 163
BoxI GACNNNNGTC 1 cut(s) 24
Bsa29I ATCGAT 1 cut(s) 42
Bsc4I CCNNNNNNNGG 1 cut(s) 35
BseCI ATCGAT 1 cut(s) 42
BseLI CCNNNNNNNGG 1 cut(s) 35
BseXI GCAGC 1 cut(s) 163
Bsh1236I CGCG 1 cut(s) 90
Bsh1285I CGRYCG 1 cut(s) 88
BshFI GGCC 1 cut(s) 159
BshVI ATCGAT 1 cut(s) 42
BsiEI CGRYCG 1 cut(s) 88
BslI CCNNNNNNNGG 1 cut(s) 35
BsnI GGCC 1 cut(s) 159
Bsp143I GATC 5 cut(s) 43, 85, 96, 109, 165
BspACI CCGC 1 cut(s) 11
BspANI GGCC 1 cut(s) 159
BspDI ATCGAT 1 cut(s) 42
BspFNI CGCG 1 cut(s) 90
BspLI GGNNCC 1 cut(s) 27
BssMI GATC 5 cut(s) 43, 85, 96, 109, 165
Bst4CI ACNGT 1 cut(s) 214
BstFNI CGCG 1 cut(s) 90
BstKTI GATC 5 cut(s) 46, 88, 99, 112, 168
BstMBI GATC 5 cut(s) 43, 85, 96, 109, 165
BstMCI CGRYCG 1 cut(s) 88
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstPAI GACNNNNGTC 1 cut(s) 24
BstUI CGCG 1 cut(s) 90
BstV1I GCAGC 1 cut(s) 163
Bsu15I ATCGAT 1 cut(s) 42
BsuRI GGCC 1 cut(s) 159
BsuTUI ATCGAT 1 cut(s) 42
BtsIMutI CAGTG 1 cut(s) 210
Cfr13I GGNCC 1 cut(s) 26
ClaI ATCGAT 1 cut(s) 42
CviAII CATG 1 cut(s) 63
CviJI RGCY 3 cut(s) 32, 104, 159
CviKI_1 RGCY 3 cut(s) 32, 104, 159
DpnI GATC 5 cut(s) 45, 87, 98, 111, 167
DpnII GATC 5 cut(s) 43, 85, 96, 109, 165
EaeI YGGCCR 1 cut(s) 157
Eco47I GGWCC 1 cut(s) 26
FaeI CATG 1 cut(s) 66
FaiI YATR 3 cut(s) 64, 101, 138
FatI CATG 1 cut(s) 62
FbaI TGATCA 1 cut(s) 109
Fnu4HI GCNGC 2 cut(s) 12, 177
Fsp4HI GCNGC 2 cut(s) 12, 177
GluI GCNGC 2 cut(s) 12, 177
HaeIII GGCC 1 cut(s) 159
Hin1II CATG 1 cut(s) 66
HphI GGTGA 2 cut(s) 182, 184
Hpy188I TCNGA 2 cut(s) 50, 233
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4V TGCA 1 cut(s) 221
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
Hsp92II CATG 1 cut(s) 66
Ksp22I TGATCA 1 cut(s) 109
Kzo9I GATC 5 cut(s) 43, 85, 96, 109, 165
LpnPI CCDG 2 cut(s) 42, 98
Lsp1109I GCAGC 1 cut(s) 163
LweI GCATC 1 cut(s) 163
MaeIII GTNAC 1 cut(s) 190
MalI GATC 5 cut(s) 45, 87, 98, 111, 167
MboI GATC 5 cut(s) 43, 85, 96, 109, 165
MnlI CCTC 1 cut(s) 16
MvnI CGCG 1 cut(s) 90
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 5 cut(s) 43, 85, 96, 109, 165
NlaIII CATG 1 cut(s) 66
NlaIV GGNNCC 1 cut(s) 27
NmuCI GTSAC 1 cut(s) 190
PcsI WCGNNNNNNNCGW 1 cut(s) 131
PkrI GCNGC 2 cut(s) 13, 178
Ple19I CGATCG 1 cut(s) 88
PshAI GACNNNNGTC 1 cut(s) 24
PspN4I GGNNCC 1 cut(s) 27
PspPI GGNCC 1 cut(s) 26
PvuI CGATCG 1 cut(s) 88
SatI GCNGC 2 cut(s) 12, 177
Sau3AI GATC 5 cut(s) 43, 85, 96, 109, 165
Sau96I GGNCC 1 cut(s) 26
SetI ASST 2 cut(s) 34, 226
SfaNI GCATC 1 cut(s) 163
SgeI CNNG 9 cut(s) 34, 41, 59, 75, 95, 101, 125, 193, 200
SinI GGWCC 1 cut(s) 26
SsiI CCGC 1 cut(s) 11
TaaI ACNGT 1 cut(s) 214
TaqI TCGA 1 cut(s) 42
TauI GCSGC 1 cut(s) 14
TscAI CASTG 1 cut(s) 217
TseFI GTSAC 1 cut(s) 190
TseI GCWGC 1 cut(s) 176
Tsp45I GTSAC 1 cut(s) 190
TspRI CASTG 1 cut(s) 217
VpaK11BI GGWCC 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.