Rh6CG013700
HSP70 Family

Belongs to the heat shock protein 70 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0001841
Physical Location & Seq
Forward (+)
1525442 .. 1533531
8090 bp
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UTR
Exon/CDS
Intron
Rh6CG013700.1

Sequence Viewer

Length: 342 bp
ATGGCAGGTGGTGGAGAGGATCATGCAATAGGGATTGACTTGGGGACAACCTATTCATGCGTGGCAGTGTGGCAGCACGATCGAGTTGAGATAATAGTGAACGATCAAGGCAACAGAACTACTCCATCTTATGTTGCCTTCACTGATACTGAGCAATTGGTAGGAGATGCAGCACTTAACCAGATCATCAAAAACCCTACCAACTCGGTCTTTGGATTGAGAATTCGGATTCCGAAGATGTATGGTCAGAAAGGTCCTGCTAATAAGTGCCTCAAGAAGCCAATTACACTTCTCGGGCTATTACAAGTGTTTTTCACTACTGCATCGATACAATTTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169
Pfam Domains
Protein Families
HSP70

Protein Analysis

113

Amino Acids

12.32

Weight (kDa)

7.79

Isoelectric Point (pI)

25.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 9 - 77 3.3e-26 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 27
AcsI RAATTY 1 cut(s) 222
AlwI GGATC 1 cut(s) 27
Ama87I CYCGRG 1 cut(s) 293
ApeKI GCWGC 2 cut(s) 73, 170
ApoI RAATTY 1 cut(s) 222
AspS9I GGNCC 1 cut(s) 254
AvaI CYCGRG 1 cut(s) 293
AvaII GGWCC 1 cut(s) 254
BbvI GCAGC 2 cut(s) 85, 182
BccI CCATC 1 cut(s) 133
BcgI CGANNNNNNTGC 2 cut(s) 62, 96
BisI GCNGC 2 cut(s) 74, 171
BlsI GCNGC 2 cut(s) 75, 172
Bme18I GGWCC 1 cut(s) 254
BmeT110I CYCGRG 1 cut(s) 293
BmgT120I GGNCC 1 cut(s) 254
BmsI GCATC 2 cut(s) 157, 332
BpuEI CTTGAG 1 cut(s) 257
Bsa29I ATCGAT 1 cut(s) 326
BseCI ATCGAT 1 cut(s) 326
BseMII CTCAG 1 cut(s) 141
BseXI GCAGC 2 cut(s) 85, 182
Bsh1285I CGRYCG 1 cut(s) 82
BshVI ATCGAT 1 cut(s) 326
BsiEI CGRYCG 1 cut(s) 82
BsiHKCI CYCGRG 1 cut(s) 293
BslFI GGGAC 1 cut(s) 58
BsmFI GGGAC 1 cut(s) 58
BsoBI CYCGRG 1 cut(s) 293
Bsp143I GATC 4 cut(s) 19, 79, 103, 183
BspCNI CTCAG 1 cut(s) 142
BspDI ATCGAT 1 cut(s) 326
BspPI GGATC 1 cut(s) 27
BssMI GATC 4 cut(s) 19, 79, 103, 183
BstDEI CTNAG 1 cut(s) 150
BstKTI GATC 4 cut(s) 22, 82, 106, 186
BstMBI GATC 4 cut(s) 19, 79, 103, 183
BstMCI CGRYCG 1 cut(s) 82
BstV1I GCAGC 2 cut(s) 85, 182
Bsu15I ATCGAT 1 cut(s) 326
BsuTUI ATCGAT 1 cut(s) 326
BtsI GCAGTG 1 cut(s) 72
BtsIMutI CAGTG 2 cut(s) 72, 141
Cfr13I GGNCC 1 cut(s) 254
ClaI ATCGAT 1 cut(s) 326
CviAII CATG 2 cut(s) 23, 57
CviJI RGCY 2 cut(s) 280, 298
CviKI_1 RGCY 2 cut(s) 280, 298
DdeI CTNAG 1 cut(s) 150
DpnI GATC 4 cut(s) 21, 81, 105, 185
DpnII GATC 4 cut(s) 19, 79, 103, 183
Eco47I GGWCC 1 cut(s) 254
Eco88I CYCGRG 1 cut(s) 293
EcoO109I RGGNCCY 1 cut(s) 254
EcoRI GAATTC 1 cut(s) 222
FaeI CATG 2 cut(s) 26, 60
FaiI YATR 4 cut(s) 24, 58, 132, 243
FaqI GGGAC 1 cut(s) 58
FatI CATG 2 cut(s) 22, 56
Fnu4HI GCNGC 2 cut(s) 74, 171
Fsp4HI GCNGC 2 cut(s) 74, 171
GluI GCNGC 2 cut(s) 74, 171
Hin1II CATG 2 cut(s) 26, 60
HinfI GANTC 1 cut(s) 229
Hpy166II GTNNAC 1 cut(s) 100
Hpy188I TCNGA 3 cut(s) 228, 234, 249
Hpy188III TCNNGA 1 cut(s) 274
Hpy8I GTNNAC 1 cut(s) 100
HpyAV CCTTC 1 cut(s) 148
HpyCH4V TGCA 3 cut(s) 26, 170, 323
HpyF3I CTNAG 1 cut(s) 150
Hsp92II CATG 2 cut(s) 26, 60
Kzo9I GATC 4 cut(s) 19, 79, 103, 183
LpnPI CCDG 2 cut(s) 194, 270
Lsp1109I GCAGC 2 cut(s) 85, 182
LweI GCATC 2 cut(s) 157, 332
MalI GATC 4 cut(s) 21, 81, 105, 185
MboI GATC 4 cut(s) 19, 79, 103, 183
MboII GAAGA 1 cut(s) 247
MfeI CAATTG 1 cut(s) 155
MluCI AATT 4 cut(s) 155, 222, 282, 332
MnlI CCTC 2 cut(s) 10, 281
MseI TTAA 1 cut(s) 177
MunI CAATTG 1 cut(s) 155
NdeII GATC 4 cut(s) 19, 79, 103, 183
NlaIII CATG 2 cut(s) 26, 60
PfeI GAWTC 1 cut(s) 229
PkrI GCNGC 2 cut(s) 75, 172
Ple19I CGATCG 1 cut(s) 82
PpuMI RGGWCCY 1 cut(s) 254
Psp5II RGGWCCY 1 cut(s) 254
PspPI GGNCC 1 cut(s) 254
PspPPI RGGWCCY 1 cut(s) 254
PvuI CGATCG 1 cut(s) 82
SaqAI TTAA 1 cut(s) 177
SatI GCNGC 2 cut(s) 74, 171
Sau3AI GATC 4 cut(s) 19, 79, 103, 183
Sau96I GGNCC 1 cut(s) 254
SetI ASST 3 cut(s) 10, 53, 256
SfaNI GCATC 2 cut(s) 157, 332
SinI GGWCC 1 cut(s) 254
SmlI CTYRAG 1 cut(s) 272
SmoI CTYRAG 1 cut(s) 272
Sse9I AATT 4 cut(s) 155, 222, 282, 332
TaqI TCGA 2 cut(s) 82, 326
TaqII GACCGA 1 cut(s) 196
TasI AATT 4 cut(s) 155, 222, 282, 332
TfiI GAWTC 1 cut(s) 229
Tru1I TTAA 1 cut(s) 177
Tru9I TTAA 1 cut(s) 177
TscAI CASTG 2 cut(s) 72, 148
TseI GCWGC 2 cut(s) 73, 170
TspDTI ATGAA 1 cut(s) 45
TspRI CASTG 2 cut(s) 72, 148
VpaK11BI GGWCC 1 cut(s) 254
XapI RAATTY 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.