Rh1DG333100
HSP70 Family

Belongs to the heat shock protein 70 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0001841
Physical Location & Seq
Forward (+)
55895765 .. 55907017
11253 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG333100.1

Sequence Viewer

Length: 267 bp
ATGGGCGGAGGAGGAGAGGGTCATGCAATAGGGATTGACTTAGGGACAACCAACTCGTGCGTGGCGGTGTGGGAGAACGATCATGTTGAAGTGATAGTGAATGATCAGGGCAGTAAGACCACTCCCTCTTGTGTTGCTTTCACTGATACACAGACCTTGGTAGGTGATGCAGCACTTGACCAGATTATCCGAAACCCCGCCAACACCATTTTTGGTTCACCAGTTGTGATCCAATCGTCATGGCCCACGACATTCTCTAATGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169
Pfam Domains
Protein Families
HSP70

Protein Analysis

88

Amino Acids

9.16

Weight (kDa)

4.17

Isoelectric Point (pI)

31.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 9 - 72 2.1e-25 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 6, 65, 198
AclWI GGATC 1 cut(s) 223
AgsI TTSAA 1 cut(s) 89
AlwI GGATC 1 cut(s) 223
AoxI GGCC 1 cut(s) 242
ApeKI GCWGC 1 cut(s) 170
AspS9I GGNCC 1 cut(s) 243
AsuHPI GGTGA 2 cut(s) 176, 210
BauI CACGAG 1 cut(s) 55
BbvI GCAGC 1 cut(s) 182
BclI TGATCA 1 cut(s) 103
BisI GCNGC 1 cut(s) 171
BlsI GCNGC 1 cut(s) 172
BmgT120I GGNCC 1 cut(s) 243
BmsI GCATC 1 cut(s) 157
BsaJI CCNNGG 1 cut(s) 156
Bse1I ACTGG 1 cut(s) 221
BseDI CCNNGG 1 cut(s) 156
BseNI ACTGG 1 cut(s) 221
BseRI GAGGAG 2 cut(s) 24, 27
BseXI GCAGC 1 cut(s) 182
BshFI GGCC 1 cut(s) 244
BslFI GGGAC 1 cut(s) 58
BsmFI GGGAC 1 cut(s) 58
BsnI GGCC 1 cut(s) 244
Bsp143I GATC 3 cut(s) 79, 103, 228
BspACI CCGC 3 cut(s) 6, 65, 198
BspANI GGCC 1 cut(s) 244
BspPI GGATC 1 cut(s) 223
BsrI ACTGG 1 cut(s) 221
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 3 cut(s) 79, 103, 228
BssSI CACGAG 1 cut(s) 55
BssT1I CCWWGG 1 cut(s) 156
Bst2BI CACGAG 1 cut(s) 55
BstDEI CTNAG 1 cut(s) 40
BstKTI GATC 3 cut(s) 82, 106, 231
BstMBI GATC 3 cut(s) 79, 103, 228
BstV1I GCAGC 1 cut(s) 182
BsuRI GGCC 1 cut(s) 244
BtsIMutI CAGTG 1 cut(s) 141
Cfr13I GGNCC 1 cut(s) 243
CviAII CATG 3 cut(s) 23, 83, 240
CviJI RGCY 1 cut(s) 244
CviKI_1 RGCY 1 cut(s) 244
DdeI CTNAG 1 cut(s) 40
DpnI GATC 3 cut(s) 81, 105, 230
DpnII GATC 3 cut(s) 79, 103, 228
EciI GGCGGA 1 cut(s) 21
Eco130I CCWWGG 1 cut(s) 156
EcoT14I CCWWGG 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 3 cut(s) 26, 86, 243
FaiI YATR 3 cut(s) 24, 84, 241
FaqI GGGAC 1 cut(s) 58
FatI CATG 3 cut(s) 22, 82, 239
FauI CCCGC 1 cut(s) 205
FbaI TGATCA 1 cut(s) 103
Fnu4HI GCNGC 1 cut(s) 171
Fsp4HI GCNGC 1 cut(s) 171
GluI GCNGC 1 cut(s) 171
HaeIII GGCC 1 cut(s) 244
Hin1II CATG 3 cut(s) 26, 86, 243
HphI GGTGA 2 cut(s) 176, 210
Hpy166II GTNNAC 1 cut(s) 218
Hpy188I TCNGA 1 cut(s) 191
Hpy8I GTNNAC 1 cut(s) 218
HpyCH4V TGCA 2 cut(s) 26, 170
HpyF3I CTNAG 1 cut(s) 40
Hsp92II CATG 3 cut(s) 26, 86, 243
Ksp22I TGATCA 1 cut(s) 103
Kzo9I GATC 3 cut(s) 79, 103, 228
LpnPI CCDG 3 cut(s) 92, 194, 234
Lsp1109I GCAGC 1 cut(s) 182
LweI GCATC 1 cut(s) 157
MalI GATC 3 cut(s) 81, 105, 230
MboI GATC 3 cut(s) 79, 103, 228
MnlI CCTC 3 cut(s) 5, 10, 136
NdeII GATC 3 cut(s) 79, 103, 228
NlaIII CATG 3 cut(s) 26, 86, 243
PkrI GCNGC 1 cut(s) 172
PspPI GGNCC 1 cut(s) 243
SatI GCNGC 1 cut(s) 171
Sau3AI GATC 3 cut(s) 79, 103, 228
Sau96I GGNCC 1 cut(s) 243
SetI ASST 2 cut(s) 158, 166
SfaNI GCATC 1 cut(s) 157
SsiI CCGC 3 cut(s) 6, 65, 198
StyI CCWWGG 1 cut(s) 156
TscAI CASTG 1 cut(s) 148
TseI GCWGC 1 cut(s) 170
TspRI CASTG 1 cut(s) 148
XcmI CCANNNNNNNNNTGG 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.