RchiOBHm_Chr7g0242871
HSP70 Family

Heat shock cognate 70 kDa

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001841
Physical Location & Seq
Reverse (-)
69203035 .. 69204032
998 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21765

Sequence Viewer

Length: 411 bp
ATGTCCAGAAAAGAAAAGGGTCATGCAATAGGGATTGACTTGGGGACAACTTACTCGTGCGTGGCGGTTTGGCAGCACGAACATGTAGAAATCATAGTGAACGATCAGGGAAACAAGACTACTCCATCTTATGTTGCCTTCACTGATACTGAGAAACTGATTGGCGATTCAGCGTTTAACCAGATCATCAAGAATCCCACCAACTCCATATTTGATGCAAAGCGCTTGATTGGTAGGAGATTCAGTGATGCCTCTGTTCAAAATGATAGGAAGCTCTGGCCATTCAAGGTCATTGAAGGTGACAATGACAAGCCAATGATCATGGTTACACACCAGGGCAAAGAGAAACAATTTGCTGCTGAAGAAATCTCATCTATGGTTCTCACAAAGATGCGGGAGATAGCTAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169
Pfam Domains
Protein Families
HSP70

Protein Analysis

136

Amino Acids

15.34

Weight (kDa)

6.91

Isoelectric Point (pI)

33.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 9 - 135 1e-48 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 65, 394
AcoI YGGCCR 1 cut(s) 278
AcuI CTGAAG 1 cut(s) 381
AfeI AGCGCT 1 cut(s) 224
AflIII ACRYGT 1 cut(s) 82
AgsI TTSAA 3 cut(s) 260, 286, 296
AjnI CCWGG 1 cut(s) 333
AluBI AGCT 3 cut(s) 274, 404, 408
AluI AGCT 3 cut(s) 274, 404, 408
Aor51HI AGCGCT 1 cut(s) 224
AoxI GGCC 1 cut(s) 278
ApeKI GCWGC 2 cut(s) 73, 356
AspLEI GCGC 1 cut(s) 225
AsuHPI GGTGA 1 cut(s) 311
AsuNHI GCTAGC 1 cut(s) 404
BalI TGGCCA 1 cut(s) 280
BauI CACGAG 1 cut(s) 55
BbvI GCAGC 2 cut(s) 85, 343
BccI CCATC 1 cut(s) 133
BciT130I CCWGG 1 cut(s) 335
BclI TGATCA 1 cut(s) 318
BfaI CTAG 1 cut(s) 405
BfoI RGCGCY 1 cut(s) 226
BisI GCNGC 2 cut(s) 74, 357
BlsI GCNGC 2 cut(s) 75, 358
Bme1390I CCNGG 1 cut(s) 335
BmrFI CCNGG 1 cut(s) 335
BmsI GCATC 3 cut(s) 205, 238, 381
BmtI GCTAGC 1 cut(s) 408
BsaJI CCNNGG 1 cut(s) 334
BsaXI ACNNNNNCTCC 2 cut(s) 229, 259
BseBI CCWGG 1 cut(s) 335
BseDI CCNNGG 1 cut(s) 334
BseMII CTCAG 1 cut(s) 141
BseXI GCAGC 2 cut(s) 85, 343
BshFI GGCC 1 cut(s) 280
BslFI GGGAC 1 cut(s) 58
BsmFI GGGAC 1 cut(s) 58
BsnI GGCC 1 cut(s) 280
Bsp143I GATC 3 cut(s) 103, 183, 318
BspACI CCGC 2 cut(s) 65, 394
BspANI GGCC 1 cut(s) 280
BspCNI CTCAG 1 cut(s) 142
BspOI GCTAGC 1 cut(s) 408
BssECI CCNNGG 1 cut(s) 334
BssMI GATC 3 cut(s) 103, 183, 318
BssSI CACGAG 1 cut(s) 55
Bst2BI CACGAG 1 cut(s) 55
Bst2UI CCWGG 1 cut(s) 335
BstC8I GCNNGC 1 cut(s) 406
BstDEI CTNAG 1 cut(s) 150
BstH2I RGCGCY 1 cut(s) 226
BstHHI GCGC 1 cut(s) 225
BstKTI GATC 3 cut(s) 106, 186, 321
BstMBI GATC 3 cut(s) 103, 183, 318
BstNI CCWGG 1 cut(s) 335
BstNSI RCATGY 1 cut(s) 86
BstSCI CCNGG 1 cut(s) 333
BstV1I GCAGC 2 cut(s) 85, 343
BsuRI GGCC 1 cut(s) 280
BtsIMutI CAGTG 2 cut(s) 141, 250
Cac8I GCNNGC 1 cut(s) 406
CfoI GCGC 1 cut(s) 225
CviAII CATG 3 cut(s) 23, 83, 322
CviJI RGCY 5 cut(s) 274, 280, 313, 404, 408
CviKI_1 RGCY 5 cut(s) 274, 280, 313, 404, 408
DdeI CTNAG 1 cut(s) 150
DpnI GATC 3 cut(s) 105, 185, 320
DpnII GATC 3 cut(s) 103, 183, 318
EaeI YGGCCR 1 cut(s) 278
Eco47III AGCGCT 1 cut(s) 224
Eco57I CTGAAG 1 cut(s) 381
EcoRII CCWGG 1 cut(s) 333
FaeI CATG 3 cut(s) 26, 86, 325
FaiI YATR 7 cut(s) 24, 84, 95, 132, 209, 323, 377
FaqI GGGAC 1 cut(s) 58
FatI CATG 3 cut(s) 22, 82, 321
FauI CCCGC 1 cut(s) 387
FbaI TGATCA 1 cut(s) 318
Fnu4HI GCNGC 2 cut(s) 74, 357
Fsp4HI GCNGC 2 cut(s) 74, 357
FspBI CTAG 1 cut(s) 405
GlaI GCGC 1 cut(s) 224
GluI GCNGC 2 cut(s) 74, 357
HaeII RGCGCY 1 cut(s) 226
HaeIII GGCC 1 cut(s) 280
HhaI GCGC 1 cut(s) 225
Hin1II CATG 3 cut(s) 26, 86, 325
Hin6I GCGC 1 cut(s) 223
HinP1I GCGC 1 cut(s) 223
HinfI GANTC 3 cut(s) 167, 193, 240
HphI GGTGA 1 cut(s) 311
Hpy166II GTNNAC 1 cut(s) 100
Hpy188III TCNNGA 2 cut(s) 6, 190
Hpy8I GTNNAC 1 cut(s) 100
HpyAV CCTTC 2 cut(s) 148, 290
HpyCH4V TGCA 2 cut(s) 26, 218
HpyF3I CTNAG 1 cut(s) 150
Hsp92II CATG 3 cut(s) 26, 86, 325
HspAI GCGC 1 cut(s) 223
Ksp22I TGATCA 1 cut(s) 318
Kzo9I GATC 3 cut(s) 103, 183, 318
LpnPI CCDG 6 cut(s) 19, 92, 194, 262, 320, 347
Lsp1109I GCAGC 2 cut(s) 85, 343
LweI GCATC 3 cut(s) 205, 238, 381
MaeI CTAG 1 cut(s) 405
MaeIII GTNAC 2 cut(s) 299, 325
MalI GATC 3 cut(s) 105, 185, 320
MboI GATC 3 cut(s) 103, 183, 318
MboII GAAGA 1 cut(s) 374
MlsI TGGCCA 1 cut(s) 280
MluCI AATT 1 cut(s) 350
MluNI TGGCCA 1 cut(s) 280
MnlI CCTC 1 cut(s) 262
Mox20I TGGCCA 1 cut(s) 280
MscI TGGCCA 1 cut(s) 280
MseI TTAA 1 cut(s) 177
MslI CAYNNNNRTG 2 cut(s) 81, 389
Msp20I TGGCCA 1 cut(s) 280
MspR9I CCNGG 1 cut(s) 335
MvaI CCWGG 1 cut(s) 335
NdeII GATC 3 cut(s) 103, 183, 318
NheI GCTAGC 1 cut(s) 404
NlaIII CATG 3 cut(s) 26, 86, 325
NmuCI GTSAC 1 cut(s) 299
NspI RCATGY 1 cut(s) 86
PciI ACATGT 1 cut(s) 82
PfeI GAWTC 3 cut(s) 167, 193, 240
PkrI GCNGC 2 cut(s) 75, 358
PscI ACATGT 1 cut(s) 82
Psp6I CCWGG 1 cut(s) 333
PspGI CCWGG 1 cut(s) 333
RseI CAYNNNNRTG 2 cut(s) 81, 389
SaqAI TTAA 1 cut(s) 177
SatI GCNGC 2 cut(s) 74, 357
Sau3AI GATC 3 cut(s) 103, 183, 318
ScrFI CCNGG 1 cut(s) 335
SetI ASST 5 cut(s) 276, 291, 301, 406, 410
SfaNI GCATC 3 cut(s) 205, 238, 381
SmiMI CAYNNNNRTG 2 cut(s) 81, 389
Sse9I AATT 1 cut(s) 350
SsiI CCGC 2 cut(s) 65, 394
SspMI CTAG 1 cut(s) 405
StyD4I CCNGG 1 cut(s) 333
TasI AATT 1 cut(s) 350
TfiI GAWTC 3 cut(s) 167, 193, 240
Tru1I TTAA 1 cut(s) 177
Tru9I TTAA 1 cut(s) 177
TscAI CASTG 2 cut(s) 148, 250
TseFI GTSAC 1 cut(s) 299
TseI GCWGC 2 cut(s) 73, 356
Tsp45I GTSAC 1 cut(s) 299
TspRI CASTG 2 cut(s) 148, 250
XceI RCATGY 1 cut(s) 86
XspI CTAG 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.