Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000785.1

Orthogroup ID

OG0001841

Physical Location & Seq

Genomic Coordinates Reverse (-)

189689 .. 190158

Gene Structure 470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000785.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

atggctatggctgcaaaaggtgagggtccggccatcggtatcgatcttggagcaacttattcatgcgttggtgtttggcaacacggtcgtgttgagatcatcgccaatgatcaaggcaatagaacaacaccgtcatatgtagcttttaccgacaatggacgtttgattggtgatgccgccaagaaccaagtctccatgaaccccattaacaatatttttgatgcaaagcgcttgattggtaggagtttcagtgatgcctccataaagagtgacatgaagttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009620 GO:0009628 GO:0009941 GO:0009987 GO:0010029 GO:0010035 GO:0010038 GO:0010118 GO:0010187 GO:0012505 GO:0016020 GO:0016363 GO:0019899 GO:0022626 GO:0030054 GO:0030312 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0034399 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046686 GO:0048046 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0050832 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0070013 GO:0071944 GO:0080167 GO:0090332 GO:0098542 GO:0098588 GO:0098805 GO:1900140 GO:1990904 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169

Pfam Domains

Protein Families

HSP70

Protein Analysis

94

Amino Acids

10.06

Weight (kDa)

7.89

Isoelectric Point (pI)

24.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001841)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g26910 FvH4_2g01780 FvH4_2g01930 FvH4_2g04820 FvH4_2g04841 FvH4_3g29971
malus_domestica	MD01G1129300.v1.1 MD01G1129600.v1.1
pyrus_communis	pycom04g11280 pycom07g18490 pycom12g13460 pycom14g02390
rosa_chinensis	RchiOBHm_Chr6g0244981 RchiOBHm_Chr7g0242871
rosa_laevigata	RLG00000025347
rosa_multiflora	Rmu_sc0000785.1_g000034 Rmu_sc0033687.1_g000001 Rmu_sc0036726.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255620 Rroxscaffold_6G00423680 Rroxscaffold_6G00424170
rosa_rugosa	Rorug07G0107600
rosa_samantha	Rh1BG301100 Rh1DG331900 Rh1DG332900 Rh1DG333000 Rh1DG333100 Rh1DG333400 Rh3AG068100 Rh3BG070400 Rh3BG070600 Rh3BG070700 Rh3CG068700 Rh3CG068900 Rh3CG069000 Rh3DG070500 Rh6BG014700 Rh6BG017000 Rh6BG022500 Rh6CG013700 Rh6CG021100 Rh6CG117700 Rh7AG473000 Rh7DG192400 Rh7DG193800 Rh7DG196100 Rh7DG196300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	177
AcoI	YGGCCR	1 cut(s)	30
AfeI	AGCGCT	1 cut(s)	230
AfiI	CCNNNNNNNGG	1 cut(s)	35
AleI	CACNNNNGTG	1 cut(s)	87
AloI	GAACNNNNNNTCC	2 cut(s)	176, 208
AluBI	AGCT	1 cut(s)	143
AluI	AGCT	1 cut(s)	143
Alw26I	GTCTC	1 cut(s)	196
Aor51HI	AGCGCT	1 cut(s)	230
AoxI	GGCC	1 cut(s)	30
ApeKI	GCWGC	1 cut(s)	11
AspLEI	GCGC	1 cut(s)	231
AspS9I	GGNCC	1 cut(s)	26
AsuHPI	GGTGA	2 cut(s)	32, 182
AvaII	GGWCC	1 cut(s)	26
BccI	CCATC	1 cut(s)	41
BcgI	CGANNNNNNTGC	2 cut(s)	68, 102
BclI	TGATCA	1 cut(s)	109
BcoDI	GTCTC	1 cut(s)	196
BfoI	RGCGCY	1 cut(s)	232
BisI	GCNGC	2 cut(s)	12, 177
BlsI	GCNGC	2 cut(s)	13, 178
Bme18I	GGWCC	1 cut(s)	26
BmgT120I	GGNCC	1 cut(s)	26
BmiI	GGNNCC	1 cut(s)	27
BmsI	GCATC	3 cut(s)	163, 211, 244
Bsa29I	ATCGAT	1 cut(s)	42
BsaXI	ACNNNNNCTCC	4 cut(s)	176, 206, 235, 265
Bsc4I	CCNNNNNNNGG	1 cut(s)	35
BseCI	ATCGAT	1 cut(s)	42
BseLI	CCNNNNNNNGG	1 cut(s)	35
Bsh1285I	CGRYCG	1 cut(s)	88
BshFI	GGCC	1 cut(s)	32
BshVI	ATCGAT	1 cut(s)	42
BsiEI	CGRYCG	1 cut(s)	88
BsiSI	CCGG	1 cut(s)	29
BslI	CCNNNNNNNGG	1 cut(s)	35
BsmAI	GTCTC	1 cut(s)	196
BsnI	GGCC	1 cut(s)	32
Bsp143I	GATC	3 cut(s)	43, 96, 109
BspACI	CCGC	1 cut(s)	177
BspANI	GGCC	1 cut(s)	32
BspDI	ATCGAT	1 cut(s)	42
BspLI	GGNNCC	1 cut(s)	27
BssMI	GATC	3 cut(s)	43, 96, 109
Bst4CI	ACNGT	2 cut(s)	86, 132
BstH2I	RGCGCY	1 cut(s)	232
BstHHI	GCGC	1 cut(s)	231
BstKTI	GATC	3 cut(s)	46, 99, 112
BstMAI	GTCTC	1 cut(s)	196
BstMBI	GATC	3 cut(s)	43, 96, 109
BstMCI	CGRYCG	1 cut(s)	88
BstMWI	GCNNNNNNNGC	1 cut(s)	11
Bsu15I	ATCGAT	1 cut(s)	42
BsuRI	GGCC	1 cut(s)	32
BsuTUI	ATCGAT	1 cut(s)	42
BtgZI	GCGATG	1 cut(s)	85
BtsIMutI	CAGTG	1 cut(s)	256
CfoI	GCGC	1 cut(s)	231
Cfr13I	GGNCC	1 cut(s)	26
ClaI	ATCGAT	1 cut(s)	42
CviAII	CATG	3 cut(s)	63, 196, 274
CviJI	RGCY	4 cut(s)	5, 11, 32, 143
CviKI_1	RGCY	4 cut(s)	5, 11, 32, 143
DpnI	GATC	3 cut(s)	45, 98, 111
DpnII	GATC	3 cut(s)	43, 96, 109
EaeI	YGGCCR	1 cut(s)	30
Eco47I	GGWCC	1 cut(s)	26
Eco47III	AGCGCT	1 cut(s)	230
FaeI	CATG	3 cut(s)	66, 199, 277
FaiI	YATR	7 cut(s)	8, 64, 136, 138, 197, 263, 275
FatI	CATG	3 cut(s)	62, 195, 273
FauNDI	CATATG	1 cut(s)	136
FbaI	TGATCA	1 cut(s)	109
Fnu4HI	GCNGC	2 cut(s)	12, 177
Fsp4HI	GCNGC	2 cut(s)	12, 177
GlaI	GCGC	1 cut(s)	230
GluI	GCNGC	2 cut(s)	12, 177
HaeII	RGCGCY	1 cut(s)	232
HaeIII	GGCC	1 cut(s)	32
HapII	CCGG	1 cut(s)	29
HhaI	GCGC	1 cut(s)	231
Hin1II	CATG	3 cut(s)	66, 199, 277
Hin6I	GCGC	1 cut(s)	229
HinP1I	GCGC	1 cut(s)	229
HpaII	CCGG	1 cut(s)	29
HphI	GGTGA	2 cut(s)	32, 182
HpyCH4III	ACNGT	2 cut(s)	86, 132
HpyCH4IV	ACGT	1 cut(s)	160
HpyCH4V	TGCA	2 cut(s)	14, 224
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpySE526I	ACGT	1 cut(s)	160
Hsp92II	CATG	3 cut(s)	66, 199, 277
HspAI	GCGC	1 cut(s)	229
Ksp22I	TGATCA	1 cut(s)	109
Kzo9I	GATC	3 cut(s)	43, 96, 109
LmnI	GCTCC	1 cut(s)	50
LpnPI	CCDG	1 cut(s)	42
LweI	GCATC	3 cut(s)	163, 211, 244
MaeII	ACGT	1 cut(s)	160
MaeIII	GTNAC	1 cut(s)	269
MalI	GATC	3 cut(s)	45, 98, 111
MboI	GATC	3 cut(s)	43, 96, 109
MnlI	CCTC	2 cut(s)	16, 268
MseI	TTAA	1 cut(s)	207
MslI	CAYNNNNRTG	1 cut(s)	87
MspI	CCGG	1 cut(s)	29
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeI	CATATG	1 cut(s)	136
NdeII	GATC	3 cut(s)	43, 96, 109
NlaIII	CATG	3 cut(s)	66, 199, 277
NlaIV	GGNNCC	1 cut(s)	27
NmuCI	GTSAC	1 cut(s)	269
OliI	CACNNNNGTG	1 cut(s)	87
PkrI	GCNGC	2 cut(s)	13, 178
PspN4I	GGNNCC	1 cut(s)	27
PspPI	GGNCC	1 cut(s)	26
RseI	CAYNNNNRTG	1 cut(s)	87
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	2 cut(s)	12, 177
Sau3AI	GATC	3 cut(s)	43, 96, 109
Sau96I	GGNCC	1 cut(s)	26
SetI	ASST	3 cut(s)	22, 145, 163
SfaNI	GCATC	3 cut(s)	163, 211, 244
SinI	GGWCC	1 cut(s)	26
SmiMI	CAYNNNNRTG	1 cut(s)	87
SsiI	CCGC	1 cut(s)	177
SspI	AATATT	1 cut(s)	214
TaaI	ACNGT	2 cut(s)	86, 132
TaiI	ACGT	1 cut(s)	163
TaqI	TCGA	1 cut(s)	42
TauI	GCSGC	1 cut(s)	179
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TscAI	CASTG	1 cut(s)	256
TseFI	GTSAC	1 cut(s)	269
TseI	GCWGC	1 cut(s)	11
Tsp45I	GTSAC	1 cut(s)	269
TspDTI	ATGAA	2 cut(s)	51, 212
TspRI	CASTG	1 cut(s)	256
VpaK11BI	GGWCC	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.