Rh1DG333000
HSP70 Family

Belongs to the heat shock protein 70 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0001841
Physical Location & Seq
Forward (+)
55870014 .. 55883832
13819 bp
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UTR
Exon/CDS
Intron
Rh1DG333000.1

Sequence Viewer

Length: 324 bp
ATGGGCGGAGGAGGAGAGGGTCATGCAATAGGGATTGACTTAGGGACAACCAACTCGTGCGTGGCGGTGTGGGAGAACGATCATGTTGAAGTAATAGTGAATGATCAGGGCAGTAAGACCACTCCCTCTTGTGTTGCTTTCACTGATACACAGACCTTGGTAGGTGATGCAGCACTTGACCAGATTATCCGAAACCCCGCCAACACTATTTTTGATTTTGGCTTCAAGGAAATAGCTTTCTGGGTCTATGTTTCTGCTTATGAAATTGCTCTGGTCTGGGCATTTACTGGTGTGAATTTGAGTTCTCAGCTTAAATTCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169
Pfam Domains
Protein Families
HSP70

Protein Analysis

107

Amino Acids

11.5

Weight (kDa)

4.38

Isoelectric Point (pI)

13.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 9 - 73 1.4e-25 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 6, 65, 198
AcsI RAATTY 2 cut(s) 295, 314
AgsI TTSAA 3 cut(s) 89, 226, 319
AluBI AGCT 2 cut(s) 236, 310
AluI AGCT 2 cut(s) 236, 310
ApeKI GCWGC 1 cut(s) 170
ApoI RAATTY 2 cut(s) 295, 314
AsuHPI GGTGA 1 cut(s) 176
BauI CACGAG 1 cut(s) 55
BbvI GCAGC 1 cut(s) 182
BclI TGATCA 1 cut(s) 103
BisI GCNGC 1 cut(s) 171
BlsI GCNGC 1 cut(s) 172
BmsI GCATC 1 cut(s) 157
BsaJI CCNNGG 1 cut(s) 156
Bse1I ACTGG 1 cut(s) 292
BseDI CCNNGG 1 cut(s) 156
BseMII CTCAG 1 cut(s) 320
BseNI ACTGG 1 cut(s) 292
BseRI GAGGAG 2 cut(s) 24, 27
BseXI GCAGC 1 cut(s) 182
BslFI GGGAC 1 cut(s) 58
BsmFI GGGAC 1 cut(s) 58
Bsp143I GATC 2 cut(s) 79, 103
BspACI CCGC 3 cut(s) 6, 65, 198
BspCNI CTCAG 1 cut(s) 319
BsrI ACTGG 1 cut(s) 292
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 2 cut(s) 79, 103
BssSI CACGAG 1 cut(s) 55
BssT1I CCWWGG 1 cut(s) 156
Bst2BI CACGAG 1 cut(s) 55
BstDEI CTNAG 2 cut(s) 40, 306
BstKTI GATC 2 cut(s) 82, 106
BstMBI GATC 2 cut(s) 79, 103
BstV1I GCAGC 1 cut(s) 182
BtsIMutI CAGTG 1 cut(s) 141
CviAII CATG 2 cut(s) 23, 83
CviJI RGCY 3 cut(s) 222, 236, 310
CviKI_1 RGCY 3 cut(s) 222, 236, 310
DdeI CTNAG 2 cut(s) 40, 306
DpnI GATC 2 cut(s) 81, 105
DpnII GATC 2 cut(s) 79, 103
EciI GGCGGA 1 cut(s) 21
Eco130I CCWWGG 1 cut(s) 156
EcoT14I CCWWGG 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 2 cut(s) 26, 86
FaiI YATR 4 cut(s) 24, 84, 249, 261
FaqI GGGAC 1 cut(s) 58
FatI CATG 2 cut(s) 22, 82
FauI CCCGC 1 cut(s) 205
FbaI TGATCA 1 cut(s) 103
Fnu4HI GCNGC 1 cut(s) 171
Fsp4HI GCNGC 1 cut(s) 171
GluI GCNGC 1 cut(s) 171
Hin1II CATG 2 cut(s) 26, 86
HphI GGTGA 1 cut(s) 176
Hpy188I TCNGA 1 cut(s) 191
HpyCH4V TGCA 2 cut(s) 26, 170
HpyF3I CTNAG 2 cut(s) 40, 306
Hsp92II CATG 2 cut(s) 26, 86
Ksp22I TGATCA 1 cut(s) 103
Kzo9I GATC 2 cut(s) 79, 103
LpnPI CCDG 6 cut(s) 92, 194, 226, 257, 262, 273
Lsp1109I GCAGC 1 cut(s) 182
LweI GCATC 1 cut(s) 157
MalI GATC 2 cut(s) 81, 105
MboI GATC 2 cut(s) 79, 103
MluCI AATT 3 cut(s) 264, 295, 314
MnlI CCTC 3 cut(s) 5, 10, 136
MseI TTAA 1 cut(s) 312
NdeII GATC 2 cut(s) 79, 103
NlaIII CATG 2 cut(s) 26, 86
PkrI GCNGC 1 cut(s) 172
SaqAI TTAA 1 cut(s) 312
SatI GCNGC 1 cut(s) 171
Sau3AI GATC 2 cut(s) 79, 103
SetI ASST 4 cut(s) 158, 166, 238, 312
SfaNI GCATC 1 cut(s) 157
Sse9I AATT 3 cut(s) 264, 295, 314
SsiI CCGC 3 cut(s) 6, 65, 198
StyI CCWWGG 1 cut(s) 156
TasI AATT 3 cut(s) 264, 295, 314
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TscAI CASTG 1 cut(s) 148
TseI GCWGC 1 cut(s) 170
TspDTI ATGAA 1 cut(s) 276
TspRI CASTG 1 cut(s) 148
XapI RAATTY 2 cut(s) 295, 314
XcmI CCANNNNNNNNNTGG 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.