Rroxscaffold_3G00255620
HSP70 Family

Heat shock cognate 70 kDa

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0001841
Physical Location & Seq
Reverse (-)
49907392 .. 49915371
7980 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00255620.1

Sequence Viewer

Length: 483 bp
ATGGCTACAAAATGTGAGGGTCCAACGATTGGTATCGACCTCGGAACAACTTACTCGTGTGTGGGAGTTTGGCAACACGGTCGTGTTGAGATTATAGCTAATGATCAGGGCAATAGAACAACACCCTCTTACGTTGCTTTTACGAACAGTGGGCGTTTAATTGGTGATGCAGCCAAGAATCAAGTCTCCAAGAACCCCATCAACACTGTATTTGTGCTTGTAAGCCTTTTTTCTACCGTGAACTGCTTCTACTATCAACTTCCTACCACAGTTGTGTTTTCTCTTAAAGGGACAATTTGCATATCTGGTTATGGGTACCATGCGCGATTGTTGGTTCCCGGAAAGAATTTGGACTTGGGTTGTTCGCTTCTCTTTCAAAGCTTGTCCGAAAGGGACGAGAATCCAACTCTTCAACCCTCAGACGAAGAAAAATCTTCTCAACCCCAATTCCTCTTCTCCTCTACAACAAATTCCTCTCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169
Pfam Domains
Protein Families
HSP70

Protein Analysis

160

Amino Acids

17.44

Weight (kDa)

6.7

Isoelectric Point (pI)

28.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 10 - 72 2.2e-26 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 315
AccB1I GGYRCC 1 cut(s) 315
AccB7I CCANNNNNTGG 1 cut(s) 29
AccII CGCG 1 cut(s) 325
AcsI RAATTY 2 cut(s) 346, 469
AfaI GTAC 1 cut(s) 317
AfiI CCNNNNNNNGG 1 cut(s) 29
AgsI TTSAA 2 cut(s) 377, 413
AjuI GAANNNNNNNTTGG 2 cut(s) 338, 370
AleI CACNNNNGTG 2 cut(s) 81, 272
AluBI AGCT 2 cut(s) 98, 381
AluI AGCT 2 cut(s) 98, 381
Alw26I GTCTC 1 cut(s) 190
ApeKI GCWGC 1 cut(s) 170
ApoI RAATTY 2 cut(s) 346, 469
Asp700I GAANNNNTTC 1 cut(s) 245
Asp718I GGTACC 1 cut(s) 315
AspLEI GCGC 1 cut(s) 325
AspS9I GGNCC 1 cut(s) 20
AsuC2I CCSGG 1 cut(s) 339
AsuHPI GGTGA 1 cut(s) 176
AvaII GGWCC 1 cut(s) 20
BanI GGYRCC 1 cut(s) 315
BauI CACGAG 1 cut(s) 55
BbvI GCAGC 1 cut(s) 182
BccI CCATC 1 cut(s) 206
BcgI CGANNNNNNTGC 2 cut(s) 62, 96
BclI TGATCA 1 cut(s) 103
BcnI CCSGG 1 cut(s) 339
BcoDI GTCTC 1 cut(s) 190
BisI GCNGC 1 cut(s) 171
BlsI GCNGC 1 cut(s) 172
Bme1390I CCNGG 1 cut(s) 339
Bme18I GGWCC 1 cut(s) 20
BmgT120I GGNCC 1 cut(s) 20
BmiI GGNNCC 3 cut(s) 21, 317, 336
BmrFI CCNGG 1 cut(s) 339
BmsI GCATC 1 cut(s) 157
BpuMI CCSGG 1 cut(s) 339
BsaBI GATNNNNATC 1 cut(s) 32
BsaJI CCNNGG 1 cut(s) 40
Bsc4I CCNNNNNNNGG 1 cut(s) 29
Bse8I GATNNNNATC 1 cut(s) 32
BseDI CCNNGG 1 cut(s) 40
BseJI GATNNNNATC 1 cut(s) 32
BseLI CCNNNNNNNGG 1 cut(s) 29
BseMII CTCAG 1 cut(s) 432
BseRI GAGGAG 1 cut(s) 448
BseXI GCAGC 1 cut(s) 182
Bsh1236I CGCG 1 cut(s) 325
Bsh1285I CGRYCG 1 cut(s) 82
BshNI GGYRCC 1 cut(s) 315
BsiEI CGRYCG 1 cut(s) 82
BsiSI CCGG 1 cut(s) 339
BslFI GGGAC 2 cut(s) 304, 407
BslI CCNNNNNNNGG 1 cut(s) 29
BsmAI GTCTC 1 cut(s) 190
BsmFI GGGAC 2 cut(s) 304, 407
Bsp143I GATC 1 cut(s) 103
BspCNI CTCAG 1 cut(s) 431
BspFNI CGCG 1 cut(s) 325
BspLI GGNNCC 3 cut(s) 21, 317, 336
BspT107I GGYRCC 1 cut(s) 315
BssECI CCNNGG 1 cut(s) 40
BssMI GATC 1 cut(s) 103
BssSI CACGAG 1 cut(s) 55
Bst2BI CACGAG 1 cut(s) 55
Bst4CI ACNGT 5 cut(s) 80, 149, 208, 238, 271
Bst6I CTCTTC 2 cut(s) 414, 458
BstDEI CTNAG 1 cut(s) 418
BstFNI CGCG 1 cut(s) 325
BstHHI GCGC 1 cut(s) 325
BstKTI GATC 1 cut(s) 106
BstMAI GTCTC 1 cut(s) 190
BstMBI GATC 1 cut(s) 103
BstMCI CGRYCG 1 cut(s) 82
BstSCI CCNGG 1 cut(s) 337
BstUI CGCG 1 cut(s) 325
BstV1I GCAGC 1 cut(s) 182
BtsIMutI CAGTG 2 cut(s) 154, 204
CfoI GCGC 1 cut(s) 325
Cfr13I GGNCC 1 cut(s) 20
Csp6I GTAC 1 cut(s) 316
CviAII CATG 1 cut(s) 320
CviJI RGCY 5 cut(s) 5, 98, 173, 225, 381
CviKI_1 RGCY 5 cut(s) 5, 98, 173, 225, 381
CviQI GTAC 1 cut(s) 316
DdeI CTNAG 1 cut(s) 418
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
Eam1104I CTCTTC 2 cut(s) 414, 458
EarI CTCTTC 2 cut(s) 414, 458
Eco47I GGWCC 1 cut(s) 20
FaeI CATG 1 cut(s) 323
FaiI YATR 4 cut(s) 95, 302, 312, 321
FaqI GGGAC 2 cut(s) 304, 407
FatI CATG 1 cut(s) 319
FbaI TGATCA 1 cut(s) 103
Fnu4HI GCNGC 1 cut(s) 171
Fsp4HI GCNGC 1 cut(s) 171
GlaI GCGC 1 cut(s) 324
GluI GCNGC 1 cut(s) 171
HapII CCGG 1 cut(s) 339
HhaI GCGC 1 cut(s) 325
Hin1II CATG 1 cut(s) 323
Hin6I GCGC 1 cut(s) 323
HinP1I GCGC 1 cut(s) 323
HindIII AAGCTT 1 cut(s) 379
HinfI GANTC 2 cut(s) 178, 400
HpaII CCGG 1 cut(s) 339
HphI GGTGA 1 cut(s) 176
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 3 cut(s) 44, 388, 421
Hpy8I GTNNAC 1 cut(s) 241
HpyCH4III ACNGT 5 cut(s) 80, 149, 208, 238, 271
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 2 cut(s) 170, 300
HpyF3I CTNAG 1 cut(s) 418
HpySE526I ACGT 1 cut(s) 132
Hsp92II CATG 1 cut(s) 323
HspAI GCGC 1 cut(s) 323
KpnI GGTACC 1 cut(s) 319
Ksp22I TGATCA 1 cut(s) 103
Kzo9I GATC 1 cut(s) 103
LpnPI CCDG 3 cut(s) 92, 291, 352
Lsp1109I GCAGC 1 cut(s) 182
LweI GCATC 1 cut(s) 157
MaeII ACGT 1 cut(s) 132
MalI GATC 1 cut(s) 105
MboI GATC 1 cut(s) 103
MboII GAAGA 4 cut(s) 401, 426, 437, 445
MluCI AATT 5 cut(s) 159, 294, 346, 446, 469
MmeI TCCRAC 2 cut(s) 47, 428
MnlI CCTC 6 cut(s) 10, 50, 136, 427, 461, 469
MroXI GAANNNNTTC 1 cut(s) 245
MseI TTAA 2 cut(s) 158, 285
MslI CAYNNNNRTG 2 cut(s) 81, 272
MspI CCGG 1 cut(s) 339
MspR9I CCNGG 1 cut(s) 339
MvnI CGCG 1 cut(s) 325
NciI CCSGG 1 cut(s) 339
NdeII GATC 1 cut(s) 103
NlaIII CATG 1 cut(s) 323
NlaIV GGNNCC 3 cut(s) 21, 317, 336
OliI CACNNNNGTG 2 cut(s) 81, 272
PdmI GAANNNNTTC 1 cut(s) 245
PfeI GAWTC 2 cut(s) 178, 400
PflMI CCANNNNNTGG 1 cut(s) 29
PfoI TCCNGGA 1 cut(s) 337
PkrI GCNGC 1 cut(s) 172
PspN4I GGNNCC 3 cut(s) 21, 317, 336
PspPI GGNCC 1 cut(s) 20
PsrI GAACNNNNNNTAC 2 cut(s) 233, 265
RsaI GTAC 1 cut(s) 317
RsaNI GTAC 1 cut(s) 316
RseI CAYNNNNRTG 2 cut(s) 81, 272
SaqAI TTAA 2 cut(s) 158, 285
SatI GCNGC 1 cut(s) 171
Sau3AI GATC 1 cut(s) 103
Sau96I GGNCC 1 cut(s) 20
ScrFI CCNGG 1 cut(s) 339
SetI ASST 4 cut(s) 42, 100, 135, 383
SfaNI GCATC 1 cut(s) 157
SinI GGWCC 1 cut(s) 20
SmiMI CAYNNNNRTG 2 cut(s) 81, 272
Sse9I AATT 5 cut(s) 159, 294, 346, 446, 469
StyD4I CCNGG 1 cut(s) 337
TaaI ACNGT 5 cut(s) 80, 149, 208, 238, 271
TaiI ACGT 1 cut(s) 135
TaqI TCGA 1 cut(s) 36
TasI AATT 5 cut(s) 159, 294, 346, 446, 469
TfiI GAWTC 2 cut(s) 178, 400
Tru1I TTAA 2 cut(s) 158, 285
Tru9I TTAA 2 cut(s) 158, 285
TscAI CASTG 2 cut(s) 154, 211
TseI GCWGC 1 cut(s) 170
TspRI CASTG 2 cut(s) 154, 211
Van91I CCANNNNNTGG 1 cut(s) 29
VpaK11BI GGWCC 1 cut(s) 20
XapI RAATTY 2 cut(s) 346, 469
XmnI GAANNNNTTC 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.