FvH4_2g01930
HSP70 Family

Heat shock cognate 70 kDa

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001841
Physical Location & Seq
Forward (+)
1645873 .. 1647973
2101 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g01930.t1

Sequence Viewer

Length: 330 bp
ATGGCATTATCAGCAAAAGGCGAGGCACCAACTACTTACTCGTGCGTTGGGGTTTGGCAACACAATCGTGTAGAGATCATAGCCAATGATCAAGGCAACAGAACAACACCGTCCTATGTTGCTTTCACTAATGAATGGCGATTGATCGGTGATGCTGCCAAGAACCAAGTCACCGCCAATCCAATCAACACTGTGAGTGGAGGCGGAGGGCCGGAGGCGAGTCGTCGCTATCGGGGAGGACCGGAGGAGGCCGGGAAGAAGGAGATTATGGTGGAGCCGTGGAGGACTGGAGGGGAGTGGAGGCGGAGCCGCAGAGGGGAAGAGGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169
Pfam Domains
Protein Families
HSP70

Protein Analysis

110

Amino Acids

11.93

Weight (kDa)

8.93

Isoelectric Point (pI)

45.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 11 - 66 2.7e-20 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 25
AciI CCGC 4 cut(s) 174, 204, 304, 310
AfiI CCNNNNNNNGG 1 cut(s) 316
AleI CACNNNNGTG 1 cut(s) 66
AoxI GGCC 2 cut(s) 209, 249
ApeKI GCWGC 1 cut(s) 155
AspS9I GGNCC 2 cut(s) 209, 239
AsuC2I CCSGG 1 cut(s) 253
AsuHPI GGTGA 2 cut(s) 161, 163
AvaII GGWCC 1 cut(s) 239
BanI GGYRCC 1 cut(s) 25
BauI CACGAG 1 cut(s) 40
BbvI GCAGC 1 cut(s) 142
BceAI ACGGC 1 cut(s) 262
BcgI CGANNNNNNTGC 2 cut(s) 47, 81
BclI TGATCA 1 cut(s) 88
BcnI CCSGG 1 cut(s) 253
BisI GCNGC 2 cut(s) 156, 310
BlsI GCNGC 2 cut(s) 157, 311
Bme1390I CCNGG 1 cut(s) 253
Bme18I GGWCC 1 cut(s) 239
BmgT120I GGNCC 2 cut(s) 209, 239
BmiI GGNNCC 3 cut(s) 27, 276, 308
BmrFI CCNGG 1 cut(s) 253
BmsI GCATC 1 cut(s) 142
BpmI CTGGAG 1 cut(s) 309
BpuMI CCSGG 1 cut(s) 253
BsaJI CCNNGG 1 cut(s) 278
BsaWI WCCGGW 1 cut(s) 241
Bsc4I CCNNNNNNNGG 1 cut(s) 316
Bse1I ACTGG 1 cut(s) 292
BseDI CCNNGG 1 cut(s) 278
BseLI CCNNNNNNNGG 1 cut(s) 316
BseNI ACTGG 1 cut(s) 292
BseRI GAGGAG 1 cut(s) 260
BseXI GCAGC 1 cut(s) 142
BshFI GGCC 2 cut(s) 211, 251
BshNI GGYRCC 1 cut(s) 25
BsiSI CCGG 3 cut(s) 212, 242, 252
BslI CCNNNNNNNGG 1 cut(s) 316
BsnI GGCC 2 cut(s) 211, 251
Bsp143I GATC 3 cut(s) 75, 88, 144
BspACI CCGC 4 cut(s) 174, 204, 304, 310
BspANI GGCC 2 cut(s) 211, 251
BspLI GGNNCC 3 cut(s) 27, 276, 308
BspT107I GGYRCC 1 cut(s) 25
BsrI ACTGG 1 cut(s) 292
BssECI CCNNGG 1 cut(s) 278
BssMI GATC 3 cut(s) 75, 88, 144
BssSI CACGAG 1 cut(s) 40
Bst2BI CACGAG 1 cut(s) 40
Bst4CI ACNGT 2 cut(s) 111, 193
Bst6I CTCTTC 1 cut(s) 315
BstDSI CCRYGG 1 cut(s) 278
BstKTI GATC 3 cut(s) 78, 91, 147
BstMBI GATC 3 cut(s) 75, 88, 144
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstSCI CCNGG 1 cut(s) 251
BstV1I GCAGC 1 cut(s) 142
BsuRI GGCC 2 cut(s) 211, 251
BtgI CCRYGG 1 cut(s) 278
BtsIMutI CAGTG 1 cut(s) 189
Cfr13I GGNCC 2 cut(s) 209, 239
CviJI RGCY 5 cut(s) 83, 211, 251, 277, 309
CviKI_1 RGCY 5 cut(s) 83, 211, 251, 277, 309
DpnI GATC 3 cut(s) 77, 90, 146
DpnII GATC 3 cut(s) 75, 88, 144
Eam1104I CTCTTC 1 cut(s) 315
EarI CTCTTC 1 cut(s) 315
EciI GGCGGA 2 cut(s) 219, 319
Eco47I GGWCC 1 cut(s) 239
FaiI YATR 3 cut(s) 80, 117, 269
FbaI TGATCA 1 cut(s) 88
Fnu4HI GCNGC 2 cut(s) 156, 310
Fsp4HI GCNGC 2 cut(s) 156, 310
GluI GCNGC 2 cut(s) 156, 310
GsuI CTGGAG 1 cut(s) 309
HaeIII GGCC 2 cut(s) 211, 251
HapII CCGG 3 cut(s) 212, 242, 252
HinfI GANTC 1 cut(s) 220
HpaII CCGG 3 cut(s) 212, 242, 252
HphI GGTGA 2 cut(s) 161, 163
Hpy99I CGWCG 1 cut(s) 228
HpyAV CCTTC 1 cut(s) 253
HpyCH4III ACNGT 2 cut(s) 111, 193
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
Ksp22I TGATCA 1 cut(s) 88
Kzo9I GATC 3 cut(s) 75, 88, 144
LmnI GCTCC 2 cut(s) 274, 306
LpnPI CCDG 4 cut(s) 225, 255, 265, 273
Lsp1109I GCAGC 1 cut(s) 142
LweI GCATC 1 cut(s) 142
MaeIII GTNAC 1 cut(s) 169
MalI GATC 3 cut(s) 77, 90, 146
MboI GATC 3 cut(s) 75, 88, 144
MboII GAAGA 1 cut(s) 268
MlyI GAGTC 1 cut(s) 229
MslI CAYNNNNRTG 1 cut(s) 66
MspI CCGG 3 cut(s) 212, 242, 252
MspR9I CCNGG 1 cut(s) 253
MwoI GCNNNNNNNGC 1 cut(s) 11
NciI CCSGG 1 cut(s) 253
NdeII GATC 3 cut(s) 75, 88, 144
NlaIV GGNNCC 3 cut(s) 27, 276, 308
NmuCI GTSAC 1 cut(s) 169
OliI CACNNNNGTG 1 cut(s) 66
PkrI GCNGC 2 cut(s) 157, 311
PleI GAGTC 1 cut(s) 228
PpsI GAGTC 1 cut(s) 228
PspN4I GGNNCC 3 cut(s) 27, 276, 308
PspPI GGNCC 2 cut(s) 209, 239
RseI CAYNNNNRTG 1 cut(s) 66
SatI GCNGC 2 cut(s) 156, 310
Sau3AI GATC 3 cut(s) 75, 88, 144
Sau96I GGNCC 2 cut(s) 209, 239
SchI GAGTC 1 cut(s) 229
ScrFI CCNGG 1 cut(s) 253
SfaNI GCATC 1 cut(s) 142
SinI GGWCC 1 cut(s) 239
SmiMI CAYNNNNRTG 1 cut(s) 66
SsiI CCGC 4 cut(s) 174, 204, 304, 310
StyD4I CCNGG 1 cut(s) 251
TaaI ACNGT 2 cut(s) 111, 193
TauI GCSGC 1 cut(s) 312
TscAI CASTG 1 cut(s) 196
TseFI GTSAC 1 cut(s) 169
TseI GCWGC 1 cut(s) 155
Tsp45I GTSAC 1 cut(s) 169
TspDTI ATGAA 1 cut(s) 147
TspRI CASTG 1 cut(s) 196
VpaK11BI GGWCC 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.