Rh7DG193800
HSP70 Family

Heat shock cognate 70 kDa

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001841
Physical Location & Seq
Reverse (-)
18114312 .. 18118356
4045 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG193800.1

Sequence Viewer

Length: 363 bp
ATGTCAATGGCTATGGCGGCAAAAGGCGAAGGTCCAGCTATTGGAATCGATCTTGGAACAACTTACTCATGTGTTGGTGTTTGGCAACACGGGCGCGTTGAAATCATAACCAATGATCAGGGCAACAGAATAACACCGTCATATGTTGCTTTTACAAACACTAGGCGTTTAATTGGTGATGCCGCCAAGAACCAAGTTTCAACGAACCCCTTCAACACAGTTTTTGGGGTTTTGGTTGAATGCATCTTCTTCTTTGGAGCTTCTTTCTTCTGTGAACCAATTATTGGTTTTGCGGTTTTCAACTCCAGGAGCGTCTTGAGGCAGCTGCTATTGCCAGAACTGCACCTGTTGGATATCTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169
Pfam Domains
Protein Families
HSP70

Protein Analysis

120

Amino Acids

13.2

Weight (kDa)

6.04

Isoelectric Point (pI)

33.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 13 - 77 1.6e-26 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 41, 284
AccII CGCG 1 cut(s) 96
AciI CCGC 3 cut(s) 17, 183, 293
AfiI CCNNNNNNNGG 2 cut(s) 41, 284
AgsI TTSAA 5 cut(s) 101, 201, 214, 239, 301
AjnI CCWGG 1 cut(s) 305
AjuI GAANNNNNNNTTGG 2 cut(s) 267, 299
AluBI AGCT 3 cut(s) 38, 260, 325
AluI AGCT 3 cut(s) 38, 260, 325
ApeKI GCWGC 2 cut(s) 322, 325
Asp700I GAANNNNTTC 1 cut(s) 209
AspLEI GCGC 1 cut(s) 96
AspS9I GGNCC 1 cut(s) 32
AsuHPI GGTGA 1 cut(s) 188
AvaII GGWCC 1 cut(s) 32
BbvI GCAGC 2 cut(s) 312, 334
BciT130I CCWGG 1 cut(s) 307
BclI TGATCA 1 cut(s) 115
BfaI CTAG 1 cut(s) 162
BisI GCNGC 4 cut(s) 18, 183, 323, 326
BlsI GCNGC 4 cut(s) 19, 184, 324, 327
Bme1390I CCNGG 1 cut(s) 307
Bme18I GGWCC 1 cut(s) 32
BmgT120I GGNCC 1 cut(s) 32
BmrFI CCNGG 1 cut(s) 307
BmsI GCATC 2 cut(s) 169, 252
BpmI CTGGAG 1 cut(s) 289
BpuEI CTTGAG 1 cut(s) 337
Bsa29I ATCGAT 1 cut(s) 48
Bsc4I CCNNNNNNNGG 2 cut(s) 41, 284
BseBI CCWGG 1 cut(s) 307
BseCI ATCGAT 1 cut(s) 48
BseLI CCNNNNNNNGG 2 cut(s) 41, 284
BseXI GCAGC 2 cut(s) 312, 334
BsgI GTGCAG 1 cut(s) 326
Bsh1236I CGCG 1 cut(s) 96
BshVI ATCGAT 1 cut(s) 48
BslI CCNNNNNNNGG 2 cut(s) 41, 284
BsmI GAATGC 1 cut(s) 245
Bsp143I GATC 2 cut(s) 49, 115
BspACI CCGC 3 cut(s) 17, 183, 293
BspDI ATCGAT 1 cut(s) 48
BspFNI CGCG 1 cut(s) 96
BssMI GATC 2 cut(s) 49, 115
Bst2UI CCWGG 1 cut(s) 307
Bst4CI ACNGT 2 cut(s) 138, 220
BstFNI CGCG 1 cut(s) 96
BstHHI GCGC 1 cut(s) 96
BstKTI GATC 2 cut(s) 52, 118
BstMBI GATC 2 cut(s) 49, 115
BstMWI GCNNNNNNNGC 4 cut(s) 17, 91, 331, 340
BstNI CCWGG 1 cut(s) 307
BstSCI CCNGG 1 cut(s) 305
BstUI CGCG 1 cut(s) 96
BstV1I GCAGC 2 cut(s) 312, 334
Bsu15I ATCGAT 1 cut(s) 48
BsuTUI ATCGAT 1 cut(s) 48
CfoI GCGC 1 cut(s) 96
Cfr13I GGNCC 1 cut(s) 32
ClaI ATCGAT 1 cut(s) 48
CseI GACGC 1 cut(s) 301
CviAII CATG 1 cut(s) 69
CviJI RGCY 4 cut(s) 11, 38, 260, 325
CviKI_1 RGCY 4 cut(s) 11, 38, 260, 325
DpnI GATC 2 cut(s) 51, 117
DpnII GATC 2 cut(s) 49, 115
Eco32I GATATC 1 cut(s) 355
Eco47I GGWCC 1 cut(s) 32
EcoRII CCWGG 1 cut(s) 305
EcoRV GATATC 1 cut(s) 355
EcoT22I ATGCAT 1 cut(s) 245
FaeI CATG 1 cut(s) 72
FaiI YATR 5 cut(s) 14, 70, 107, 142, 144
FatI CATG 1 cut(s) 68
FauNDI CATATG 1 cut(s) 142
FbaI TGATCA 1 cut(s) 115
Fnu4HI GCNGC 4 cut(s) 18, 183, 323, 326
Fsp4HI GCNGC 4 cut(s) 18, 183, 323, 326
FspBI CTAG 1 cut(s) 162
GlaI GCGC 1 cut(s) 95
GluI GCNGC 4 cut(s) 18, 183, 323, 326
GsuI CTGGAG 1 cut(s) 289
HgaI GACGC 1 cut(s) 301
HhaI GCGC 1 cut(s) 96
Hin1II CATG 1 cut(s) 72
Hin6I GCGC 1 cut(s) 94
HinP1I GCGC 1 cut(s) 94
HinfI GANTC 1 cut(s) 45
HphI GGTGA 1 cut(s) 188
Hpy166II GTNNAC 1 cut(s) 275
Hpy188III TCNNGA 1 cut(s) 316
Hpy8I GTNNAC 1 cut(s) 275
HpyAV CCTTC 2 cut(s) 23, 220
HpyCH4III ACNGT 2 cut(s) 138, 220
HpyCH4V TGCA 2 cut(s) 243, 343
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 91, 331, 340
Hsp92II CATG 1 cut(s) 72
HspAI GCGC 1 cut(s) 94
Ksp22I TGATCA 1 cut(s) 115
Kzo9I GATC 2 cut(s) 49, 115
LmnI GCTCC 2 cut(s) 257, 309
LpnPI CCDG 7 cut(s) 48, 104, 292, 319, 343, 348, 359
Lsp1109I GCAGC 2 cut(s) 312, 334
LweI GCATC 2 cut(s) 169, 252
MaeI CTAG 1 cut(s) 162
MalI GATC 2 cut(s) 51, 117
MboI GATC 2 cut(s) 49, 115
MboII GAAGA 3 cut(s) 238, 241, 259
MluCI AATT 2 cut(s) 171, 279
MmeI TCCRAC 1 cut(s) 330
MnlI CCTC 1 cut(s) 312
Mph1103I ATGCAT 1 cut(s) 245
MroXI GAANNNNTTC 1 cut(s) 209
MseI TTAA 1 cut(s) 170
MspA1I CMGCKG 1 cut(s) 325
MspR9I CCNGG 1 cut(s) 307
Mva1269I GAATGC 1 cut(s) 245
MvaI CCWGG 1 cut(s) 307
MvnI CGCG 1 cut(s) 96
MwoI GCNNNNNNNGC 4 cut(s) 17, 91, 331, 340
NdeI CATATG 1 cut(s) 142
NdeII GATC 2 cut(s) 49, 115
NlaIII CATG 1 cut(s) 72
NsiI ATGCAT 1 cut(s) 245
PctI GAATGC 1 cut(s) 245
PdmI GAANNNNTTC 1 cut(s) 209
PfeI GAWTC 1 cut(s) 45
PflMI CCANNNNNTGG 2 cut(s) 41, 284
PfoI TCCNGGA 1 cut(s) 305
PkrI GCNGC 4 cut(s) 19, 184, 324, 327
Psp6I CCWGG 1 cut(s) 305
PspGI CCWGG 1 cut(s) 305
PspPI GGNCC 1 cut(s) 32
PvuII CAGCTG 1 cut(s) 325
SaqAI TTAA 1 cut(s) 170
SatI GCNGC 4 cut(s) 18, 183, 323, 326
Sau3AI GATC 2 cut(s) 49, 115
Sau96I GGNCC 1 cut(s) 32
ScrFI CCNGG 1 cut(s) 307
SetI ASST 5 cut(s) 34, 40, 262, 327, 348
SfaNI GCATC 2 cut(s) 169, 252
SinI GGWCC 1 cut(s) 32
SmlI CTYRAG 1 cut(s) 316
SmoI CTYRAG 1 cut(s) 316
Sse9I AATT 2 cut(s) 171, 279
SsiI CCGC 3 cut(s) 17, 183, 293
SspMI CTAG 1 cut(s) 162
StyD4I CCNGG 1 cut(s) 305
TaaI ACNGT 2 cut(s) 138, 220
TaqI TCGA 1 cut(s) 48
TasI AATT 2 cut(s) 171, 279
TauI GCSGC 2 cut(s) 20, 185
TfiI GAWTC 1 cut(s) 45
Tru1I TTAA 1 cut(s) 170
Tru9I TTAA 1 cut(s) 170
TseI GCWGC 2 cut(s) 322, 325
Van91I CCANNNNNTGG 2 cut(s) 41, 284
VpaK11BI GGWCC 1 cut(s) 32
XmnI GAANNNNTTC 1 cut(s) 209
XspI CTAG 1 cut(s) 162
Zsp2I ATGCAT 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.