FvH4_2g04820
HSP70 Family

Heat shock cognate 70 kDa

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001841
Physical Location & Seq
Forward (+)
3758756 .. 3759686
931 bp
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UTR
Exon/CDS
Intron
FvH4_2g04820.t1

Sequence Viewer

Length: 252 bp
ATGGCAAAAGGGGAGGCTCCAGCTATTGGCATTGATCTGGGAACAACTTATTCATGTGTTGGCGTTTGGCAACATGATCGGATTGAGATCATAGCCAATGATCAAGGAAACAGAACGACACCGTCCTATGTTGCTTTTACTGATACCGGGCGGTTGATCGGTGATGCTGCAAAGAATCAAGTCACCAGCATTCCAATCAACGCCGTTTTTGGAGTGATGTCAAATTATGGCCTTTCAAGGCTCGTGGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169
Pfam Domains
Protein Families
HSP70

Protein Analysis

84

Amino Acids

8.79

Weight (kDa)

5.55

Isoelectric Point (pI)

21.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 8 - 77 1.1e-25 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 26
AciI CCGC 1 cut(s) 151
AfiI CCNNNNNNNGG 1 cut(s) 26
AgsI TTSAA 1 cut(s) 237
AluBI AGCT 1 cut(s) 23
AluI AGCT 1 cut(s) 23
AoxI GGCC 1 cut(s) 229
ApeKI GCWGC 1 cut(s) 167
AsuC2I CCSGG 1 cut(s) 148
AsuHPI GGTGA 2 cut(s) 173, 175
BauI CACGAG 1 cut(s) 242
BbvI GCAGC 1 cut(s) 154
BceAI ACGGC 1 cut(s) 188
BcgI CGANNNNNNTGC 2 cut(s) 59, 93
BclI TGATCA 1 cut(s) 100
BcnI CCSGG 1 cut(s) 148
BisI GCNGC 1 cut(s) 168
BlsI GCNGC 1 cut(s) 169
Bme1390I CCNGG 1 cut(s) 148
BmiI GGNNCC 1 cut(s) 18
BmrFI CCNGG 1 cut(s) 148
BmsI GCATC 1 cut(s) 154
BpuMI CCSGG 1 cut(s) 148
BsaBI GATNNNNATC 1 cut(s) 86
Bsc4I CCNNNNNNNGG 1 cut(s) 26
Bse8I GATNNNNATC 1 cut(s) 86
BseJI GATNNNNATC 1 cut(s) 86
BseLI CCNNNNNNNGG 1 cut(s) 26
BseXI GCAGC 1 cut(s) 154
BshFI GGCC 1 cut(s) 231
BsiSI CCGG 1 cut(s) 147
BslI CCNNNNNNNGG 1 cut(s) 26
BsmI GAATGC 1 cut(s) 189
BsnI GGCC 1 cut(s) 231
Bsp143I GATC 5 cut(s) 34, 76, 87, 100, 156
BspACI CCGC 1 cut(s) 151
BspANI GGCC 1 cut(s) 231
BspLI GGNNCC 1 cut(s) 18
BssMI GATC 5 cut(s) 34, 76, 87, 100, 156
BssSI CACGAG 1 cut(s) 242
Bst2BI CACGAG 1 cut(s) 242
Bst4CI ACNGT 1 cut(s) 123
BstKTI GATC 5 cut(s) 37, 79, 90, 103, 159
BstMBI GATC 5 cut(s) 34, 76, 87, 100, 156
BstSCI CCNGG 1 cut(s) 146
BstV1I GCAGC 1 cut(s) 154
BsuRI GGCC 1 cut(s) 231
CspCI CAANNNNNGTGG 1 cut(s) 225
CviAII CATG 2 cut(s) 54, 74
CviJI RGCY 5 cut(s) 17, 23, 95, 231, 241
CviKI_1 RGCY 5 cut(s) 17, 23, 95, 231, 241
DpnI GATC 5 cut(s) 36, 78, 89, 102, 158
DpnII GATC 5 cut(s) 34, 76, 87, 100, 156
FaeI CATG 2 cut(s) 57, 77
FaiI YATR 5 cut(s) 55, 75, 92, 129, 228
FatI CATG 2 cut(s) 53, 73
FbaI TGATCA 1 cut(s) 100
Fnu4HI GCNGC 1 cut(s) 168
Fsp4HI GCNGC 1 cut(s) 168
GluI GCNGC 1 cut(s) 168
HaeIII GGCC 1 cut(s) 231
HapII CCGG 1 cut(s) 147
Hin1II CATG 2 cut(s) 57, 77
HinfI GANTC 1 cut(s) 175
HpaII CCGG 1 cut(s) 147
HphI GGTGA 2 cut(s) 173, 175
Hpy188I TCNGA 1 cut(s) 81
HpyCH4III ACNGT 1 cut(s) 123
HpyCH4V TGCA 1 cut(s) 170
Hsp92II CATG 2 cut(s) 57, 77
Ksp22I TGATCA 1 cut(s) 100
Kzo9I GATC 5 cut(s) 34, 76, 87, 100, 156
LmnI GCTCC 1 cut(s) 22
LpnPI CCDG 4 cut(s) 23, 33, 160, 199
Lsp1109I GCAGC 1 cut(s) 154
LweI GCATC 1 cut(s) 154
MaeIII GTNAC 1 cut(s) 181
MalI GATC 5 cut(s) 36, 78, 89, 102, 158
MboI GATC 5 cut(s) 34, 76, 87, 100, 156
MluCI AATT 1 cut(s) 223
MnlI CCTC 1 cut(s) 7
MspI CCGG 1 cut(s) 147
MspR9I CCNGG 1 cut(s) 148
Mva1269I GAATGC 1 cut(s) 189
NciI CCSGG 1 cut(s) 148
NdeII GATC 5 cut(s) 34, 76, 87, 100, 156
NlaIII CATG 2 cut(s) 57, 77
NlaIV GGNNCC 1 cut(s) 18
NmuCI GTSAC 1 cut(s) 181
PctI GAATGC 1 cut(s) 189
PfeI GAWTC 1 cut(s) 175
PflFI GACNNNGTC 1 cut(s) 121
PflMI CCANNNNNTGG 1 cut(s) 26
PkrI GCNGC 1 cut(s) 169
PspN4I GGNNCC 1 cut(s) 18
PsyI GACNNNGTC 1 cut(s) 121
SatI GCNGC 1 cut(s) 168
Sau3AI GATC 5 cut(s) 34, 76, 87, 100, 156
ScrFI CCNGG 1 cut(s) 148
SetI ASST 1 cut(s) 25
SfaNI GCATC 1 cut(s) 154
SgeI CNNG 9 cut(s) 32, 50, 66, 86, 116, 159, 160, 191, 198
Sse9I AATT 1 cut(s) 223
SsiI CCGC 1 cut(s) 151
StyD4I CCNGG 1 cut(s) 146
TaaI ACNGT 1 cut(s) 123
TasI AATT 1 cut(s) 223
TfiI GAWTC 1 cut(s) 175
TseFI GTSAC 1 cut(s) 181
TseI GCWGC 1 cut(s) 167
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 1 cut(s) 42
Tth111I GACNNNGTC 1 cut(s) 121
Van91I CCANNNNNTGG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.