Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001841

Physical Location & Seq

Genomic Coordinates Reverse (-)

4716867 .. 4719435

Gene Structure 2569 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG068700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGAAGAACACCAGAGCATTGTCATTGACATTTTTGCTTCTCTTTCTTTCAGAATTCTTGTGTGGAATAGCATTGGCCGCAGAAAGTTCATCGAAGCCAGAGACTGTGATCGGAATTGATCTCGGAACCACGTATTCTTGTGTGGGGGTGTACAGGAATAGCAATGTAGAGATCATAGTAAACGAGCAGGGCAATAGGATCACACCCTCTTGGGTTGCATTCACGGACACCGAGCGGTTGATCGGAGAGGCGGCAAAGAATCAAGCCCCTCAGAACTCGGAACGTACAATTTTCGATGTCAAGCGGCTCATAGGGAGAAGGTTTAATGATCCAGAGGTTCAGAGAGACATTAAGTTTTTGCCTTATAAGGTTGTGAATAGGGACGGGAAGCCTTATATTCAGGTCAAGGTTAAAGGTGAGGACAAGGTGTTTAGCCCTGAGGAAATCAGTGCTATGATACTGAGTAAGATGAAGGAAACAGCTGAGGCTTATTTGGGGAAGAAGATCACAAGGGCTGTCGTAACAGTTCCAGACCTTCTCTTGATTGAAGCTGCTCCTTTGAGTCTTGGAATCGAAACAGCTGGTGGTGTGATGACAAAATTGATTCCAAGGGGCACCACTATTCCAACCAAGAAGTCACAAATCTTCACCACTTATCAAGATCAGCAAACCACAGTGTCAATCAAGGTTTTTGAAGGTGAAAGAAGCTTAACAAAGGATTGTCATGAGCTCGGAAAATTTGATCTAACTGGCATTCCACCTGCTCCAAGGGGAGTGCCACAAATTGAAGTGACGTTTGAGGTTGATGCGAATGGAATCGTACAAGTGAAAGCAGAGGACAAGGCTGGAAAGAAGTCTCAATCCATTACGATTACTAATGACAATGGGCGCCTCAGCCAGGAAGAGATAGAGAGGATGGTGAAGGAAGCCGAGGAGTTTGCTGAAGAGGATAAGAAATTGAGAGAGAAGATAGATGCTAGGAACAAGCTTGAGACCTACATATACAATATGAGGAGTACTATTGGTGATAAGGATAAGCTGGCAGATAAGATTGACTCGGATGACAAGGAGAACATCGAAAACACACTGAAGGAGGCTCTGGAATGGTTGGATGATAACCAAAACGCAGAAAAAGATGATTTTGATGAGAAGCTGAAGGAGGTAGAAGCAGTGTGCAATCCAGTCATAAAGCAGGTCTATGAGAGGAGTGGTGGAAGTTCTGCTGGTTCGCAGGAGGACGAAGATGAACCAAATGATGAGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005788 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016592 GO:0022414 GO:0030154 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0070013 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04918 ko05020 map03060 map04141 map04918 map05020

Pfam Domains

Protein Families

HSP70

Protein Analysis

421

Amino Acids

47.07

Weight (kDa)

4.88

Isoelectric Point (pI)

36.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	36 - 177	8.7e-61	Hsp70 protein
HSP70	PF00012	178 - 401	9.3e-70	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001841)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g26910 FvH4_2g01780 FvH4_2g01930 FvH4_2g04820 FvH4_2g04841 FvH4_3g29971
malus_domestica	MD01G1129300.v1.1 MD01G1129600.v1.1
pyrus_communis	pycom04g11280 pycom07g18490 pycom12g13460 pycom14g02390
rosa_chinensis	RchiOBHm_Chr6g0244981 RchiOBHm_Chr7g0242871
rosa_laevigata	RLG00000025347
rosa_multiflora	Rmu_sc0000785.1_g000034 Rmu_sc0033687.1_g000001 Rmu_sc0036726.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255620 Rroxscaffold_6G00423680 Rroxscaffold_6G00424170
rosa_rugosa	Rorug07G0107600
rosa_samantha	Rh1BG301100 Rh1DG331900 Rh1DG332900 Rh1DG333000 Rh1DG333100 Rh1DG333400 Rh3AG068100 Rh3BG070400 Rh3BG070600 Rh3BG070700 Rh3CG068700 Rh3CG068900 Rh3CG069000 Rh3DG070500 Rh6BG014700 Rh6BG017000 Rh6BG022500 Rh6CG013700 Rh6CG021100 Rh6CG117700 Rh7AG473000 Rh7DG192400 Rh7DG193800 Rh7DG196100 Rh7DG196300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	366
AarI	CACCTGC	1 cut(s)	769
Acc36I	ACCTGC	2 cut(s)	769, 1183
AccB1I	GGYRCC	2 cut(s)	614, 888
AccBSI	CCGCTC	1 cut(s)	235
AciI	CCGC	4 cut(s)	78, 235, 251, 304
AclWI	GGATC	2 cut(s)	206, 323
AcoI	YGGCCR	1 cut(s)	75
AcsI	RAATTY	2 cut(s)	53, 737
AcuI	CTGAAG	3 cut(s)	963, 1109, 1175
AcyI	GRCGYC	1 cut(s)	889
AfaI	GTAC	4 cut(s)	152, 286, 822, 1018
AfiI	CCNNNNNNNGG	1 cut(s)	898
AgsI	TTSAA	3 cut(s)	548, 695, 788
AjnI	CCWGG	1 cut(s)	897
AluBI	AGCT	8 cut(s)	482, 551, 581, 708, 730, 988, 1039, 1153
AluI	AGCT	8 cut(s)	482, 551, 581, 708, 730, 988, 1039, 1153
Alw21I	GWGCWC	1 cut(s)	732
Alw26I	GTCTC	4 cut(s)	95, 339, 861, 986
AlwI	GGATC	2 cut(s)	206, 323
AlwNI	CAGNNNCTG	1 cut(s)	104
AoxI	GGCC	1 cut(s)	75
ApeKI	GCWGC	1 cut(s)	551
ApoI	RAATTY	2 cut(s)	53, 737
AspLEI	GCGC	1 cut(s)	891
AsuHPI	GGTGA	5 cut(s)	428, 640, 710, 931, 1037
AxyI	CCTNAGG	1 cut(s)	438
BaeGI	GKGCMC	1 cut(s)	617
BanI	GGYRCC	2 cut(s)	614, 888
BanII	GRGCYC	1 cut(s)	732
Bbv12I	GWGCWC	1 cut(s)	732
BbvCI	CCTCAGC	2 cut(s)	483, 893
BbvI	GCAGC	1 cut(s)	538
BccI	CCATC	1 cut(s)	910
BcgI	CGANNNNNNTGC	2 cut(s)	920, 954
BciT130I	CCWGG	1 cut(s)	899
BcoDI	GTCTC	4 cut(s)	95, 339, 861, 986
BfaI	CTAG	1 cut(s)	978
BfoI	RGCGCY	1 cut(s)	892
BfuAI	ACCTGC	2 cut(s)	769, 1183
BisI	GCNGC	4 cut(s)	78, 252, 305, 552
BlsI	GCNGC	4 cut(s)	79, 253, 306, 553
BmcAI	AGTACT	1 cut(s)	1018
Bme1390I	CCNGG	1 cut(s)	899
BmiI	GGNNCC	3 cut(s)	127, 616, 890
BmrFI	CCNGG	1 cut(s)	899
BmsI	GCATC	2 cut(s)	796, 964
Bpu10I	CCTNAGC	2 cut(s)	483, 893
BpuEI	CTTGAG	1 cut(s)	1010
BsaAI	YACGTR	1 cut(s)	132
BsaHI	GRCGYC	1 cut(s)	889
BsaI	GGTCTC	1 cut(s)	986
BsaJI	CCNNGG	3 cut(s)	608, 767, 930
Bsc4I	CCNNNNNNNGG	1 cut(s)	898
Bse1I	ACTGG	2 cut(s)	754, 1181
Bse21I	CCTNAGG	1 cut(s)	438
Bse3DI	GCAATG	1 cut(s)	169
BseBI	CCWGG	1 cut(s)	899
BseDI	CCNNGG	3 cut(s)	608, 767, 930
BseGI	GGATG	3 cut(s)	921, 1066, 1117
BseLI	CCNNNNNNNGG	1 cut(s)	898
BseMI	GCAATG	1 cut(s)	169
BseMII	CTCAG	5 cut(s)	284, 429, 452, 474, 907
BseNI	ACTGG	2 cut(s)	754, 1181
BseRI	GAGGAG	3 cut(s)	947, 1027, 1219
BseSI	GKGCMC	1 cut(s)	617
BseXI	GCAGC	1 cut(s)	538
BshFI	GGCC	1 cut(s)	77
BshNI	GGYRCC	2 cut(s)	614, 888
BsiHKAI	GWGCWC	1 cut(s)	732
BslFI	GGGAC	1 cut(s)	395
BslI	CCNNNNNNNGG	1 cut(s)	898
BsmAI	GTCTC	4 cut(s)	95, 339, 861, 986
BsmFI	GGGAC	1 cut(s)	395
BsmI	GAATGC	2 cut(s)	218, 753
BsnI	GGCC	1 cut(s)	77
Bso31I	GGTCTC	1 cut(s)	986
Bsp1286I	GDGCHC	2 cut(s)	617, 732
Bsp1407I	TGTACA	1 cut(s)	150
Bsp143I	GATC	9 cut(s)	108, 118, 171, 198, 240, 328, 504, 661, 742
BspACI	CCGC	4 cut(s)	78, 235, 251, 304
BspANI	GGCC	1 cut(s)	77
BspCNI	CTCAG	5 cut(s)	283, 430, 453, 475, 906
BspHI	TCATGA	1 cut(s)	724
BspLI	GGNNCC	3 cut(s)	127, 616, 890
BspMI	ACCTGC	2 cut(s)	769, 1183
BspPI	GGATC	2 cut(s)	206, 323
BspT107I	GGYRCC	2 cut(s)	614, 888
BspTNI	GGTCTC	1 cut(s)	986
BsrBI	CCGCTC	1 cut(s)	235
BsrDI	GCAATG	1 cut(s)	169
BsrGI	TGTACA	1 cut(s)	150
BsrI	ACTGG	2 cut(s)	754, 1181
BssECI	CCNNGG	3 cut(s)	608, 767, 930
BssMI	GATC	9 cut(s)	108, 118, 171, 198, 240, 328, 504, 661, 742
BssNI	GRCGYC	1 cut(s)	889
BssT1I	CCWWGG	2 cut(s)	608, 767
Bst2UI	CCWGG	1 cut(s)	899
Bst4CI	ACNGT	3 cut(s)	106, 526, 676
Bst6I	CTCTTC	2 cut(s)	897, 939
BstACI	GRCGYC	1 cut(s)	889
BstAUI	TGTACA	1 cut(s)	150
BstBAI	YACGTR	1 cut(s)	132
BstC8I	GCNNGC	1 cut(s)	1041
BstDEI	CTNAG	5 cut(s)	270, 438, 461, 483, 893
BstENI	CCTNNNNNAGG	1 cut(s)	896
BstF5I	GGATG	3 cut(s)	921, 1066, 1117
BstH2I	RGCGCY	1 cut(s)	892
BstHHI	GCGC	1 cut(s)	891
BstKTI	GATC	9 cut(s)	111, 121, 174, 201, 243, 331, 507, 664, 745
BstMAI	GTCTC	4 cut(s)	95, 339, 861, 986
BstMBI	GATC	9 cut(s)	108, 118, 171, 198, 240, 328, 504, 661, 742
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstNI	CCWGG	1 cut(s)	899
BstSCI	CCNGG	1 cut(s)	897
BstSLI	GKGCMC	1 cut(s)	617
BstV1I	GCAGC	1 cut(s)	538
Bsu36I	CCTNAGG	1 cut(s)	438
BsuRI	GGCC	1 cut(s)	77
BtsCI	GGATG	3 cut(s)	921, 1066, 1117
BtsI	GCAGTG	1 cut(s)	1176
BtsIMutI	CAGTG	4 cut(s)	454, 681, 1085, 1176
BveI	ACCTGC	2 cut(s)	769, 1183
Cac8I	GCNNGC	1 cut(s)	1041
CaiI	CAGNNNCTG	1 cut(s)	104
CciI	TCATGA	1 cut(s)	724
CfoI	GCGC	1 cut(s)	891
Csp6I	GTAC	4 cut(s)	151, 285, 821, 1017
CviAII	CATG	1 cut(s)	725
CviQI	GTAC	4 cut(s)	151, 285, 821, 1017
DdeI	CTNAG	5 cut(s)	270, 438, 461, 483, 893
DinI	GGCGCC	1 cut(s)	890
DpnI	GATC	9 cut(s)	110, 120, 173, 200, 242, 330, 506, 663, 744
DpnII	GATC	9 cut(s)	108, 118, 171, 198, 240, 328, 504, 661, 742
EaeI	YGGCCR	1 cut(s)	75
Eam1104I	CTCTTC	2 cut(s)	897, 939
EarI	CTCTTC	2 cut(s)	897, 939
Ecl136II	GAGCTC	1 cut(s)	730
Eco130I	CCWWGG	2 cut(s)	608, 767
Eco24I	GRGCYC	1 cut(s)	732
Eco31I	GGTCTC	1 cut(s)	986
Eco53kI	GAGCTC	1 cut(s)	730
Eco57I	CTGAAG	3 cut(s)	963, 1109, 1175
Eco81I	CCTNAGG	1 cut(s)	438
EcoICRI	GAGCTC	1 cut(s)	730
EcoNI	CCTNNNNNAGG	1 cut(s)	896
EcoRI	GAATTC	1 cut(s)	53
EcoRII	CCWGG	1 cut(s)	897
EcoT14I	CCWWGG	2 cut(s)	608, 767
EcoT38I	GRGCYC	1 cut(s)	732
EgeI	GGCGCC	1 cut(s)	890
EheI	GGCGCC	1 cut(s)	890
ErhI	CCWWGG	2 cut(s)	608, 767
FaeI	CATG	1 cut(s)	728
FaqI	GGGAC	1 cut(s)	395
FatI	CATG	1 cut(s)	724
Fnu4HI	GCNGC	4 cut(s)	78, 252, 305, 552
FokI	GGATG	3 cut(s)	928, 1073, 1124
FriOI	GRGCYC	1 cut(s)	732
Fsp4HI	GCNGC	4 cut(s)	78, 252, 305, 552
FspBI	CTAG	1 cut(s)	978
GlaI	GCGC	1 cut(s)	890
GluI	GCNGC	4 cut(s)	78, 252, 305, 552
HaeII	RGCGCY	1 cut(s)	892
HaeIII	GGCC	1 cut(s)	77
HhaI	GCGC	1 cut(s)	891
Hin1I	GRCGYC	1 cut(s)	889
Hin1II	CATG	1 cut(s)	728
Hin6I	GCGC	1 cut(s)	889
HinP1I	GCGC	1 cut(s)	889
HindIII	AAGCTT	2 cut(s)	706, 986
HinfI	GANTC	6 cut(s)	259, 562, 570, 604, 816, 1055
HphI	GGTGA	5 cut(s)	428, 640, 710, 931, 1037
Hpy166II	GTNNAC	2 cut(s)	151, 181
Hpy188I	TCNGA	9 cut(s)	52, 113, 125, 245, 273, 280, 342, 734, 1060
Hpy188III	TCNNGA	6 cut(s)	332, 530, 541, 659, 725, 1100
Hpy8I	GTNNAC	2 cut(s)	151, 181
HpyAV	CCTTC	7 cut(s)	312, 466, 545, 689, 916, 1084, 1150
HpyCH4III	ACNGT	3 cut(s)	106, 526, 676
HpyCH4IV	ACGT	3 cut(s)	131, 283, 794
HpyCH4V	TGCA	2 cut(s)	218, 1176
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpyF3I	CTNAG	5 cut(s)	270, 438, 461, 483, 893
HpySE526I	ACGT	3 cut(s)	131, 283, 794
Hsp92I	GRCGYC	1 cut(s)	889
Hsp92II	CATG	1 cut(s)	728
HspAI	GCGC	1 cut(s)	889
KasI	GGCGCC	1 cut(s)	888
Kzo9I	GATC	9 cut(s)	108, 118, 171, 198, 240, 328, 504, 661, 742
LmnI	GCTCC	2 cut(s)	559, 769
Lsp1109I	GCAGC	1 cut(s)	538
LweI	GCATC	2 cut(s)	796, 964
MaeI	CTAG	1 cut(s)	978
MaeII	ACGT	3 cut(s)	131, 283, 794
MaeIII	GTNAC	3 cut(s)	520, 636, 790
MalI	GATC	9 cut(s)	110, 120, 173, 200, 242, 330, 506, 663, 744
MbiI	CCGCTC	1 cut(s)	235
MboI	GATC	9 cut(s)	108, 118, 171, 198, 240, 328, 504, 661, 742
MboII	GAAGA	8 cut(s)	16, 511, 514, 637, 914, 956, 979, 1253
MhlI	GDGCHC	2 cut(s)	617, 732
MluCI	AATT	7 cut(s)	53, 114, 288, 599, 737, 783, 956
Mly113I	GGCGCC	1 cut(s)	889
MlyI	GAGTC	2 cut(s)	571, 1049
MmeI	TCCRAC	2 cut(s)	650, 1089
MseI	TTAA	4 cut(s)	324, 351, 411, 710
MspA1I	CMGCKG	2 cut(s)	482, 581
MspR9I	CCNGG	1 cut(s)	899
Mva1269I	GAATGC	2 cut(s)	218, 753
MvaI	CCWGG	1 cut(s)	899
MwoI	GCNNNNNNNGC	1 cut(s)	77
NarI	GGCGCC	1 cut(s)	889
NdeII	GATC	9 cut(s)	108, 118, 171, 198, 240, 328, 504, 661, 742
NlaIII	CATG	1 cut(s)	728
NlaIV	GGNNCC	3 cut(s)	127, 616, 890
NmeAIII	GCCGAG	1 cut(s)	955
NmuCI	GTSAC	2 cut(s)	636, 790
PagI	TCATGA	1 cut(s)	724
PaqCI	CACCTGC	1 cut(s)	769
PctI	GAATGC	2 cut(s)	218, 753
PfeI	GAWTC	4 cut(s)	259, 570, 604, 816
PkrI	GCNGC	4 cut(s)	79, 253, 306, 553
PleI	GAGTC	2 cut(s)	570, 1049
PluTI	GGCGCC	1 cut(s)	892
PpsI	GAGTC	2 cut(s)	570, 1049
Ppu21I	YACGTR	1 cut(s)	132
PsiI	TTATAA	1 cut(s)	366
Psp124BI	GAGCTC	1 cut(s)	732
Psp6I	CCWGG	1 cut(s)	897
PspGI	CCWGG	1 cut(s)	897
PspN4I	GGNNCC	3 cut(s)	127, 616, 890
PstNI	CAGNNNCTG	1 cut(s)	104
PvuII	CAGCTG	2 cut(s)	482, 581
RsaI	GTAC	4 cut(s)	152, 286, 822, 1018
RsaNI	GTAC	4 cut(s)	151, 285, 821, 1017
SacI	GAGCTC	1 cut(s)	732
SaqAI	TTAA	4 cut(s)	324, 351, 411, 710
SatI	GCNGC	4 cut(s)	78, 252, 305, 552
Sau3AI	GATC	9 cut(s)	108, 118, 171, 198, 240, 328, 504, 661, 742
ScaI	AGTACT	1 cut(s)	1018
SchI	GAGTC	2 cut(s)	571, 1049
ScrFI	CCNGG	1 cut(s)	899
SduI	GDGCHC	2 cut(s)	617, 732
SfaNI	GCATC	2 cut(s)	796, 964
SfoI	GGCGCC	1 cut(s)	890
SmlI	CTYRAG	1 cut(s)	989
SmoI	CTYRAG	1 cut(s)	989
Sse9I	AATT	7 cut(s)	53, 114, 288, 599, 737, 783, 956
SsiI	CCGC	4 cut(s)	78, 235, 251, 304
SspDI	GGCGCC	1 cut(s)	888
SspMI	CTAG	1 cut(s)	978
SstI	GAGCTC	1 cut(s)	732
StyD4I	CCNGG	1 cut(s)	897
StyI	CCWWGG	2 cut(s)	608, 767
TaaI	ACNGT	3 cut(s)	106, 526, 676
TaiI	ACGT	3 cut(s)	134, 286, 797
TaqI	TCGA	4 cut(s)	92, 294, 573, 1077
TasI	AATT	7 cut(s)	53, 114, 288, 599, 737, 783, 956
TatI	WGTACW	2 cut(s)	150, 1016
TauI	GCSGC	3 cut(s)	80, 254, 307
TfiI	GAWTC	4 cut(s)	259, 570, 604, 816
Tru1I	TTAA	4 cut(s)	324, 351, 411, 710
Tru9I	TTAA	4 cut(s)	324, 351, 411, 710
TscAI	CASTG	4 cut(s)	454, 681, 1092, 1176
TseFI	GTSAC	2 cut(s)	636, 790
TseI	GCWGC	1 cut(s)	551
Tsp45I	GTSAC	2 cut(s)	636, 790
TspDTI	ATGAA	4 cut(s)	17, 78, 485, 1260
TspGWI	ACGGA	1 cut(s)	239
TspRI	CASTG	4 cut(s)	454, 681, 1092, 1176
XagI	CCTNNNNNAGG	1 cut(s)	896
XapI	RAATTY	2 cut(s)	53, 737
XspI	CTAG	1 cut(s)	978
ZrmI	AGTACT	1 cut(s)	1018

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.