Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0001841

Physical Location & Seq

Genomic Coordinates Reverse (-)

4716867 .. 4720273

Gene Structure 3407 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG070400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGAGGTTTAATGATCCAGAGGTTCAGAGAGACATTAAGTTTTTGCCTTATAAGGTTGTGAATAGGGACGGGAAGCCTTATATTCAGGTCAAGGTTAAAGGTGAGGACAAGGTGTTTAGCCCTGAGGAAATCAGTGCTATGATACTGAGTAAGATGAAGGAAACAGCTGAGGCTTATTTGGGGAAGAAGATCACAAGGGCTGTCGTAACAGTTCCAGACCTTCTCTTGATTGAAGCTGCTCCTTTGAGTCTTGGAATCGAAACAGCTGGTGGTGTGATGACAAAATTGATTCCAAGGGGCACCACTATTCCAACCAAGAAGTCACAAATCTTCACCACTTATCAAGATCAGCAAACCACAGTGTCAATCAAGGTTTTTGAAGGTGAAAGAAGCTTAACAAAGGATTGTCATGAGCTCGGAAAATTTGATCTAACTGGCATTCCACCTGCTCCAAGGGGAGTGCCACAAATTGAAGTGACGTTTGAGGTTGATGCGAATGGAATCGTACAAGTGAAAGCAGAGGACAAGGCTGGAAAGAAGTCTCAATCCATTACGATTACTAATGACAATGGGCGCCTCAGCCAGGAAGAGATAGAGAGGATGGTGAAGGAAGCCGAGGAGTTTGCTGAAGAGGATAAGAAATTGAGAGAGAAGATAGATGCTAGGAACAAGCTTGAGACCTACATATACAATATGAGGAGTACTATTGGTGATAAGGATAAGCTGGCAGATAAGATTGACTCGGATGACAAGGAGAACATCGAAAACACACTGAAGGAGGCTCTGGAATGGTTGGATGATAACCAAAACGCAGAAAAAGATGATTTTGATGAGAAGCTGAAGGAGGTAGAAGCAGTGTGCAATCCAGTCATAAAGCAGGTCTATGAGAGGAGTGGTGGAAGTTCTGCTGGTTCGCAGGAGGACGAAGATGAACCAAATGATGAGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005788 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016592 GO:0022414 GO:0030154 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0070013 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04918 ko05020 map03060 map04141 map04918 map05020

Pfam Domains

Protein Families

HSP70

Protein Analysis

316

Amino Acids

35.54

Weight (kDa)

4.78

Isoelectric Point (pI)

36.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	2 - 72	6.9e-22	Hsp70 protein
HSP70	PF00012	73 - 296	7.1e-70	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001841)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g26910 FvH4_2g01780 FvH4_2g01930 FvH4_2g04820 FvH4_2g04841 FvH4_3g29971
malus_domestica	MD01G1129300.v1.1 MD01G1129600.v1.1
pyrus_communis	pycom04g11280 pycom07g18490 pycom12g13460 pycom14g02390
rosa_chinensis	RchiOBHm_Chr6g0244981 RchiOBHm_Chr7g0242871
rosa_laevigata	RLG00000025347
rosa_multiflora	Rmu_sc0000785.1_g000034 Rmu_sc0033687.1_g000001 Rmu_sc0036726.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255620 Rroxscaffold_6G00423680 Rroxscaffold_6G00424170
rosa_rugosa	Rorug07G0107600
rosa_samantha	Rh1BG301100 Rh1DG331900 Rh1DG332900 Rh1DG333000 Rh1DG333100 Rh1DG333400 Rh3AG068100 Rh3BG070400 Rh3BG070600 Rh3BG070700 Rh3CG068700 Rh3CG068900 Rh3CG069000 Rh3DG070500 Rh6BG014700 Rh6BG017000 Rh6BG022500 Rh6CG013700 Rh6CG021100 Rh6CG117700 Rh7AG473000 Rh7DG192400 Rh7DG193800 Rh7DG196100 Rh7DG196300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	51
AarI	CACCTGC	1 cut(s)	454
Acc36I	ACCTGC	2 cut(s)	454, 868
AccB1I	GGYRCC	2 cut(s)	299, 573
AclWI	GGATC	1 cut(s)	8
AcsI	RAATTY	1 cut(s)	422
AcuI	CTGAAG	3 cut(s)	648, 794, 860
AcyI	GRCGYC	1 cut(s)	574
AfaI	GTAC	2 cut(s)	507, 703
AfiI	CCNNNNNNNGG	1 cut(s)	583
AgsI	TTSAA	3 cut(s)	233, 380, 473
AjnI	CCWGG	1 cut(s)	582
AluBI	AGCT	8 cut(s)	167, 236, 266, 393, 415, 673, 724, 838
AluI	AGCT	8 cut(s)	167, 236, 266, 393, 415, 673, 724, 838
Alw21I	GWGCWC	1 cut(s)	417
Alw26I	GTCTC	3 cut(s)	24, 546, 671
AlwI	GGATC	1 cut(s)	8
ApeKI	GCWGC	1 cut(s)	236
ApoI	RAATTY	1 cut(s)	422
AspLEI	GCGC	1 cut(s)	576
AsuHPI	GGTGA	5 cut(s)	113, 325, 395, 616, 722
AxyI	CCTNAGG	1 cut(s)	123
BaeGI	GKGCMC	1 cut(s)	302
BanI	GGYRCC	2 cut(s)	299, 573
BanII	GRGCYC	1 cut(s)	417
Bbv12I	GWGCWC	1 cut(s)	417
BbvCI	CCTCAGC	2 cut(s)	168, 578
BbvI	GCAGC	1 cut(s)	223
BccI	CCATC	1 cut(s)	595
BcgI	CGANNNNNNTGC	2 cut(s)	605, 639
BciT130I	CCWGG	1 cut(s)	584
BcoDI	GTCTC	3 cut(s)	24, 546, 671
BfaI	CTAG	1 cut(s)	663
BfoI	RGCGCY	1 cut(s)	577
BfuAI	ACCTGC	2 cut(s)	454, 868
BisI	GCNGC	1 cut(s)	237
BlsI	GCNGC	1 cut(s)	238
BmcAI	AGTACT	1 cut(s)	703
Bme1390I	CCNGG	1 cut(s)	584
BmiI	GGNNCC	2 cut(s)	301, 575
BmrFI	CCNGG	1 cut(s)	584
BmsI	GCATC	2 cut(s)	481, 649
Bpu10I	CCTNAGC	2 cut(s)	168, 578
BpuEI	CTTGAG	1 cut(s)	695
BsaHI	GRCGYC	1 cut(s)	574
BsaI	GGTCTC	1 cut(s)	671
BsaJI	CCNNGG	3 cut(s)	293, 452, 615
Bsc4I	CCNNNNNNNGG	1 cut(s)	583
Bse1I	ACTGG	2 cut(s)	439, 866
Bse21I	CCTNAGG	1 cut(s)	123
BseBI	CCWGG	1 cut(s)	584
BseDI	CCNNGG	3 cut(s)	293, 452, 615
BseGI	GGATG	3 cut(s)	606, 751, 802
BseLI	CCNNNNNNNGG	1 cut(s)	583
BseMII	CTCAG	4 cut(s)	114, 137, 159, 592
BseNI	ACTGG	2 cut(s)	439, 866
BseRI	GAGGAG	3 cut(s)	632, 712, 904
BseSI	GKGCMC	1 cut(s)	302
BseXI	GCAGC	1 cut(s)	223
BshNI	GGYRCC	2 cut(s)	299, 573
BsiHKAI	GWGCWC	1 cut(s)	417
BslFI	GGGAC	1 cut(s)	80
BslI	CCNNNNNNNGG	1 cut(s)	583
BsmAI	GTCTC	3 cut(s)	24, 546, 671
BsmFI	GGGAC	1 cut(s)	80
BsmI	GAATGC	1 cut(s)	438
Bso31I	GGTCTC	1 cut(s)	671
Bsp1286I	GDGCHC	2 cut(s)	302, 417
Bsp143I	GATC	4 cut(s)	13, 189, 346, 427
BspCNI	CTCAG	4 cut(s)	115, 138, 160, 591
BspHI	TCATGA	1 cut(s)	409
BspLI	GGNNCC	2 cut(s)	301, 575
BspMI	ACCTGC	2 cut(s)	454, 868
BspPI	GGATC	1 cut(s)	8
BspT107I	GGYRCC	2 cut(s)	299, 573
BspTNI	GGTCTC	1 cut(s)	671
BsrI	ACTGG	2 cut(s)	439, 866
BssECI	CCNNGG	3 cut(s)	293, 452, 615
BssMI	GATC	4 cut(s)	13, 189, 346, 427
BssNI	GRCGYC	1 cut(s)	574
BssT1I	CCWWGG	2 cut(s)	293, 452
Bst2UI	CCWGG	1 cut(s)	584
Bst4CI	ACNGT	2 cut(s)	211, 361
Bst6I	CTCTTC	2 cut(s)	582, 624
BstACI	GRCGYC	1 cut(s)	574
BstC8I	GCNNGC	1 cut(s)	726
BstDEI	CTNAG	4 cut(s)	123, 146, 168, 578
BstENI	CCTNNNNNAGG	1 cut(s)	581
BstF5I	GGATG	3 cut(s)	606, 751, 802
BstH2I	RGCGCY	1 cut(s)	577
BstHHI	GCGC	1 cut(s)	576
BstKTI	GATC	4 cut(s)	16, 192, 349, 430
BstMAI	GTCTC	3 cut(s)	24, 546, 671
BstMBI	GATC	4 cut(s)	13, 189, 346, 427
BstNI	CCWGG	1 cut(s)	584
BstSCI	CCNGG	1 cut(s)	582
BstSLI	GKGCMC	1 cut(s)	302
BstV1I	GCAGC	1 cut(s)	223
Bsu36I	CCTNAGG	1 cut(s)	123
BtsCI	GGATG	3 cut(s)	606, 751, 802
BtsI	GCAGTG	1 cut(s)	861
BtsIMutI	CAGTG	4 cut(s)	139, 366, 770, 861
BveI	ACCTGC	2 cut(s)	454, 868
Cac8I	GCNNGC	1 cut(s)	726
CciI	TCATGA	1 cut(s)	409
CfoI	GCGC	1 cut(s)	576
Csp6I	GTAC	2 cut(s)	506, 702
CviAII	CATG	1 cut(s)	410
CviQI	GTAC	2 cut(s)	506, 702
DdeI	CTNAG	4 cut(s)	123, 146, 168, 578
DinI	GGCGCC	1 cut(s)	575
DpnI	GATC	4 cut(s)	15, 191, 348, 429
DpnII	GATC	4 cut(s)	13, 189, 346, 427
Eam1104I	CTCTTC	2 cut(s)	582, 624
EarI	CTCTTC	2 cut(s)	582, 624
Ecl136II	GAGCTC	1 cut(s)	415
Eco130I	CCWWGG	2 cut(s)	293, 452
Eco24I	GRGCYC	1 cut(s)	417
Eco31I	GGTCTC	1 cut(s)	671
Eco53kI	GAGCTC	1 cut(s)	415
Eco57I	CTGAAG	3 cut(s)	648, 794, 860
Eco81I	CCTNAGG	1 cut(s)	123
EcoICRI	GAGCTC	1 cut(s)	415
EcoNI	CCTNNNNNAGG	1 cut(s)	581
EcoRII	CCWGG	1 cut(s)	582
EcoT14I	CCWWGG	2 cut(s)	293, 452
EcoT38I	GRGCYC	1 cut(s)	417
EgeI	GGCGCC	1 cut(s)	575
EheI	GGCGCC	1 cut(s)	575
ErhI	CCWWGG	2 cut(s)	293, 452
FaeI	CATG	1 cut(s)	413
FaiI	YATR	9 cut(s)	51, 81, 140, 411, 686, 688, 695, 872, 885
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	1 cut(s)	409
Fnu4HI	GCNGC	1 cut(s)	237
FokI	GGATG	3 cut(s)	613, 758, 809
FriOI	GRGCYC	1 cut(s)	417
Fsp4HI	GCNGC	1 cut(s)	237
FspBI	CTAG	1 cut(s)	663
GlaI	GCGC	1 cut(s)	575
GluI	GCNGC	1 cut(s)	237
HaeII	RGCGCY	1 cut(s)	577
HhaI	GCGC	1 cut(s)	576
Hin1I	GRCGYC	1 cut(s)	574
Hin1II	CATG	1 cut(s)	413
Hin6I	GCGC	1 cut(s)	574
HinP1I	GCGC	1 cut(s)	574
HindIII	AAGCTT	2 cut(s)	391, 671
HinfI	GANTC	5 cut(s)	247, 255, 289, 501, 740
HphI	GGTGA	5 cut(s)	113, 325, 395, 616, 722
Hpy188I	TCNGA	3 cut(s)	27, 419, 745
Hpy188III	TCNNGA	6 cut(s)	17, 215, 226, 344, 410, 785
HpyAV	CCTTC	6 cut(s)	151, 230, 374, 601, 769, 835
HpyCH4III	ACNGT	2 cut(s)	211, 361
HpyCH4IV	ACGT	1 cut(s)	479
HpyCH4V	TGCA	1 cut(s)	861
HpyF3I	CTNAG	4 cut(s)	123, 146, 168, 578
HpySE526I	ACGT	1 cut(s)	479
Hsp92I	GRCGYC	1 cut(s)	574
Hsp92II	CATG	1 cut(s)	413
HspAI	GCGC	1 cut(s)	574
KasI	GGCGCC	1 cut(s)	573
Kzo9I	GATC	4 cut(s)	13, 189, 346, 427
LmnI	GCTCC	2 cut(s)	244, 454
Lsp1109I	GCAGC	1 cut(s)	223
LweI	GCATC	2 cut(s)	481, 649
MaeI	CTAG	1 cut(s)	663
MaeII	ACGT	1 cut(s)	479
MaeIII	GTNAC	3 cut(s)	205, 321, 475
MalI	GATC	4 cut(s)	15, 191, 348, 429
MboI	GATC	4 cut(s)	13, 189, 346, 427
MboII	GAAGA	7 cut(s)	196, 199, 322, 599, 641, 664, 938
MhlI	GDGCHC	2 cut(s)	302, 417
MluCI	AATT	4 cut(s)	284, 422, 468, 641
Mly113I	GGCGCC	1 cut(s)	574
MlyI	GAGTC	2 cut(s)	256, 734
MmeI	TCCRAC	2 cut(s)	335, 774
MseI	TTAA	4 cut(s)	9, 36, 96, 395
MspA1I	CMGCKG	2 cut(s)	167, 266
MspR9I	CCNGG	1 cut(s)	584
Mva1269I	GAATGC	1 cut(s)	438
MvaI	CCWGG	1 cut(s)	584
NarI	GGCGCC	1 cut(s)	574
NdeII	GATC	4 cut(s)	13, 189, 346, 427
NlaIII	CATG	1 cut(s)	413
NlaIV	GGNNCC	2 cut(s)	301, 575
NmeAIII	GCCGAG	1 cut(s)	640
NmuCI	GTSAC	2 cut(s)	321, 475
PagI	TCATGA	1 cut(s)	409
PaqCI	CACCTGC	1 cut(s)	454
PctI	GAATGC	1 cut(s)	438
PfeI	GAWTC	3 cut(s)	255, 289, 501
PkrI	GCNGC	1 cut(s)	238
PleI	GAGTC	2 cut(s)	255, 734
PluTI	GGCGCC	1 cut(s)	577
PpsI	GAGTC	2 cut(s)	255, 734
PsiI	TTATAA	1 cut(s)	51
Psp124BI	GAGCTC	1 cut(s)	417
Psp6I	CCWGG	1 cut(s)	582
PspGI	CCWGG	1 cut(s)	582
PspN4I	GGNNCC	2 cut(s)	301, 575
PvuII	CAGCTG	2 cut(s)	167, 266
RsaI	GTAC	2 cut(s)	507, 703
RsaNI	GTAC	2 cut(s)	506, 702
SacI	GAGCTC	1 cut(s)	417
SaqAI	TTAA	4 cut(s)	9, 36, 96, 395
SatI	GCNGC	1 cut(s)	237
Sau3AI	GATC	4 cut(s)	13, 189, 346, 427
ScaI	AGTACT	1 cut(s)	703
SchI	GAGTC	2 cut(s)	256, 734
ScrFI	CCNGG	1 cut(s)	584
SduI	GDGCHC	2 cut(s)	302, 417
SfaNI	GCATC	2 cut(s)	481, 649
SfoI	GGCGCC	1 cut(s)	575
SmlI	CTYRAG	1 cut(s)	674
SmoI	CTYRAG	1 cut(s)	674
Sse9I	AATT	4 cut(s)	284, 422, 468, 641
SspDI	GGCGCC	1 cut(s)	573
SspMI	CTAG	1 cut(s)	663
SstI	GAGCTC	1 cut(s)	417
StyD4I	CCNGG	1 cut(s)	582
StyI	CCWWGG	2 cut(s)	293, 452
TaaI	ACNGT	2 cut(s)	211, 361
TaiI	ACGT	1 cut(s)	482
TaqI	TCGA	2 cut(s)	258, 762
TasI	AATT	4 cut(s)	284, 422, 468, 641
TatI	WGTACW	1 cut(s)	701
TfiI	GAWTC	3 cut(s)	255, 289, 501
Tru1I	TTAA	4 cut(s)	9, 36, 96, 395
Tru9I	TTAA	4 cut(s)	9, 36, 96, 395
TscAI	CASTG	4 cut(s)	139, 366, 777, 861
TseFI	GTSAC	2 cut(s)	321, 475
TseI	GCWGC	1 cut(s)	236
Tsp45I	GTSAC	2 cut(s)	321, 475
TspDTI	ATGAA	2 cut(s)	170, 945
TspRI	CASTG	4 cut(s)	139, 366, 777, 861
XagI	CCTNNNNNAGG	1 cut(s)	581
XapI	RAATTY	1 cut(s)	422
XspI	CTAG	1 cut(s)	663
ZrmI	AGTACT	1 cut(s)	703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.