Rh6CG117700
HSP70 Family

Belongs to the heat shock protein 70 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0001841
Physical Location & Seq
Reverse (-)
13692941 .. 13693312
372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG117700.1

Sequence Viewer

Length: 372 bp
ATGGCATTGGCTGCAAGAGGTGAGGGTCCAGCTATCGGTATTGACCTTGGAACAACTTACTCATGCGTTGGTGTTTGGCAACATGATCGTGTTGAGATCATAGCCAATGATCAAGGAAACAGAACGACGCCGTCATGTGTTGCTTTTACCAACACCGGGCGTTTGATTGGTGATGCTGCCAAGAACCAGGCTTCTATGAACCCCATCAACACTATTTTTGGTACGTTTATCTTCATACTTACTAATAACTATTCTCTTAACATTATCAACGTCATCTCATTCAGTTGTTCAAAGCTAGAATTTATATGTTTTCAGGCCATCCATGCATATATTCTTCCTGATATACCTCTCTTAATATATTTTTCAACTTAA

Protein Analysis

123

Amino Acids

13.41

Weight (kDa)

5.45

Isoelectric Point (pI)

20.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 11 - 75 4.3e-27 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 299
AcyI GRCGYC 1 cut(s) 128
AfaI GTAC 1 cut(s) 223
AfiI CCNNNNNNNGG 2 cut(s) 35, 156
AgsI TTSAA 2 cut(s) 291, 366
AjnI CCWGG 1 cut(s) 186
AluBI AGCT 2 cut(s) 32, 295
AluI AGCT 2 cut(s) 32, 295
AoxI GGCC 1 cut(s) 315
ApeKI GCWGC 2 cut(s) 11, 176
ApoI RAATTY 1 cut(s) 299
AspS9I GGNCC 1 cut(s) 26
AsuC2I CCSGG 1 cut(s) 157
AsuHPI GGTGA 2 cut(s) 32, 182
AvaII GGWCC 1 cut(s) 26
BbvI GCAGC 1 cut(s) 163
BccI CCATC 2 cut(s) 212, 326
BceAI ACGGC 1 cut(s) 115
BcgI CGANNNNNNTGC 2 cut(s) 68, 102
BciT130I CCWGG 1 cut(s) 188
BclI TGATCA 1 cut(s) 109
BcnI CCSGG 1 cut(s) 157
BfaI CTAG 1 cut(s) 296
BisI GCNGC 2 cut(s) 12, 177
BlsI GCNGC 2 cut(s) 13, 178
Bme1390I CCNGG 2 cut(s) 157, 188
Bme18I GGWCC 1 cut(s) 26
BmgT120I GGNCC 1 cut(s) 26
BmiI GGNNCC 1 cut(s) 27
BmrFI CCNGG 2 cut(s) 157, 188
BmsI GCATC 1 cut(s) 163
BpuMI CCSGG 1 cut(s) 157
BsaHI GRCGYC 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 46
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 156
BseBI CCWGG 1 cut(s) 188
BseDI CCNNGG 1 cut(s) 46
BseGI GGATG 1 cut(s) 318
BseLI CCNNNNNNNGG 2 cut(s) 35, 156
BseXI GCAGC 1 cut(s) 163
BshFI GGCC 1 cut(s) 317
BsiSI CCGG 1 cut(s) 156
BslI CCNNNNNNNGG 2 cut(s) 35, 156
BsnI GGCC 1 cut(s) 317
Bsp143I GATC 3 cut(s) 85, 96, 109
BspANI GGCC 1 cut(s) 317
BspLI GGNNCC 1 cut(s) 27
BssECI CCNNGG 1 cut(s) 46
BssMI GATC 3 cut(s) 85, 96, 109
BssNI GRCGYC 1 cut(s) 128
BssT1I CCWWGG 1 cut(s) 46
Bst2UI CCWGG 1 cut(s) 188
BstACI GRCGYC 1 cut(s) 128
BstAPI GCANNNNNTGC 1 cut(s) 11
BstF5I GGATG 1 cut(s) 318
BstKTI GATC 3 cut(s) 88, 99, 112
BstMBI GATC 3 cut(s) 85, 96, 109
BstMWI GCNNNNNNNGC 2 cut(s) 11, 323
BstNI CCWGG 1 cut(s) 188
BstSCI CCNGG 2 cut(s) 155, 186
BstV1I GCAGC 1 cut(s) 163
BsuRI GGCC 1 cut(s) 317
BtsCI GGATG 1 cut(s) 318
Cfr13I GGNCC 1 cut(s) 26
CseI GACGC 1 cut(s) 136
Csp6I GTAC 1 cut(s) 222
CviAII CATG 4 cut(s) 63, 83, 135, 323
CviJI RGCY 6 cut(s) 11, 32, 104, 191, 295, 317
CviKI_1 RGCY 6 cut(s) 11, 32, 104, 191, 295, 317
CviQI GTAC 1 cut(s) 222
DpnI GATC 3 cut(s) 87, 98, 111
DpnII GATC 3 cut(s) 85, 96, 109
Eco130I CCWWGG 1 cut(s) 46
Eco47I GGWCC 1 cut(s) 26
EcoRII CCWGG 1 cut(s) 186
EcoT14I CCWWGG 1 cut(s) 46
EcoT22I ATGCAT 1 cut(s) 328
ErhI CCWWGG 1 cut(s) 46
FaeI CATG 4 cut(s) 66, 86, 138, 326
FatI CATG 4 cut(s) 62, 82, 134, 322
FbaI TGATCA 1 cut(s) 109
Fnu4HI GCNGC 2 cut(s) 12, 177
FokI GGATG 1 cut(s) 305
Fsp4HI GCNGC 2 cut(s) 12, 177
FspBI CTAG 1 cut(s) 296
GluI GCNGC 2 cut(s) 12, 177
HaeIII GGCC 1 cut(s) 317
HapII CCGG 1 cut(s) 156
HgaI GACGC 1 cut(s) 136
Hin1I GRCGYC 1 cut(s) 128
Hin1II CATG 4 cut(s) 66, 86, 138, 326
HpaII CCGG 1 cut(s) 156
HphI GGTGA 2 cut(s) 32, 182
Hpy188III TCNNGA 1 cut(s) 338
Hpy99I CGWCG 1 cut(s) 130
HpyCH4IV ACGT 2 cut(s) 224, 270
HpyCH4V TGCA 2 cut(s) 14, 326
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 323
HpySE526I ACGT 2 cut(s) 224, 270
Hsp92I GRCGYC 1 cut(s) 128
Hsp92II CATG 4 cut(s) 66, 86, 138, 326
Ksp22I TGATCA 1 cut(s) 109
Kzo9I GATC 3 cut(s) 85, 96, 109
LpnPI CCDG 6 cut(s) 42, 169, 173, 200, 299, 351
Lsp1109I GCAGC 1 cut(s) 163
LweI GCATC 1 cut(s) 163
MaeI CTAG 1 cut(s) 296
MaeII ACGT 2 cut(s) 224, 270
MalI GATC 3 cut(s) 87, 98, 111
MboI GATC 3 cut(s) 85, 96, 109
MboII GAAGA 2 cut(s) 223, 326
MluCI AATT 1 cut(s) 299
MnlI CCTC 3 cut(s) 11, 16, 357
Mph1103I ATGCAT 1 cut(s) 328
MseI TTAA 3 cut(s) 258, 353, 370
MslI CAYNNNNRTG 1 cut(s) 87
MspI CCGG 1 cut(s) 156
MspR9I CCNGG 2 cut(s) 157, 188
MvaI CCWGG 1 cut(s) 188
MwoI GCNNNNNNNGC 2 cut(s) 11, 323
NciI CCSGG 1 cut(s) 157
NdeII GATC 3 cut(s) 85, 96, 109
NlaIII CATG 4 cut(s) 66, 86, 138, 326
NlaIV GGNNCC 1 cut(s) 27
NsiI ATGCAT 1 cut(s) 328
PflFI GACNNNGTC 1 cut(s) 130
PkrI GCNGC 2 cut(s) 13, 178
Psp6I CCWGG 1 cut(s) 186
PspGI CCWGG 1 cut(s) 186
PspN4I GGNNCC 1 cut(s) 27
PspPI GGNCC 1 cut(s) 26
PsyI GACNNNGTC 1 cut(s) 130
RsaI GTAC 1 cut(s) 223
RsaNI GTAC 1 cut(s) 222
RseI CAYNNNNRTG 1 cut(s) 87
SaqAI TTAA 3 cut(s) 258, 353, 370
SatI GCNGC 2 cut(s) 12, 177
Sau3AI GATC 3 cut(s) 85, 96, 109
Sau96I GGNCC 1 cut(s) 26
ScrFI CCNGG 2 cut(s) 157, 188
SetI ASST 7 cut(s) 22, 34, 48, 227, 273, 297, 349
SfaNI GCATC 1 cut(s) 163
SinI GGWCC 1 cut(s) 26
SmiMI CAYNNNNRTG 1 cut(s) 87
Sse9I AATT 1 cut(s) 299
SspMI CTAG 1 cut(s) 296
StyD4I CCNGG 2 cut(s) 155, 186
StyI CCWWGG 1 cut(s) 46
TaiI ACGT 2 cut(s) 227, 273
TasI AATT 1 cut(s) 299
Tru1I TTAA 3 cut(s) 258, 353, 370
Tru9I TTAA 3 cut(s) 258, 353, 370
TseI GCWGC 2 cut(s) 11, 176
TspDTI ATGAA 2 cut(s) 212, 223
Tth111I GACNNNGTC 1 cut(s) 130
VpaK11BI GGWCC 1 cut(s) 26
XapI RAATTY 1 cut(s) 299
XspI CTAG 1 cut(s) 296
Zsp2I ATGCAT 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.