FvH4_4g10870

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0001684
Physical Location & Seq
Reverse (-)
14557562 .. 14559712
2151 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g10870.t1

Sequence Viewer

Length: 576 bp
ATGAAACCGGTTGTCCTGCTCATTCTTTTTTCTGTTTGTTCCCCTATTAATGATGGGACTTATAGAATGGTTGAAGTGTTTCCTATCATATTTGACATCTCCGGCGAAACACAGGATGTTTCTGATCCTGAAGTTCTGGTGGCTTTTCCAATTCTTGGTGATTCAGATGAGGCAAGTTTTGTGGCCTGGACAACTACTCTGTCGACTCTTCCTGGCCATTTAGAACTATGTGTCAATGCAAAATTTACCTATTTGAACTTCCGGTGGGAAGCTGAGCCGAATGATGCTACAATTGTCAACGTCATGTTCTTCTGTTTGTTCCTTGAGTTCAGACCAGCAGGTGCATTCCTTTATCAGTACACTGCCATATCTCAGGGCAGTGGGGTTTCTCCTGATACTGAAATCTTCCTTGGGTTGTTAACAGCATGCAGTGATGCAAACCTGGTAAAGCAACTGTTGATGTTCTTCAATGCTATGAAGAAAGTTCACTGGAATCTCCTTGAAACACAGAATGATGCTTGTTTGGTCGATATGTATGGTCGAGCTGGGCTCTTGGAGGAAGCAGAGGCTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

192

Amino Acids

21.28

Weight (kDa)

4.2

Isoelectric Point (pI)

34.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 329
Acc36I ACCTGC 1 cut(s) 329
AccB7I CCANNNNNTGG 1 cut(s) 155
AccI GTMKAC 1 cut(s) 203
AclWI GGATC 1 cut(s) 119
AcoI YGGCCR 1 cut(s) 214
AcsI RAATTY 1 cut(s) 242
AcuI CTGAAG 1 cut(s) 150
AfaI GTAC 1 cut(s) 359
AfiI CCNNNNNNNGG 1 cut(s) 155
AgeI ACCGGT 1 cut(s) 7
AgsI TTSAA 4 cut(s) 74, 256, 469, 503
AjnI CCWGG 3 cut(s) 185, 211, 441
AjuI GAANNNNNNNTTGG 2 cut(s) 393, 425
AluBI AGCT 2 cut(s) 272, 545
AluI AGCT 2 cut(s) 272, 545
AlwI GGATC 1 cut(s) 119
AoxI GGCC 2 cut(s) 183, 214
ApoI RAATTY 1 cut(s) 242
AseI ATTAAT 1 cut(s) 48
AsiGI ACCGGT 1 cut(s) 7
Asp700I GAANNNNTTC 1 cut(s) 78
AsuHPI GGTGA 1 cut(s) 170
BalI TGGCCA 1 cut(s) 216
BanII GRGCYC 1 cut(s) 552
BccI CCATC 1 cut(s) 47
BciT130I CCWGG 3 cut(s) 187, 213, 443
BfuAI ACCTGC 1 cut(s) 329
BlpI GCTNAGC 1 cut(s) 273
Bme1390I CCNGG 3 cut(s) 187, 213, 443
BmrFI CCNGG 3 cut(s) 187, 213, 443
BmsI GCATC 3 cut(s) 274, 424, 505
BplI GAGNNNNNCTC 2 cut(s) 534, 566
Bpu1102I GCTNAGC 1 cut(s) 273
BpuEI CTTGAG 1 cut(s) 344
BsaJI CCNNGG 1 cut(s) 409
BsaWI WCCGGW 2 cut(s) 7, 261
Bsc4I CCNNNNNNNGG 1 cut(s) 155
Bse118I RCCGGY 1 cut(s) 7
Bse1I ACTGG 1 cut(s) 494
BseBI CCWGG 3 cut(s) 187, 213, 443
BseDI CCNNGG 1 cut(s) 409
BseGI GGATG 1 cut(s) 121
BseLI CCNNNNNNNGG 1 cut(s) 155
BseMII CTCAG 2 cut(s) 264, 386
BseNI ACTGG 1 cut(s) 494
BseYI CCCAGC 1 cut(s) 545
BshFI GGCC 2 cut(s) 185, 216
BshTI ACCGGT 1 cut(s) 7
BsiSI CCGG 3 cut(s) 8, 102, 262
BslFI GGGAC 1 cut(s) 70
BslI CCNNNNNNNGG 1 cut(s) 155
BsmFI GGGAC 1 cut(s) 70
BsmI GAATGC 1 cut(s) 344
BsnI GGCC 2 cut(s) 185, 216
Bsp1286I GDGCHC 1 cut(s) 552
Bsp143I GATC 1 cut(s) 124
Bsp1720I GCTNAGC 1 cut(s) 273
BspANI GGCC 2 cut(s) 185, 216
BspCNI CTCAG 2 cut(s) 265, 385
BspMI ACCTGC 1 cut(s) 329
BspPI GGATC 1 cut(s) 119
BsrFI RCCGGY 1 cut(s) 7
BsrI ACTGG 1 cut(s) 494
BssAI RCCGGY 1 cut(s) 7
BssECI CCNNGG 1 cut(s) 409
BssMI GATC 1 cut(s) 124
BssT1I CCWWGG 1 cut(s) 409
Bst2UI CCWGG 3 cut(s) 187, 213, 443
Bst4CI ACNGT 1 cut(s) 456
Bst6I CTCTTC 1 cut(s) 213
BstC8I GCNNGC 1 cut(s) 427
BstDEI CTNAG 2 cut(s) 273, 372
BstF5I GGATG 1 cut(s) 121
BstKTI GATC 1 cut(s) 127
BstMBI GATC 1 cut(s) 124
BstNI CCWGG 3 cut(s) 187, 213, 443
BstNSI RCATGY 1 cut(s) 429
BstSCI CCNGG 3 cut(s) 185, 211, 441
BsuRI GGCC 2 cut(s) 185, 216
BtsCI GGATG 1 cut(s) 121
BtsI GCAGTG 3 cut(s) 360, 385, 436
BtsIMutI CAGTG 4 cut(s) 360, 385, 436, 487
BveI ACCTGC 1 cut(s) 329
Cac8I GCNNGC 1 cut(s) 427
Cfr10I RCCGGY 1 cut(s) 7
CsiI ACCWGGT 1 cut(s) 441
Csp6I GTAC 1 cut(s) 358
CspAI ACCGGT 1 cut(s) 7
CspCI CAANNNNNGTGG 2 cut(s) 162, 197
CviAII CATG 2 cut(s) 304, 426
CviJI RGCY 8 cut(s) 143, 185, 216, 272, 277, 545, 550, 569
CviKI_1 RGCY 8 cut(s) 143, 185, 216, 272, 277, 545, 550, 569
CviQI GTAC 1 cut(s) 358
DdeI CTNAG 2 cut(s) 273, 372
DpnI GATC 1 cut(s) 126
DpnII GATC 1 cut(s) 124
EaeI YGGCCR 1 cut(s) 214
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
Eco130I CCWWGG 1 cut(s) 409
Eco24I GRGCYC 1 cut(s) 552
Eco57I CTGAAG 1 cut(s) 150
EcoRII CCWGG 3 cut(s) 185, 211, 441
EcoT14I CCWWGG 1 cut(s) 409
EcoT38I GRGCYC 1 cut(s) 552
ErhI CCWWGG 1 cut(s) 409
FaeI CATG 2 cut(s) 307, 429
FaiI YATR 9 cut(s) 63, 89, 229, 305, 368, 427, 476, 533, 537
FaqI GGGAC 1 cut(s) 70
FatI CATG 2 cut(s) 303, 425
FblI GTMKAC 1 cut(s) 203
FokI GGATG 1 cut(s) 128
FriOI GRGCYC 1 cut(s) 552
GsaI CCCAGC 1 cut(s) 549
HaeIII GGCC 2 cut(s) 185, 216
HapII CCGG 3 cut(s) 8, 102, 262
Hin1II CATG 2 cut(s) 307, 429
HincII GTYRAC 3 cut(s) 204, 298, 420
HindII GTYRAC 3 cut(s) 204, 298, 420
HinfI GANTC 3 cut(s) 161, 205, 493
HpaI GTTAAC 1 cut(s) 420
HpaII CCGG 3 cut(s) 8, 102, 262
HphI GGTGA 1 cut(s) 170
Hpy166II GTNNAC 5 cut(s) 204, 298, 360, 420, 487
Hpy188I TCNGA 3 cut(s) 124, 166, 332
Hpy188III TCNNGA 2 cut(s) 128, 392
Hpy8I GTNNAC 5 cut(s) 204, 298, 360, 420, 487
HpyCH4III ACNGT 1 cut(s) 456
HpyCH4IV ACGT 1 cut(s) 300
HpyCH4V TGCA 4 cut(s) 239, 344, 429, 437
HpyF3I CTNAG 2 cut(s) 273, 372
HpySE526I ACGT 1 cut(s) 300
Hsp92II CATG 2 cut(s) 307, 429
KspAI GTTAAC 1 cut(s) 420
Kzo9I GATC 1 cut(s) 124
LweI GCATC 3 cut(s) 274, 424, 505
MabI ACCWGGT 1 cut(s) 441
MaeII ACGT 1 cut(s) 300
MalI GATC 1 cut(s) 126
MboI GATC 1 cut(s) 124
MboII GAAGA 5 cut(s) 200, 301, 397, 457, 490
MfeI CAATTG 1 cut(s) 291
MhlI GDGCHC 1 cut(s) 552
MlsI TGGCCA 1 cut(s) 216
MluCI AATT 3 cut(s) 150, 242, 291
MluNI TGGCCA 1 cut(s) 216
MlyI GAGTC 1 cut(s) 199
MnlI CCTC 3 cut(s) 163, 550, 559
Mox20I TGGCCA 1 cut(s) 216
MroXI GAANNNNTTC 1 cut(s) 78
MscI TGGCCA 1 cut(s) 216
MseI TTAA 3 cut(s) 48, 419, 574
Msp20I TGGCCA 1 cut(s) 216
MspI CCGG 3 cut(s) 8, 102, 262
MspR9I CCNGG 3 cut(s) 187, 213, 443
MunI CAATTG 1 cut(s) 291
Mva1269I GAATGC 1 cut(s) 344
MvaI CCWGG 3 cut(s) 187, 213, 443
NdeII GATC 1 cut(s) 124
NlaIII CATG 2 cut(s) 307, 429
NspI RCATGY 1 cut(s) 429
PaeI GCATGC 1 cut(s) 429
PaqCI CACCTGC 1 cut(s) 329
PctI GAATGC 1 cut(s) 344
PdmI GAANNNNTTC 1 cut(s) 78
PfeI GAWTC 2 cut(s) 161, 493
PflMI CCANNNNNTGG 1 cut(s) 155
PinAI ACCGGT 1 cut(s) 7
PleI GAGTC 1 cut(s) 199
PpsI GAGTC 1 cut(s) 199
PshBI ATTAAT 1 cut(s) 48
Psp6I CCWGG 3 cut(s) 185, 211, 441
PspFI CCCAGC 1 cut(s) 545
PspGI CCWGG 3 cut(s) 185, 211, 441
RsaI GTAC 1 cut(s) 359
RsaNI GTAC 1 cut(s) 358
SalI GTCGAC 1 cut(s) 202
SaqAI TTAA 3 cut(s) 48, 419, 574
Sau3AI GATC 1 cut(s) 124
SchI GAGTC 1 cut(s) 199
ScrFI CCNGG 3 cut(s) 187, 213, 443
SduI GDGCHC 1 cut(s) 552
SetI ASST 6 cut(s) 251, 274, 303, 343, 444, 547
SexAI ACCWGGT 1 cut(s) 441
SfaNI GCATC 3 cut(s) 274, 424, 505
SmlI CTYRAG 1 cut(s) 323
SmoI CTYRAG 1 cut(s) 323
SphI GCATGC 1 cut(s) 429
Sse9I AATT 3 cut(s) 150, 242, 291
StyD4I CCNGG 3 cut(s) 185, 211, 441
StyI CCWWGG 1 cut(s) 409
TaaI ACNGT 1 cut(s) 456
TaiI ACGT 1 cut(s) 303
TaqI TCGA 3 cut(s) 203, 528, 541
TasI AATT 3 cut(s) 150, 242, 291
TatI WGTACW 1 cut(s) 357
TfiI GAWTC 2 cut(s) 161, 493
Tru1I TTAA 3 cut(s) 48, 419, 574
Tru9I TTAA 3 cut(s) 48, 419, 574
TscAI CASTG 4 cut(s) 367, 385, 436, 494
TspDTI ATGAA 2 cut(s) 17, 491
TspRI CASTG 4 cut(s) 367, 385, 436, 494
Van91I CCANNNNNTGG 1 cut(s) 155
VspI ATTAAT 1 cut(s) 48
XapI RAATTY 1 cut(s) 242
XceI RCATGY 1 cut(s) 429
XmiI GTMKAC 1 cut(s) 203
XmnI GAANNNNTTC 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.