RchiOBHm_Chr4g0406571

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
28370748 .. 28372808
2061 bp
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UTR
Exon/CDS
Intron
PRQ37791

Sequence Viewer

Length: 165 bp
ATGCCTTTGAAAGCTGATGGTTCTGTTTGGGGAGCTCTGCTTAGTGCTTGCAAAATTCATGAGAATGAGACAATGATTGAGAGAATCAGACAAGGACTCCCAAATAATGCAGGAGTTAGCATTGGAACTTATGCTCTGTTATCAAATGCTTTTGCGTTGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

54

Amino Acids

5.7

Weight (kDa)

6.52

Isoelectric Point (pI)

38.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 54
AgsI TTSAA 1 cut(s) 10
AluBI AGCT 2 cut(s) 14, 35
AluI AGCT 2 cut(s) 14, 35
Alw21I GWGCWC 1 cut(s) 37
Alw26I GTCTC 1 cut(s) 62
ApoI RAATTY 1 cut(s) 54
BanII GRGCYC 1 cut(s) 37
Bbv12I GWGCWC 1 cut(s) 37
BccI CCATC 1 cut(s) 11
BcoDI GTCTC 1 cut(s) 62
BsaXI ACNNNNNCTCC 2 cut(s) 81, 111
BsiHKAI GWGCWC 1 cut(s) 37
BsmAI GTCTC 1 cut(s) 62
Bsp1286I GDGCHC 1 cut(s) 37
BspHI TCATGA 1 cut(s) 58
BstC8I GCNNGC 1 cut(s) 49
BstDEI CTNAG 1 cut(s) 41
BstMAI GTCTC 1 cut(s) 62
Cac8I GCNNGC 1 cut(s) 49
CciI TCATGA 1 cut(s) 58
CviAII CATG 1 cut(s) 59
CviJI RGCY 2 cut(s) 14, 35
CviKI_1 RGCY 2 cut(s) 14, 35
DdeI CTNAG 1 cut(s) 41
Ecl136II GAGCTC 1 cut(s) 35
Eco24I GRGCYC 1 cut(s) 37
Eco53kI GAGCTC 1 cut(s) 35
EcoICRI GAGCTC 1 cut(s) 35
EcoT38I GRGCYC 1 cut(s) 37
FaeI CATG 1 cut(s) 62
FaiI YATR 2 cut(s) 60, 132
FatI CATG 1 cut(s) 58
FriOI GRGCYC 1 cut(s) 37
Hin1II CATG 1 cut(s) 62
HinfI GANTC 2 cut(s) 84, 96
Hpy188I TCNGA 1 cut(s) 89
Hpy188III TCNNGA 1 cut(s) 59
HpyCH4V TGCA 2 cut(s) 51, 110
HpyF3I CTNAG 1 cut(s) 41
Hsp92II CATG 1 cut(s) 62
LmnI GCTCC 1 cut(s) 32
LpnPI CCDG 1 cut(s) 96
MhlI GDGCHC 1 cut(s) 37
MluCI AATT 1 cut(s) 54
MlyI GAGTC 1 cut(s) 90
MslI CAYNNNNRTG 1 cut(s) 63
NlaIII CATG 1 cut(s) 62
PagI TCATGA 1 cut(s) 58
PfeI GAWTC 1 cut(s) 84
PleI GAGTC 1 cut(s) 90
PpsI GAGTC 1 cut(s) 90
Psp124BI GAGCTC 1 cut(s) 37
RseI CAYNNNNRTG 1 cut(s) 63
SacI GAGCTC 1 cut(s) 37
SchI GAGTC 1 cut(s) 90
SduI GDGCHC 1 cut(s) 37
SetI ASST 2 cut(s) 16, 37
SgeI CNNG 4 cut(s) 60, 71, 104, 123
SmiMI CAYNNNNRTG 1 cut(s) 63
Sse9I AATT 1 cut(s) 54
SstI GAGCTC 1 cut(s) 37
TasI AATT 1 cut(s) 54
TfiI GAWTC 1 cut(s) 84
TspDTI ATGAA 1 cut(s) 47
XapI RAATTY 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.