RLG00000008766

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001684
Physical Location & Seq
Reverse (-)
36712130 .. 36714466
2337 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008766

Sequence Viewer

Length: 654 bp
ATGTCCATGGACGCAGAACCCAATATTACTACTCTTGTGACTGTTTTGTCTTCGTGTTCTAGTTTAAGAGCTTTCAAGTTAGGTAAAGCTGTTCATGGCCATTGTTTGAGGAACATACACAAGCGTAATATGATTTTGGACAATGCAGTGTTGGATTTCTATCTGAGATGTGGTTCTTTGGTGGCTGCAAGATACTTGTTTGTCATTATGCCCAAGAGAGATTTTGTTTCTTTGAGTAGCATGGTGGGTGGTTATGCACATAGAGGTTTATGTGAGGAGGCAATAAGACTTTTCCAACAACTGCTGCTGGGCTGGGAAGTTGAGCCGAATGAGGCTACCATTGTCAATGTATTGTCAGCATGTTCTTCTGTTTGTTCCTTGAGTTCAAGCCAGCAGGTGCATTTCTATATCAGTACTCAGCCAGATCTCATGGTGAATAGCAATGTGGGAAATGCCTTGATCAACATGTATGTTAGGAGTGGACATTTGGGTATGGCTATTTCAGTTTTTAAGGCCTTGGAGTGCAAAGATATCATTTTATGGAGTACCATAATAAGCGGGTCGAGGGGAAGAGTCAAAAGGCAGAAATTTGCTAATGCTGAGGAGAATTTCGAGAGAATCAAGTACAAGGTCAAAAGGAGAAATGAAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

218

Amino Acids

24.28

Weight (kDa)

9.35

Isoelectric Point (pI)

55.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 385
AasI GACNNNNNNGTC 1 cut(s) 46
Acc36I ACCTGC 1 cut(s) 385
AciI CCGC 1 cut(s) 558
AcoI YGGCCR 1 cut(s) 97
AcsI RAATTY 2 cut(s) 587, 607
AfaI GTAC 3 cut(s) 415, 547, 626
AflIII ACRYGT 1 cut(s) 465
AgsI TTSAA 2 cut(s) 76, 387
AluBI AGCT 2 cut(s) 71, 89
AluI AGCT 2 cut(s) 71, 89
AoxI GGCC 2 cut(s) 97, 513
ApeKI GCWGC 2 cut(s) 185, 304
ApoI RAATTY 2 cut(s) 587, 607
AsuHPI GGTGA 1 cut(s) 445
BalI TGGCCA 1 cut(s) 99
BbsI GAAGAC 1 cut(s) 42
BbvCI CCTCAGC 1 cut(s) 600
BbvI GCAGC 2 cut(s) 172, 291
BclI TGATCA 1 cut(s) 459
BfaI CTAG 1 cut(s) 60
BfuAI ACCTGC 1 cut(s) 385
BglII AGATCT 1 cut(s) 424
BisI GCNGC 2 cut(s) 186, 305
BlsI GCNGC 2 cut(s) 187, 306
BmcAI AGTACT 1 cut(s) 415
BpiI GAAGAC 1 cut(s) 42
Bpu10I CCTNAGC 1 cut(s) 600
BpuEI CTTGAG 1 cut(s) 400
BsaBI GATNNNNATC 1 cut(s) 159
BsaJI CCNNGG 2 cut(s) 6, 516
Bse3DI GCAATG 1 cut(s) 448
Bse8I GATNNNNATC 1 cut(s) 159
BseDI CCNNGG 2 cut(s) 6, 516
BseJI GATNNNNATC 1 cut(s) 159
BseMI GCAATG 1 cut(s) 448
BseMII CTCAG 3 cut(s) 155, 431, 591
BseRI GAGGAG 2 cut(s) 290, 617
BseXI GCAGC 2 cut(s) 172, 291
BseYI CCCAGC 2 cut(s) 307, 312
BshFI GGCC 2 cut(s) 99, 515
BsnI GGCC 2 cut(s) 99, 515
Bsp143I GATC 2 cut(s) 424, 459
Bsp19I CCATGG 1 cut(s) 6
BspACI CCGC 1 cut(s) 558
BspANI GGCC 2 cut(s) 99, 515
BspCNI CTCAG 3 cut(s) 156, 430, 592
BspMI ACCTGC 1 cut(s) 385
BsrDI GCAATG 1 cut(s) 448
BssECI CCNNGG 2 cut(s) 6, 516
BssMI GATC 2 cut(s) 424, 459
BssT1I CCWWGG 2 cut(s) 6, 516
Bst4CI ACNGT 1 cut(s) 43
Bst6I CTCTTC 1 cut(s) 565
BstC8I GCNNGC 1 cut(s) 392
BstDEI CTNAG 3 cut(s) 164, 417, 600
BstDSI CCRYGG 1 cut(s) 6
BstKTI GATC 2 cut(s) 427, 462
BstMBI GATC 2 cut(s) 424, 459
BstNSI RCATGY 2 cut(s) 363, 469
BstV1I GCAGC 2 cut(s) 172, 291
BstV2I GAAGAC 1 cut(s) 42
BstX2I RGATCY 1 cut(s) 424
BstYI RGATCY 1 cut(s) 424
BsuRI GGCC 2 cut(s) 99, 515
BtgI CCRYGG 1 cut(s) 6
BtsI GCAGTG 1 cut(s) 153
BtsIMutI CAGTG 1 cut(s) 153
BveI ACCTGC 1 cut(s) 385
Cac8I GCNNGC 1 cut(s) 392
CseI GACGC 1 cut(s) 20
Csp6I GTAC 3 cut(s) 414, 546, 625
CviAII CATG 6 cut(s) 7, 95, 241, 360, 430, 466
CviQI GTAC 3 cut(s) 414, 546, 625
DdeI CTNAG 3 cut(s) 164, 417, 600
DpnI GATC 2 cut(s) 426, 461
DpnII GATC 2 cut(s) 424, 459
DrdI GACNNNNNNGTC 1 cut(s) 46
DseDI GACNNNNNNGTC 1 cut(s) 46
EaeI YGGCCR 1 cut(s) 97
Eam1104I CTCTTC 1 cut(s) 565
EarI CTCTTC 1 cut(s) 565
Eco130I CCWWGG 2 cut(s) 6, 516
Eco147I AGGCCT 1 cut(s) 515
Eco32I GATATC 1 cut(s) 532
EcoRV GATATC 1 cut(s) 532
EcoT14I CCWWGG 2 cut(s) 6, 516
ErhI CCWWGG 2 cut(s) 6, 516
FaeI CATG 6 cut(s) 10, 98, 244, 363, 433, 469
FatI CATG 6 cut(s) 6, 94, 240, 359, 429, 465
FauI CCCGC 1 cut(s) 551
FbaI TGATCA 1 cut(s) 459
Fnu4HI GCNGC 2 cut(s) 186, 305
Fsp4HI GCNGC 2 cut(s) 186, 305
FspBI CTAG 1 cut(s) 60
GluI GCNGC 2 cut(s) 186, 305
GsaI CCCAGC 2 cut(s) 311, 316
HaeIII GGCC 2 cut(s) 99, 515
HgaI GACGC 1 cut(s) 20
Hin1II CATG 6 cut(s) 10, 98, 244, 363, 433, 469
HinfI GANTC 2 cut(s) 573, 618
HphI GGTGA 1 cut(s) 445
Hpy166II GTNNAC 1 cut(s) 482
Hpy188I TCNGA 1 cut(s) 165
Hpy188III TCNNGA 1 cut(s) 613
Hpy8I GTNNAC 1 cut(s) 482
HpyAV CCTTC 1 cut(s) 641
HpyCH4III ACNGT 1 cut(s) 43
HpyCH4V TGCA 5 cut(s) 146, 188, 257, 400, 525
HpyF3I CTNAG 3 cut(s) 164, 417, 600
Hsp92II CATG 6 cut(s) 10, 98, 244, 363, 433, 469
Ksp22I TGATCA 1 cut(s) 459
Kzo9I GATC 2 cut(s) 424, 459
LpnPI CCDG 5 cut(s) 293, 298, 380, 404, 435
Lsp1109I GCAGC 2 cut(s) 172, 291
MaeI CTAG 1 cut(s) 60
MaeIII GTNAC 1 cut(s) 37
MalI GATC 2 cut(s) 426, 461
MboI GATC 2 cut(s) 424, 459
MboII GAAGA 3 cut(s) 42, 357, 582
MflI RGATCY 1 cut(s) 424
MlsI TGGCCA 1 cut(s) 99
MluCI AATT 2 cut(s) 587, 607
MluNI TGGCCA 1 cut(s) 99
MlyI GAGTC 1 cut(s) 582
MmeI TCCRAC 2 cut(s) 132, 319
MnlI CCTC 7 cut(s) 102, 257, 268, 271, 325, 558, 595
Mox20I TGGCCA 1 cut(s) 99
MscI TGGCCA 1 cut(s) 99
MseI TTAA 2 cut(s) 65, 510
Msp20I TGGCCA 1 cut(s) 99
NcoI CCATGG 1 cut(s) 6
NdeII GATC 2 cut(s) 424, 459
NlaIII CATG 6 cut(s) 10, 98, 244, 363, 433, 469
NmuCI GTSAC 1 cut(s) 37
NspI RCATGY 2 cut(s) 363, 469
PaqCI CACCTGC 1 cut(s) 385
PceI AGGCCT 1 cut(s) 515
PciI ACATGT 1 cut(s) 465
PfeI GAWTC 1 cut(s) 618
PkrI GCNGC 2 cut(s) 187, 306
PleI GAGTC 1 cut(s) 581
PpsI GAGTC 1 cut(s) 581
PscI ACATGT 1 cut(s) 465
PspFI CCCAGC 2 cut(s) 307, 312
PsuI RGATCY 1 cut(s) 424
RsaI GTAC 3 cut(s) 415, 547, 626
RsaNI GTAC 3 cut(s) 414, 546, 625
SaqAI TTAA 2 cut(s) 65, 510
SatI GCNGC 2 cut(s) 186, 305
Sau3AI GATC 2 cut(s) 424, 459
ScaI AGTACT 1 cut(s) 415
SchI GAGTC 1 cut(s) 582
SetI ASST 6 cut(s) 73, 85, 91, 268, 399, 633
SmlI CTYRAG 1 cut(s) 379
SmoI CTYRAG 1 cut(s) 379
Sse9I AATT 2 cut(s) 587, 607
SseBI AGGCCT 1 cut(s) 515
SsiI CCGC 1 cut(s) 558
SspI AATATT 1 cut(s) 25
SspMI CTAG 1 cut(s) 60
StuI AGGCCT 1 cut(s) 515
StyI CCWWGG 2 cut(s) 6, 516
TaaI ACNGT 1 cut(s) 43
TaqI TCGA 2 cut(s) 563, 612
TasI AATT 2 cut(s) 587, 607
TatI WGTACW 2 cut(s) 413, 624
TfiI GAWTC 1 cut(s) 618
Tru1I TTAA 2 cut(s) 65, 510
Tru9I TTAA 2 cut(s) 65, 510
TscAI CASTG 1 cut(s) 153
TseFI GTSAC 1 cut(s) 37
TseI GCWGC 2 cut(s) 185, 304
Tsp45I GTSAC 1 cut(s) 37
TspDTI ATGAA 1 cut(s) 83
TspRI CASTG 1 cut(s) 153
XapI RAATTY 2 cut(s) 587, 607
XceI RCATGY 2 cut(s) 363, 469
XspI CTAG 1 cut(s) 60
ZrmI AGTACT 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.