Prupe.5G045600_v2.0.a1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0001684
Physical Location & Seq
Forward (+)
4961882 .. 4963002
1121 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G045600.1

Sequence Viewer

Length: 858 bp
ATGGAACATAAATATGGTCAAGATGTTGTTTCCTGGACTTGGATGATTTCGGGTCCTGCTAAGTGTGGCTTTGTAGAGGAAGCAATTCTTAAGTTTATGTCCATGGATGTAGAGCGTAATTATTCTACTCTTGTCATTGTTATGTCTGCTTGTTTTAGTTTAGGAGCTTTCAAGTTTGGTAAAGTTGTTCATGGCTATTGCCTGAGGAATTTACGTGGAAGGAATATTATTTTGGACAATGCAGGATTGGATTTCTATTTGAGATGTGGGTCTTTGGTGAGTGCCAGCGTGTTCTTCGATTGGGGCACTGAGTTTAGGCCAGTGGATTCATCCCTATGTAAGTACGTGGCGGATCTCATGGTGAATGGCAATGTGGGAAATGCCTTACTCAACATGTATGACAAGTGTGGTGAAGTACGTATGGCAATTTCGGTGTTTAAAGGCCTGGATTCGAGCAGTCACACAGGCCTAGTTGATCAAGGGTTGATATTCTTTAATGCTATGAAAGATGTTTACGGGATTGTTCCTAAAACGCAGCATTATGCCTGTTGGGTTGATATGTATGGCCGAGCAGGGTTCTTCGAAGAAGCAGAGGGTTTCATTAAAGAAATGCCAACAAAAGCAGATGGCTCTGTTTGGGGAGCGCTGCTTAATGCTTGCAGGATTCATGGGAATGATAAGCTGTTTGAGAGGATCAGGGATGGTCTCCTCAAGAGTAGAGGATTTAGCACTGGAACTTATGCTCTATTGTCGAATATGTATGCTAATCACGATAGATGGGATGATGCTAATAAGGTTCGTGACGAAATGAGATGGATGAGGCTGAAGAAACTGCCTGGATGTAGTCATAGAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

286

Amino Acids

32.13

Weight (kDa)

8.31

Isoelectric Point (pI)

36.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 350
AclWI GGATC 2 cut(s) 360, 701
AcoI YGGCCR 1 cut(s) 565
AcsI RAATTY 1 cut(s) 208
AcuI CTGAAG 1 cut(s) 845
AfaI GTAC 2 cut(s) 344, 417
AfeI AGCGCT 1 cut(s) 645
AfiI CCNNNNNNNGG 1 cut(s) 39
AflII CTTAAG 1 cut(s) 89
AflIII ACRYGT 1 cut(s) 393
AgsI TTSAA 1 cut(s) 172
AjnI CCWGG 3 cut(s) 32, 444, 835
AjuI GAANNNNNNNTTGG 2 cut(s) 215, 247
AluBI AGCT 2 cut(s) 167, 682
AluI AGCT 2 cut(s) 167, 682
Alw26I GTCTC 1 cut(s) 710
AlwI GGATC 2 cut(s) 360, 701
Aor51HI AGCGCT 1 cut(s) 645
AoxI GGCC 4 cut(s) 317, 442, 466, 565
ApeKI GCWGC 2 cut(s) 535, 646
ApoI RAATTY 1 cut(s) 208
Asp700I GAANNNNTTC 1 cut(s) 84
AspLEI GCGC 1 cut(s) 646
AspS9I GGNCC 1 cut(s) 53
AsuHPI GGTGA 3 cut(s) 289, 373, 422
AsuII TTCGAA 1 cut(s) 582
AvaII GGWCC 1 cut(s) 53
AxyI CCTNAGG 1 cut(s) 203
BaeGI GKGCMC 1 cut(s) 308
BbvI GCAGC 2 cut(s) 547, 633
BccI CCATC 4 cut(s) 620, 695, 771, 807
BciT130I CCWGG 3 cut(s) 34, 446, 837
BclI TGATCA 1 cut(s) 475
BcoDI GTCTC 1 cut(s) 710
BfaI CTAG 1 cut(s) 470
BfoI RGCGCY 1 cut(s) 647
BfrI CTTAAG 1 cut(s) 89
BisI GCNGC 2 cut(s) 536, 647
BlsI GCNGC 2 cut(s) 537, 648
Bme1390I CCNGG 3 cut(s) 34, 446, 837
Bme18I GGWCC 1 cut(s) 53
BmgT120I GGNCC 1 cut(s) 53
BmiI GGNNCC 1 cut(s) 54
BmrFI CCNGG 3 cut(s) 34, 446, 837
BmsI GCATC 1 cut(s) 775
Bpu14I TTCGAA 1 cut(s) 582
BpuEI CTTGAG 1 cut(s) 695
BsaAI YACGTR 3 cut(s) 215, 346, 419
BsaI GGTCTC 1 cut(s) 710
BsaJI CCNNGG 1 cut(s) 102
Bsc4I CCNNNNNNNGG 1 cut(s) 39
Bse1I ACTGG 2 cut(s) 320, 736
Bse21I CCTNAGG 1 cut(s) 203
Bse3DI GCAATG 1 cut(s) 376
BseBI CCWGG 3 cut(s) 34, 446, 837
BseDI CCNNGG 1 cut(s) 102
BseGI GGATG 7 cut(s) 48, 112, 329, 706, 787, 822, 845
BseLI CCNNNNNNNGG 1 cut(s) 39
BseMI GCAATG 1 cut(s) 376
BseMII CTCAG 2 cut(s) 194, 300
BseNI ACTGG 2 cut(s) 320, 736
BseRI GAGGAG 1 cut(s) 698
BseSI GKGCMC 1 cut(s) 308
BseXI GCAGC 2 cut(s) 547, 633
BshFI GGCC 4 cut(s) 319, 444, 468, 567
BslI CCNNNNNNNGG 1 cut(s) 39
BsmAI GTCTC 1 cut(s) 710
BsnI GGCC 4 cut(s) 319, 444, 468, 567
Bso31I GGTCTC 1 cut(s) 710
Bsp119I TTCGAA 1 cut(s) 582
Bsp1286I GDGCHC 1 cut(s) 308
Bsp143I GATC 3 cut(s) 352, 475, 693
Bsp19I CCATGG 1 cut(s) 102
BspACI CCGC 1 cut(s) 350
BspANI GGCC 4 cut(s) 319, 444, 468, 567
BspCNI CTCAG 2 cut(s) 195, 301
BspLI GGNNCC 1 cut(s) 54
BspPI GGATC 2 cut(s) 360, 701
BspT104I TTCGAA 1 cut(s) 582
BspTI CTTAAG 1 cut(s) 89
BspTNI GGTCTC 1 cut(s) 710
BsrDI GCAATG 1 cut(s) 376
BsrI ACTGG 2 cut(s) 320, 736
BssECI CCNNGG 1 cut(s) 102
BssMI GATC 3 cut(s) 352, 475, 693
BssT1I CCWWGG 1 cut(s) 102
Bst2UI CCWGG 3 cut(s) 34, 446, 837
BstAFI CTTAAG 1 cut(s) 89
BstBAI YACGTR 3 cut(s) 215, 346, 419
BstBI TTCGAA 1 cut(s) 582
BstC8I GCNNGC 2 cut(s) 286, 658
BstDEI CTNAG 3 cut(s) 60, 203, 309
BstDSI CCRYGG 1 cut(s) 102
BstF5I GGATG 7 cut(s) 48, 112, 329, 706, 787, 822, 845
BstH2I RGCGCY 1 cut(s) 647
BstHHI GCGC 1 cut(s) 646
BstKTI GATC 3 cut(s) 355, 478, 696
BstMAI GTCTC 1 cut(s) 710
BstMBI GATC 3 cut(s) 352, 475, 693
BstNI CCWGG 3 cut(s) 34, 446, 837
BstNSI RCATGY 1 cut(s) 397
BstSCI CCNGG 3 cut(s) 32, 444, 835
BstSLI GKGCMC 1 cut(s) 308
BstSNI TACGTA 1 cut(s) 419
BstV1I GCAGC 2 cut(s) 547, 633
BstX2I RGATCY 1 cut(s) 352
BstYI RGATCY 1 cut(s) 352
Bsu36I CCTNAGG 1 cut(s) 203
BsuRI GGCC 4 cut(s) 319, 444, 468, 567
BtgI CCRYGG 1 cut(s) 102
BtsCI GGATG 7 cut(s) 48, 112, 329, 706, 787, 822, 845
BtsIMutI CAGTG 3 cut(s) 306, 327, 729
Cac8I GCNNGC 2 cut(s) 286, 658
CfoI GCGC 1 cut(s) 646
Cfr13I GGNCC 1 cut(s) 53
Csp6I GTAC 2 cut(s) 343, 416
CviAII CATG 5 cut(s) 103, 191, 358, 394, 668
CviQI GTAC 2 cut(s) 343, 416
DdeI CTNAG 3 cut(s) 60, 203, 309
DpnI GATC 3 cut(s) 354, 477, 695
DpnII GATC 3 cut(s) 352, 475, 693
DraI TTTAAA 1 cut(s) 439
EaeI YGGCCR 1 cut(s) 565
EciI GGCGGA 1 cut(s) 365
Eco105I TACGTA 1 cut(s) 419
Eco130I CCWWGG 1 cut(s) 102
Eco147I AGGCCT 2 cut(s) 444, 468
Eco31I GGTCTC 1 cut(s) 710
Eco47I GGWCC 1 cut(s) 53
Eco47III AGCGCT 1 cut(s) 645
Eco57I CTGAAG 1 cut(s) 845
Eco81I CCTNAGG 1 cut(s) 203
EcoO109I RGGNCCY 1 cut(s) 53
EcoRII CCWGG 3 cut(s) 32, 444, 835
EcoT14I CCWWGG 1 cut(s) 102
ErhI CCWWGG 1 cut(s) 102
FaeI CATG 5 cut(s) 106, 194, 361, 397, 671
FalI AAGNNNNNCTT 4 cut(s) 53, 85, 72, 104
FatI CATG 5 cut(s) 102, 190, 357, 393, 667
FbaI TGATCA 1 cut(s) 475
Fnu4HI GCNGC 2 cut(s) 536, 647
FokI GGATG 7 cut(s) 55, 119, 316, 713, 794, 829, 852
Fsp4HI GCNGC 2 cut(s) 536, 647
FspBI CTAG 1 cut(s) 470
GlaI GCGC 1 cut(s) 645
GluI GCNGC 2 cut(s) 536, 647
HaeII RGCGCY 1 cut(s) 647
HaeIII GGCC 4 cut(s) 319, 444, 468, 567
HhaI GCGC 1 cut(s) 646
Hin1II CATG 5 cut(s) 106, 194, 361, 397, 671
Hin6I GCGC 1 cut(s) 644
HinP1I GCGC 1 cut(s) 644
HinfI GANTC 3 cut(s) 326, 449, 664
HphI GGTGA 3 cut(s) 289, 373, 422
Hpy166II GTNNAC 1 cut(s) 514
Hpy188III TCNNGA 4 cut(s) 20, 712, 770, 800
Hpy8I GTNNAC 1 cut(s) 514
HpyAV CCTTC 1 cut(s) 213
HpyCH4IV ACGT 3 cut(s) 214, 345, 418
HpyCH4V TGCA 2 cut(s) 242, 660
HpyF3I CTNAG 3 cut(s) 60, 203, 309
HpySE526I ACGT 3 cut(s) 214, 345, 418
Hsp92II CATG 5 cut(s) 106, 194, 361, 397, 671
HspAI GCGC 1 cut(s) 644
Ksp22I TGATCA 1 cut(s) 475
Kzo9I GATC 3 cut(s) 352, 475, 693
LmnI GCTCC 2 cut(s) 164, 641
Lsp1109I GCAGC 2 cut(s) 547, 633
LweI GCATC 1 cut(s) 775
MaeI CTAG 1 cut(s) 470
MaeII ACGT 3 cut(s) 214, 345, 418
MaeIII GTNAC 2 cut(s) 458, 800
MalI GATC 3 cut(s) 354, 477, 695
MboI GATC 3 cut(s) 352, 475, 693
MboII GAAGA 4 cut(s) 286, 571, 596, 838
MflI RGATCY 1 cut(s) 352
MhlI GDGCHC 1 cut(s) 308
MluCI AATT 4 cut(s) 84, 118, 208, 426
MnlI CCTC 8 cut(s) 70, 198, 586, 684, 713, 719, 813, 845
MroXI GAANNNNTTC 1 cut(s) 84
MseI TTAA 5 cut(s) 90, 438, 495, 603, 651
MslI CAYNNNNRTG 4 cut(s) 12, 140, 334, 672
MspCI CTTAAG 1 cut(s) 89
MspR9I CCNGG 3 cut(s) 34, 446, 837
MvaI CCWGG 3 cut(s) 34, 446, 837
NcoI CCATGG 1 cut(s) 102
NdeII GATC 3 cut(s) 352, 475, 693
NlaIII CATG 5 cut(s) 106, 194, 361, 397, 671
NlaIV GGNNCC 1 cut(s) 54
NmeAIII GCCGAG 1 cut(s) 593
NmuCI GTSAC 2 cut(s) 458, 800
NspI RCATGY 1 cut(s) 397
NspV TTCGAA 1 cut(s) 582
PceI AGGCCT 2 cut(s) 444, 468
PciI ACATGT 1 cut(s) 393
PdmI GAANNNNTTC 1 cut(s) 84
PfeI GAWTC 3 cut(s) 326, 449, 664
PfoI TCCNGGA 1 cut(s) 32
PkrI GCNGC 2 cut(s) 537, 648
Ppu21I YACGTR 3 cut(s) 215, 346, 419
PpuMI RGGWCCY 1 cut(s) 53
PscI ACATGT 1 cut(s) 393
Psp5II RGGWCCY 1 cut(s) 53
Psp6I CCWGG 3 cut(s) 32, 444, 835
PspGI CCWGG 3 cut(s) 32, 444, 835
PspN4I GGNNCC 1 cut(s) 54
PspPI GGNCC 1 cut(s) 53
PspPPI RGGWCCY 1 cut(s) 53
PsuI RGATCY 1 cut(s) 352
RsaI GTAC 2 cut(s) 344, 417
RsaNI GTAC 2 cut(s) 343, 416
RseI CAYNNNNRTG 4 cut(s) 12, 140, 334, 672
SaqAI TTAA 5 cut(s) 90, 438, 495, 603, 651
SatI GCNGC 2 cut(s) 536, 647
Sau3AI GATC 3 cut(s) 352, 475, 693
Sau96I GGNCC 1 cut(s) 53
ScrFI CCNGG 3 cut(s) 34, 446, 837
SduI GDGCHC 1 cut(s) 308
SetI ASST 7 cut(s) 169, 217, 348, 421, 684, 798, 856
SfaNI GCATC 1 cut(s) 775
SfuI TTCGAA 1 cut(s) 582
SinI GGWCC 1 cut(s) 53
SmiMI CAYNNNNRTG 4 cut(s) 12, 140, 334, 672
SmlI CTYRAG 2 cut(s) 89, 710
SmoI CTYRAG 2 cut(s) 89, 710
SnaBI TACGTA 1 cut(s) 419
Sse9I AATT 4 cut(s) 84, 118, 208, 426
SseBI AGGCCT 2 cut(s) 444, 468
SsiI CCGC 1 cut(s) 350
SspI AATATT 1 cut(s) 226
SspMI CTAG 1 cut(s) 470
StuI AGGCCT 2 cut(s) 444, 468
StyD4I CCNGG 3 cut(s) 32, 444, 835
StyI CCWWGG 1 cut(s) 102
TaiI ACGT 3 cut(s) 217, 348, 421
TaqI TCGA 4 cut(s) 297, 452, 582, 752
TasI AATT 4 cut(s) 84, 118, 208, 426
TfiI GAWTC 3 cut(s) 326, 449, 664
Tru1I TTAA 5 cut(s) 90, 438, 495, 603, 651
Tru9I TTAA 5 cut(s) 90, 438, 495, 603, 651
TscAI CASTG 3 cut(s) 313, 327, 736
TseFI GTSAC 2 cut(s) 458, 800
TseI GCWGC 2 cut(s) 535, 646
Tsp45I GTSAC 2 cut(s) 458, 800
TspDTI ATGAA 5 cut(s) 179, 318, 518, 589, 656
TspRI CASTG 3 cut(s) 313, 327, 736
Vha464I CTTAAG 1 cut(s) 89
VpaK11BI GGWCC 1 cut(s) 53
XapI RAATTY 1 cut(s) 208
XceI RCATGY 1 cut(s) 397
XmnI GAANNNNTTC 1 cut(s) 84
XspI CTAG 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.