Prupe.4G247500_v2.0.a1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0001684
Physical Location & Seq
Reverse (-)
16466789 .. 16468306
1518 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G247500.1

Sequence Viewer

Length: 1518 bp
ATGAGACAACAACTAAAGCAAATCCATGCCCTACTCATCAAAAACCCAAAACCCCAACTCTTAAACCCTTTACTGGGACACCTAACAAACTCCCCCACCCCACAGAATGCCTTCTTTCTCTACAACCAAATGCTCCACCACCCAACTTCCCATAACCACTACACCTTCACTTATGCTCTCAAGGCTTGTTGCTTGCTACATGCACGCAATAAAGCCCAAGAAATCCATGCCCACGTCCTCAAATCCGGTCACTTTTCCGATACTTTCATCCAAAACTCACTGCTTCATTTCTACCTAATTCAATCTGACATTGTTTCCGCTACCCGGGTTTTCGATTCAATACCACTCCCGGATGTTGTTTCCTGGACTTCGATGATTTCGGGTCTTGCTAAGTGTGGCTTTGTAGAGGAAGCAATTCTTAAGTTTATGTCCATGGATGTGGAGCCTAATTATGCTACTCTTGTCATTGTTATGTCTGCTTGTTCAAGTTTAGGAGCTTTCAAGTTTGGTAAAGCTGTTCATGGCTATTGTCTGAGGAATTTACGTGCAAGGAATATTATTTTGGACAATGCAGTGTTAGATTTCTATTTGAGATGTGGGTCTCTAGAGAGTGCTAGGTACCTGTTTGTAAATATGCCTAAGAGAGATGTGTATTCTTGGACTAGCGTGGTGGGTGGTTATGCACAAAGAGGCTTTTGTGAAGAGGCAGTGAGGCTTTTCCAACAAATGGTGCAAAGAGGAGAAGCTGAGCCTAATGAGGCTACCATTGTCAACGCATCGTCAGCGTGTTCTTCGATTGGGGCATTGAGTTTAGGCCAGTGGGTGCATAACTATGCAAGTACGCGGCCAGATCTCATGGTGAACGGCAATGTAGGAAATGCCTTAATCAACATGTATGTCAAGTGTGGCGATGTGGGTACGGCCATTTCGGTTTTTAAAGGCCTGGATTGCAAGGATATCATTTCCTGGAGTACCATCATAAGCGGCATGGCCATGAATGGCCATGGTATGCACGCATTGCAGCTCTTTTCGCTTATGCTAGTCCACGGGATTCCTCCTGATGATGTGACCTTCCTTGGCTTGTTATCAGCATGCAGTCATACAGGCCTAGTTGATCAAGGGTTGATATTATTTAATGCTATGAAAGATGTTTACAGGATTGTCCCTAAAACACAGCATTACGCATGTCTGGTTGATATGTATGGCCGAGCAGGGTTCTTGGAGGAAGCAGAGGGTTTCATTAAAGAAATGCCAATGAAAGCAGACGGCCCTGTTTGGGGAGCACTGCTAAATGCTTGCAAGATTCATGGGAATGAGAAGATGTTTGAGAGGGTCAGGGATGATCTCCTCAAGAGTAGAGGAGTAAGCACTGGAACTTATGCTCTATTGTCAAATACGTACGCTAATCACGATAGATGGGACGATGCTAATAATGTTCGTGACGAAATGAGACGGATGGGGTTGAAGAAACTGCCCGGATGTAGTCGCATAGAGGTTGATCCATCCATCTCGCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

506

Amino Acids

56.12

Weight (kDa)

8.13

Isoelectric Point (pI)

39.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 618
AccB1I GGYRCC 1 cut(s) 618
AccB7I CCANNNNNTGG 1 cut(s) 727
AccII CGCG 1 cut(s) 844
AciI CCGC 3 cut(s) 318, 844, 984
AclWI GGATC 1 cut(s) 1493
AcoI YGGCCR 5 cut(s) 845, 921, 990, 1000, 1204
AcsI RAATTY 1 cut(s) 538
AfaI GTAC 5 cut(s) 620, 841, 919, 973, 1400
AfiI CCNNNNNNNGG 6 cut(s) 73, 74, 324, 727, 1276, 1277
AflII CTTAAG 1 cut(s) 419
AflIII ACRYGT 1 cut(s) 891
AgsI TTSAA 5 cut(s) 302, 339, 486, 502, 1465
AjiI CACGTC 1 cut(s) 235
AjnI CCWGG 3 cut(s) 362, 942, 965
AjuI GAANNNNNNNTTGG 2 cut(s) 545, 577
AluBI AGCT 4 cut(s) 497, 515, 746, 1024
AluI AGCT 4 cut(s) 497, 515, 746, 1024
Alw21I GWGCWC 1 cut(s) 1285
Alw26I GTCTC 2 cut(s) 606, 1444
AlwI GGATC 1 cut(s) 1493
Ama87I CYCGRG 1 cut(s) 324
AoxI GGCC 9 cut(s) 814, 845, 921, 940, 990, 1000, 1105, 1204, 1267
ApeKI GCWGC 1 cut(s) 1021
ApoI RAATTY 1 cut(s) 538
Asp700I GAANNNNTTC 2 cut(s) 110, 414
Asp718I GGTACC 1 cut(s) 618
AspS9I GGNCC 1 cut(s) 1268
AsuC2I CCSGG 4 cut(s) 325, 326, 350, 1476
AsuHPI GGTGA 1 cut(s) 871
AvaI CYCGRG 1 cut(s) 324
BalI TGGCCA 2 cut(s) 992, 1002
BanI GGYRCC 1 cut(s) 618
Bbv12I GWGCWC 1 cut(s) 1285
BbvI GCAGC 1 cut(s) 1033
BccI CCATC 5 cut(s) 983, 1410, 1450, 1510, 1514
BceAI ACGGC 3 cut(s) 880, 936, 1282
BciT130I CCWGG 3 cut(s) 364, 944, 967
BclI TGATCA 1 cut(s) 1114
BcnI CCSGG 4 cut(s) 325, 326, 350, 1476
BcoDI GTCTC 2 cut(s) 606, 1444
BfaI CTAG 5 cut(s) 605, 615, 663, 1040, 1109
BfrI CTTAAG 1 cut(s) 419
BglII AGATCT 1 cut(s) 850
BisI GCNGC 3 cut(s) 845, 985, 1022
BlpI GCTNAGC 1 cut(s) 747
BlsI GCNGC 3 cut(s) 846, 986, 1023
Bme1390I CCNGG 7 cut(s) 325, 326, 350, 364, 944, 967, 1476
BmeT110I CYCGRG 1 cut(s) 324
BmgBI CACGTC 1 cut(s) 235
BmgT120I GGNCC 1 cut(s) 1268
BmiI GGNNCC 2 cut(s) 444, 620
BmrFI CCNGG 7 cut(s) 325, 326, 350, 364, 944, 967, 1476
BmrI ACTGGG 1 cut(s) 83
BmsI GCATC 2 cut(s) 785, 1414
BmuI ACTGGG 1 cut(s) 83
BpmI CTGGAG 1 cut(s) 988
Bpu1102I GCTNAGC 1 cut(s) 747
BpuEI CTTGAG 2 cut(s) 164, 1334
BpuMI CCSGG 4 cut(s) 325, 326, 350, 1476
BsaAI YACGTR 2 cut(s) 545, 1398
BsaI GGTCTC 1 cut(s) 606
BsaJI CCNNGG 5 cut(s) 324, 432, 1003, 1045, 1075
BsaWI WCCGGW 1 cut(s) 245
Bsc4I CCNNNNNNNGG 6 cut(s) 73, 74, 324, 727, 1276, 1277
Bse1I ACTGG 3 cut(s) 78, 817, 1375
Bse3DI GCAATG 2 cut(s) 874, 1016
BseBI CCWGG 3 cut(s) 364, 944, 967
BseDI CCNNGG 5 cut(s) 324, 432, 1003, 1045, 1075
BseGI GGATG 7 cut(s) 267, 358, 442, 1345, 1461, 1484, 1502
BseLI CCNNNNNNNGG 6 cut(s) 73, 74, 324, 727, 1276, 1277
BseMI GCAATG 2 cut(s) 874, 1016
BseMII CTCAG 2 cut(s) 524, 738
BseNI ACTGG 3 cut(s) 78, 817, 1375
BseRI GAGGAG 3 cut(s) 753, 1337, 1374
BseXI GCAGC 1 cut(s) 1033
Bsh1236I CGCG 1 cut(s) 844
BshFI GGCC 9 cut(s) 816, 847, 923, 942, 992, 1002, 1107, 1206, 1269
BshNI GGYRCC 1 cut(s) 618
BsiHKAI GWGCWC 1 cut(s) 1285
BsiHKCI CYCGRG 1 cut(s) 324
BsiSI CCGG 4 cut(s) 246, 325, 350, 1476
BsiWI CGTACG 1 cut(s) 1398
BslFI GGGAC 3 cut(s) 90, 1148, 1433
BslI CCNNNNNNNGG 6 cut(s) 73, 74, 324, 727, 1276, 1277
BsmAI GTCTC 2 cut(s) 606, 1444
BsmBI CGTCTC 1 cut(s) 1444
BsmFI GGGAC 3 cut(s) 90, 1148, 1433
BsmI GAATGC 1 cut(s) 112
BsnI GGCC 9 cut(s) 816, 847, 923, 942, 992, 1002, 1107, 1206, 1269
Bso31I GGTCTC 1 cut(s) 606
BsoBI CYCGRG 1 cut(s) 324
Bsp1286I GDGCHC 1 cut(s) 1285
Bsp143I GATC 4 cut(s) 850, 1114, 1342, 1498
Bsp1720I GCTNAGC 1 cut(s) 747
Bsp19I CCATGG 2 cut(s) 432, 1003
BspACI CCGC 3 cut(s) 318, 844, 984
BspANI GGCC 9 cut(s) 816, 847, 923, 942, 992, 1002, 1107, 1206, 1269
BspCNI CTCAG 2 cut(s) 525, 739
BspFNI CGCG 1 cut(s) 844
BspLI GGNNCC 2 cut(s) 444, 620
BspPI GGATC 1 cut(s) 1493
BspT107I GGYRCC 1 cut(s) 618
BspTI CTTAAG 1 cut(s) 419
BspTNI GGTCTC 1 cut(s) 606
BsrDI GCAATG 2 cut(s) 874, 1016
BsrI ACTGG 3 cut(s) 78, 817, 1375
BssECI CCNNGG 5 cut(s) 324, 432, 1003, 1045, 1075
BssMI GATC 4 cut(s) 850, 1114, 1342, 1498
BssT1I CCWWGG 3 cut(s) 432, 1003, 1075
Bst2UI CCWGG 3 cut(s) 364, 944, 967
Bst6I CTCTTC 1 cut(s) 696
BstAFI CTTAAG 1 cut(s) 419
BstAPI GCANNNNNTGC 1 cut(s) 1018
BstBAI YACGTR 2 cut(s) 545, 1398
BstC8I GCNNGC 5 cut(s) 194, 205, 1014, 1093, 1297
BstDEI CTNAG 4 cut(s) 390, 533, 639, 747
BstDSI CCRYGG 3 cut(s) 432, 1003, 1045
BstF5I GGATG 7 cut(s) 267, 358, 442, 1345, 1461, 1484, 1502
BstFNI CGCG 1 cut(s) 844
BstKTI GATC 4 cut(s) 853, 1117, 1345, 1501
BstMAI GTCTC 2 cut(s) 606, 1444
BstMBI GATC 4 cut(s) 850, 1114, 1342, 1498
BstMWI GCNNNNNNNGC 5 cut(s) 182, 782, 948, 1018, 1030
BstNI CCWGG 3 cut(s) 364, 944, 967
BstNSI RCATGY 4 cut(s) 203, 895, 1095, 1188
BstSCI CCNGG 7 cut(s) 323, 324, 348, 362, 942, 965, 1474
BstSNI TACGTA 1 cut(s) 1398
BstUI CGCG 1 cut(s) 844
BstV1I GCAGC 1 cut(s) 1033
BstX2I RGATCY 1 cut(s) 850
BstXI CCANNNNNNTGG 1 cut(s) 439
BstYI RGATCY 1 cut(s) 850
BsuRI GGCC 9 cut(s) 816, 847, 923, 942, 992, 1002, 1107, 1206, 1269
BtgI CCRYGG 3 cut(s) 432, 1003, 1045
BtgZI GCGATG 1 cut(s) 924
BtrI CACGTC 1 cut(s) 235
BtsCI GGATG 7 cut(s) 267, 358, 442, 1345, 1461, 1484, 1502
BtsI GCAGTG 4 cut(s) 278, 579, 714, 1283
BtsIMutI CAGTG 6 cut(s) 278, 579, 714, 824, 1283, 1368
Cac8I GCNNGC 5 cut(s) 194, 205, 1014, 1093, 1297
Cfr13I GGNCC 1 cut(s) 1268
Cfr9I CCCGGG 1 cut(s) 324
Csp6I GTAC 5 cut(s) 619, 840, 918, 972, 1399
CviQI GTAC 5 cut(s) 619, 840, 918, 972, 1399
DdeI CTNAG 4 cut(s) 390, 533, 639, 747
DpnI GATC 4 cut(s) 852, 1116, 1344, 1500
DpnII GATC 4 cut(s) 850, 1114, 1342, 1498
DraI TTTAAA 1 cut(s) 937
EaeI YGGCCR 5 cut(s) 845, 921, 990, 1000, 1204
Eam1104I CTCTTC 1 cut(s) 696
EarI CTCTTC 1 cut(s) 696
Eco105I TACGTA 1 cut(s) 1398
Eco130I CCWWGG 3 cut(s) 432, 1003, 1075
Eco147I AGGCCT 2 cut(s) 942, 1107
Eco31I GGTCTC 1 cut(s) 606
Eco32I GATATC 1 cut(s) 958
Eco88I CYCGRG 1 cut(s) 324
EcoRII CCWGG 3 cut(s) 362, 942, 965
EcoRV GATATC 1 cut(s) 958
EcoT14I CCWWGG 3 cut(s) 432, 1003, 1075
ErhI CCWWGG 3 cut(s) 432, 1003, 1075
Esp3I CGTCTC 1 cut(s) 1444
FalI AAGNNNNNCTT 4 cut(s) 383, 415, 402, 434
FaqI GGGAC 3 cut(s) 90, 1148, 1433
FbaI TGATCA 1 cut(s) 1114
Fnu4HI GCNGC 3 cut(s) 845, 985, 1022
FokI GGATG 7 cut(s) 254, 365, 449, 1352, 1468, 1489, 1491
Fsp4HI GCNGC 3 cut(s) 845, 985, 1022
FspBI CTAG 5 cut(s) 605, 615, 663, 1040, 1109
GluI GCNGC 3 cut(s) 845, 985, 1022
GsuI CTGGAG 1 cut(s) 988
HaeIII GGCC 9 cut(s) 816, 847, 923, 942, 992, 1002, 1107, 1206, 1269
HapII CCGG 4 cut(s) 246, 325, 350, 1476
HincII GTYRAC 1 cut(s) 772
HindII GTYRAC 1 cut(s) 772
HinfI GANTC 3 cut(s) 335, 1051, 1303
HpaII CCGG 4 cut(s) 246, 325, 350, 1476
HphI GGTGA 1 cut(s) 871
Hpy166II GTNNAC 4 cut(s) 772, 862, 1045, 1153
Hpy188I TCNGA 3 cut(s) 259, 307, 534
Hpy188III TCNNGA 5 cut(s) 605, 1058, 1351, 1409, 1439
Hpy8I GTNNAC 4 cut(s) 772, 862, 1045, 1153
HpyAV CCTTC 3 cut(s) 121, 175, 1081
HpyCH4IV ACGT 3 cut(s) 234, 544, 1397
HpyF10VI GCNNNNNNNGC 5 cut(s) 182, 782, 948, 1018, 1030
HpyF3I CTNAG 4 cut(s) 390, 533, 639, 747
HpySE526I ACGT 3 cut(s) 234, 544, 1397
KpnI GGTACC 1 cut(s) 622
Ksp22I TGATCA 1 cut(s) 1114
Kzo9I GATC 4 cut(s) 850, 1114, 1342, 1498
LmnI GCTCC 4 cut(s) 138, 442, 494, 1280
Lsp1109I GCAGC 1 cut(s) 1033
LweI GCATC 2 cut(s) 785, 1414
MaeI CTAG 5 cut(s) 605, 615, 663, 1040, 1109
MaeII ACGT 3 cut(s) 234, 544, 1397
MaeIII GTNAC 3 cut(s) 248, 1066, 1439
MalI GATC 4 cut(s) 852, 1116, 1344, 1500
MboI GATC 4 cut(s) 850, 1114, 1342, 1498
MboII GAAGA 4 cut(s) 713, 783, 1330, 1477
MflI RGATCY 1 cut(s) 850
MhlI GDGCHC 1 cut(s) 1285
MlsI TGGCCA 2 cut(s) 992, 1002
MluCI AATT 4 cut(s) 297, 414, 448, 538
MluNI TGGCCA 2 cut(s) 992, 1002
MmeI TCCRAC 1 cut(s) 745
Mox20I TGGCCA 2 cut(s) 992, 1002
MroXI GAANNNNTTC 2 cut(s) 110, 414
MscI TGGCCA 2 cut(s) 992, 1002
MseI TTAA 6 cut(s) 62, 420, 884, 936, 1134, 1242
MslI CAYNNNNRTG 5 cut(s) 437, 470, 831, 992, 1311
Msp20I TGGCCA 2 cut(s) 992, 1002
MspCI CTTAAG 1 cut(s) 419
MspI CCGG 4 cut(s) 246, 325, 350, 1476
MspR9I CCNGG 7 cut(s) 325, 326, 350, 364, 944, 967, 1476
Mva1269I GAATGC 1 cut(s) 112
MvaI CCWGG 3 cut(s) 364, 944, 967
MvnI CGCG 1 cut(s) 844
MwoI GCNNNNNNNGC 5 cut(s) 182, 782, 948, 1018, 1030
NciI CCSGG 4 cut(s) 325, 326, 350, 1476
NcoI CCATGG 2 cut(s) 432, 1003
NdeII GATC 4 cut(s) 850, 1114, 1342, 1498
NlaIV GGNNCC 2 cut(s) 444, 620
NmeAIII GCCGAG 1 cut(s) 1232
NmuCI GTSAC 3 cut(s) 248, 1066, 1439
NspI RCATGY 4 cut(s) 203, 895, 1095, 1188
PaeI GCATGC 1 cut(s) 1095
PceI AGGCCT 2 cut(s) 942, 1107
PciI ACATGT 1 cut(s) 891
PcsI WCGNNNNNNNCGW 1 cut(s) 1407
PctI GAATGC 1 cut(s) 112
PdmI GAANNNNTTC 2 cut(s) 110, 414
PfeI GAWTC 3 cut(s) 335, 1051, 1303
Pfl23II CGTACG 1 cut(s) 1398
PflMI CCANNNNNTGG 1 cut(s) 727
PfoI TCCNGGA 3 cut(s) 348, 362, 965
PkrI GCNGC 3 cut(s) 846, 986, 1023
Ppu21I YACGTR 2 cut(s) 545, 1398
PscI ACATGT 1 cut(s) 891
Psp6I CCWGG 3 cut(s) 362, 942, 965
PspGI CCWGG 3 cut(s) 362, 942, 965
PspLI CGTACG 1 cut(s) 1398
PspN4I GGNNCC 2 cut(s) 444, 620
PspPI GGNCC 1 cut(s) 1268
PsuI RGATCY 1 cut(s) 850
RsaI GTAC 5 cut(s) 620, 841, 919, 973, 1400
RsaNI GTAC 5 cut(s) 619, 840, 918, 972, 1399
RseI CAYNNNNRTG 5 cut(s) 437, 470, 831, 992, 1311
SaqAI TTAA 6 cut(s) 62, 420, 884, 936, 1134, 1242
SatI GCNGC 3 cut(s) 845, 985, 1022
Sau3AI GATC 4 cut(s) 850, 1114, 1342, 1498
Sau96I GGNCC 1 cut(s) 1268
ScrFI CCNGG 7 cut(s) 325, 326, 350, 364, 944, 967, 1476
SduI GDGCHC 1 cut(s) 1285
SfaNI GCATC 2 cut(s) 785, 1414
SmaI CCCGGG 1 cut(s) 326
SmiMI CAYNNNNRTG 5 cut(s) 437, 470, 831, 992, 1311
SmlI CTYRAG 3 cut(s) 179, 419, 1349
SmoI CTYRAG 3 cut(s) 179, 419, 1349
SnaBI TACGTA 1 cut(s) 1398
SphI GCATGC 1 cut(s) 1095
Sse9I AATT 4 cut(s) 297, 414, 448, 538
SseBI AGGCCT 2 cut(s) 942, 1107
SsiI CCGC 3 cut(s) 318, 844, 984
SspI AATATT 1 cut(s) 556
SspMI CTAG 5 cut(s) 605, 615, 663, 1040, 1109
StuI AGGCCT 2 cut(s) 942, 1107
StyD4I CCNGG 7 cut(s) 323, 324, 348, 362, 942, 965, 1474
StyI CCWWGG 3 cut(s) 432, 1003, 1075
TaiI ACGT 3 cut(s) 237, 547, 1400
TaqI TCGA 3 cut(s) 333, 371, 794
TasI AATT 4 cut(s) 297, 414, 448, 538
TauI GCSGC 2 cut(s) 847, 987
TfiI GAWTC 3 cut(s) 335, 1051, 1303
Tru1I TTAA 6 cut(s) 62, 420, 884, 936, 1134, 1242
Tru9I TTAA 6 cut(s) 62, 420, 884, 936, 1134, 1242
TscAI CASTG 6 cut(s) 285, 579, 714, 824, 1290, 1375
TseFI GTSAC 3 cut(s) 248, 1066, 1439
TseI GCWGC 1 cut(s) 1021
Tsp45I GTSAC 3 cut(s) 248, 1066, 1439
TspDTI ATGAA 8 cut(s) 256, 275, 509, 1010, 1157, 1228, 1271, 1295
TspGWI ACGGA 1 cut(s) 1468
TspMI CCCGGG 1 cut(s) 324
TspRI CASTG 6 cut(s) 285, 579, 714, 824, 1290, 1375
Van91I CCANNNNNTGG 1 cut(s) 727
Vha464I CTTAAG 1 cut(s) 419
XapI RAATTY 1 cut(s) 538
XbaI TCTAGA 1 cut(s) 604
XceI RCATGY 4 cut(s) 203, 895, 1095, 1188
XmaI CCCGGG 1 cut(s) 324
XmnI GAANNNNTTC 2 cut(s) 110, 414
XspI CTAG 5 cut(s) 605, 615, 663, 1040, 1109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.