Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001684

Physical Location & Seq

Genomic Coordinates Reverse (-)

25542381 .. 25543233

Gene Structure 853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0270300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGTACTCCTTACAGTCCTCCACTATCCAACCCACTTCGGAGCATTCCTCATCTGTACTATTCAAAGGTAGCTTGTCTTCACTCTTGAGCAACGAACATGAGGCTAAGAATTTCGACTGGAGTTCTAGGGTGAGAATTGTAAGAGGTGTAGCTCATGCATTGTCTTATATGCATCATGATTGCAAGCCACCGATTGTACATCGAGACATATCAAGCAACAACATTTTGCTCAGTGACGAATGGGAGCCTTGTGTTTCAGACTTTGGGACTGCTAGGCTTTCGAATCCGAACTCATCTAACTGGACTGCCCGTGCAGACACATATGGATATAGCTTGCTTACACTAAGAAGGTACGTAACTGAGAAATCTGTTGTTTATAGCTTTGGAGTGCTGGCCCTAGAAGTGCTAATGGGGAAGCAGGTAGGTGATTTCATATCCCCGTTTTCTCACTCGTCCGGCAGTGCAAACATATTGCTGAAGGATGTCTTGGATCAGCGCCTTCCGCCTCCTATACCTCAAGTCGAAGATGAACTGATAACCATTGCAGGGGTAGCAATTGAATGCAGAGTTGCAGACATTCCCATCCAAAATCTAGGCCAACAATGCAGAAGGTTTCTCAGGTCCTATCGTCCCAAATTGCATAAACAACAAGACATTACACTTGAACAACTCATTAACTTATATCTGGAATTGAGTAACCTAGCTAACAGTATATATGCACTATGCACTAAACTGGATCCTGCCTCTTTCATGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

252

Amino Acids

28.25

Weight (kDa)

6.44

Isoelectric Point (pI)

48.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	22 - 141	1.5e-13	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	22 - 139	1.1e-12	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001684)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g10870 FvH4_4g10872 FvH4_5g33630 FvH4_5g33630 FvH4_5g33630
malus_domestica	MD00G1175800.v1.1 MD00G1175900.v1.1 MD02G1110200.v1.1 MD02G1134900.v1.1 MD02G1135000.v1.1 MD02G1135100.v1.1 MD03G1186500.v1.1
prunus_persica	Prupe.4G247500_v2.0.a1 Prupe.5G045600_v2.0.a1
pyrus_communis	pycom03g13340 pycom03g13880
rosa_chinensis	RchiOBHm_Chr4g0406551 RchiOBHm_Chr4g0406561 RchiOBHm_Chr4g0406571 RchiOBHm_Chr7g0232221 RchiOBHm_Chr7g0232571
rosa_laevigata	RLG00000001323 RLG00000001326 RLG00000008766 RLG00000012933
rosa_multiflora	Rmu_sc0005505.1_g000001 Rmu_sc0020055.1_g000001 Rmu_ssc0000186.1_g000036
rosa_roxburghii	Rroxscaffold_3G00228190 Rroxscaffold_3G00228220 Rroxscaffold_3G00228230 Rroxscaffold_5G00351430
rosa_rugosa	Rorug04G0072200 Rorug07G0270300 Rorug07G0275100 Rorug07G0275100
rosa_samantha	Rh4AG139300 Rh4BG136400 Rh4CG146500 Rh4DG133700 Rh7AG429400 Rh7AG429600 Rh7BG399000 Rh7BG403100 Rh7BG403300 Rh7CG448200 Rh7CG448500
rosa_wichuraiana	Rw7G035240 Rw7G035490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	409
AciI	CCGC	1 cut(s)	503
AclWI	GGATC	3 cut(s)	498, 731, 744
AcsI	RAATTY	1 cut(s)	109
AcuI	CTGAAG	1 cut(s)	497
AfaI	GTAC	4 cut(s)	5, 57, 198, 353
AfiI	CCNNNNNNNGG	1 cut(s)	546
AgsI	TTSAA	3 cut(s)	64, 560, 665
AjuI	GAANNNNNNNTTGG	2 cut(s)	470, 502
AluBI	AGCT	5 cut(s)	72, 152, 333, 381, 704
AluI	AGCT	5 cut(s)	72, 152, 333, 381, 704
Alw26I	GTCTC	1 cut(s)	198
AlwI	GGATC	3 cut(s)	498, 731, 744
AoxI	GGCC	2 cut(s)	393, 595
ApoI	RAATTY	1 cut(s)	109
AspLEI	GCGC	1 cut(s)	498
AspS9I	GGNCC	2 cut(s)	394, 621
AsuHPI	GGTGA	2 cut(s)	142, 437
AsuII	TTCGAA	1 cut(s)	281
AvaII	GGWCC	1 cut(s)	621
BamHI	GGATCC	1 cut(s)	736
BarI	GAAGNNNNNNTAC	2 cut(s)	61, 93
BbsI	GAAGAC	1 cut(s)	69
BccI	CCATC	1 cut(s)	590
BcoDI	GTCTC	1 cut(s)	198
BfaI	CTAG	5 cut(s)	126, 273, 398, 593, 701
BfoI	RGCGCY	1 cut(s)	499
BfuAI	ACCTGC	1 cut(s)	409
Bme18I	GGWCC	1 cut(s)	621
BmgT120I	GGNCC	2 cut(s)	394, 621
BmiI	GGNNCC	2 cut(s)	246, 738
BmsI	GCATC	1 cut(s)	181
BpiI	GAAGAC	1 cut(s)	69
BplI	GAGNNNNNCTC	2 cut(s)	32, 64
BpmI	CTGGAG	1 cut(s)	139
Bpu14I	TTCGAA	1 cut(s)	281
BpuEI	CTTGAG	2 cut(s)	106, 501
BsaAI	YACGTR	1 cut(s)	355
Bsc4I	CCNNNNNNNGG	1 cut(s)	546
Bse1I	ACTGG	3 cut(s)	122, 305, 738
Bse3DI	GCAATG	1 cut(s)	540
BseGI	GGATG	2 cut(s)	487, 582
BseLI	CCNNNNNNNGG	1 cut(s)	546
BseMI	GCAATG	1 cut(s)	540
BseMII	CTCAG	3 cut(s)	244, 351, 631
BseNI	ACTGG	3 cut(s)	122, 305, 738
BsgI	GTGCAG	1 cut(s)	333
BshFI	GGCC	2 cut(s)	395, 597
BsiSI	CCGG	1 cut(s)	456
BslFI	GGGAC	2 cut(s)	280, 615
BslI	CCNNNNNNNGG	1 cut(s)	546
BsmAI	GTCTC	1 cut(s)	198
BsmFI	GGGAC	2 cut(s)	280, 615
BsmI	GAATGC	2 cut(s)	43, 566
BsnI	GGCC	2 cut(s)	395, 597
Bsp119I	TTCGAA	1 cut(s)	281
Bsp1407I	TGTACA	1 cut(s)	196
Bsp143I	GATC	2 cut(s)	490, 736
BspACI	CCGC	1 cut(s)	503
BspANI	GGCC	2 cut(s)	395, 597
BspCNI	CTCAG	3 cut(s)	243, 352, 630
BspHI	TCATGA	1 cut(s)	175
BspLI	GGNNCC	2 cut(s)	246, 738
BspMI	ACCTGC	1 cut(s)	409
BspPI	GGATC	3 cut(s)	498, 731, 744
BspT104I	TTCGAA	1 cut(s)	281
BsrDI	GCAATG	1 cut(s)	540
BsrGI	TGTACA	1 cut(s)	196
BsrI	ACTGG	3 cut(s)	122, 305, 738
BssMI	GATC	2 cut(s)	490, 736
Bst4CI	ACNGT	2 cut(s)	15, 710
BstAUI	TGTACA	1 cut(s)	196
BstBAI	YACGTR	1 cut(s)	355
BstBI	TTCGAA	1 cut(s)	281
BstC8I	GCNNGC	3 cut(s)	185, 335, 393
BstDEI	CTNAG	5 cut(s)	105, 230, 344, 360, 617
BstF5I	GGATG	2 cut(s)	487, 582
BstH2I	RGCGCY	1 cut(s)	499
BstHHI	GCGC	1 cut(s)	498
BstKTI	GATC	2 cut(s)	493, 739
BstMAI	GTCTC	1 cut(s)	198
BstMBI	GATC	2 cut(s)	490, 736
BstMWI	GCNNNNNNNGC	3 cut(s)	502, 551, 603
BstSNI	TACGTA	1 cut(s)	355
BstV2I	GAAGAC	1 cut(s)	69
BstX2I	RGATCY	1 cut(s)	736
BstYI	RGATCY	1 cut(s)	736
BsuRI	GGCC	2 cut(s)	395, 597
BtsCI	GGATG	2 cut(s)	487, 582
BtsI	GCAGTG	1 cut(s)	466
BtsIMutI	CAGTG	2 cut(s)	238, 466
BveI	ACCTGC	1 cut(s)	409
Cac8I	GCNNGC	3 cut(s)	185, 335, 393
CciI	TCATGA	1 cut(s)	175
CfoI	GCGC	1 cut(s)	498
Cfr13I	GGNCC	2 cut(s)	394, 621
Csp6I	GTAC	4 cut(s)	4, 56, 197, 352
CviAII	CATG	4 cut(s)	98, 155, 176, 751
CviQI	GTAC	4 cut(s)	4, 56, 197, 352
DdeI	CTNAG	5 cut(s)	105, 230, 344, 360, 617
DpnI	GATC	2 cut(s)	492, 738
DpnII	GATC	2 cut(s)	490, 736
EciI	GGCGGA	1 cut(s)	492
Eco105I	TACGTA	1 cut(s)	355
Eco47I	GGWCC	1 cut(s)	621
Eco57I	CTGAAG	1 cut(s)	497
EcoO109I	RGGNCCY	1 cut(s)	621
EcoT22I	ATGCAT	2 cut(s)	160, 174
FaeI	CATG	4 cut(s)	101, 158, 179, 754
FalI	AAGNNNNNCTT	2 cut(s)	470, 502
FaqI	GGGAC	2 cut(s)	280, 615
FatI	CATG	4 cut(s)	97, 154, 175, 750
FauNDI	CATATG	1 cut(s)	322
FokI	GGATG	2 cut(s)	494, 569
FspBI	CTAG	5 cut(s)	126, 273, 398, 593, 701
GlaI	GCGC	1 cut(s)	497
GsuI	CTGGAG	1 cut(s)	139
HaeII	RGCGCY	1 cut(s)	499
HaeIII	GGCC	2 cut(s)	395, 597
HapII	CCGG	1 cut(s)	456
HhaI	GCGC	1 cut(s)	498
Hin1II	CATG	4 cut(s)	101, 158, 179, 754
Hin6I	GCGC	1 cut(s)	496
HinP1I	GCGC	1 cut(s)	496
HinfI	GANTC	1 cut(s)	283
HpaII	CCGG	1 cut(s)	456
HphI	GGTGA	2 cut(s)	142, 437
Hpy188I	TCNGA	3 cut(s)	40, 259, 288
Hpy188III	TCNNGA	4 cut(s)	85, 176, 203, 686
HpyAV	CCTTC	4 cut(s)	342, 472, 509, 603
HpyCH4III	ACNGT	2 cut(s)	15, 710
HpyCH4IV	ACGT	1 cut(s)	354
HpyF10VI	GCNNNNNNNGC	3 cut(s)	502, 551, 603
HpyF3I	CTNAG	5 cut(s)	105, 230, 344, 360, 617
HpySE526I	ACGT	1 cut(s)	354
Hsp92II	CATG	4 cut(s)	101, 158, 179, 754
HspAI	GCGC	1 cut(s)	496
Kzo9I	GATC	2 cut(s)	490, 736
LmnI	GCTCC	2 cut(s)	40, 244
LweI	GCATC	1 cut(s)	181
MaeI	CTAG	5 cut(s)	126, 273, 398, 593, 701
MaeII	ACGT	1 cut(s)	354
MaeIII	GTNAC	3 cut(s)	233, 355, 695
MalI	GATC	2 cut(s)	492, 738
MboI	GATC	2 cut(s)	490, 736
MboII	GAAGA	2 cut(s)	69, 536
MfeI	CAATTG	1 cut(s)	555
MflI	RGATCY	1 cut(s)	736
MluCI	AATT	5 cut(s)	109, 135, 555, 635, 689
MmeI	TCCRAC	1 cut(s)	52
MnlI	CCTC	7 cut(s)	28, 58, 94, 137, 516, 525, 754
Mph1103I	ATGCAT	2 cut(s)	160, 174
MseI	TTAA	1 cut(s)	675
MspI	CCGG	1 cut(s)	456
MunI	CAATTG	1 cut(s)	555
Mva1269I	GAATGC	2 cut(s)	43, 566
MwoI	GCNNNNNNNGC	3 cut(s)	502, 551, 603
NdeI	CATATG	1 cut(s)	322
NdeII	GATC	2 cut(s)	490, 736
NlaIII	CATG	4 cut(s)	101, 158, 179, 754
NlaIV	GGNNCC	2 cut(s)	246, 738
NmuCI	GTSAC	1 cut(s)	233
NsiI	ATGCAT	2 cut(s)	160, 174
NspV	TTCGAA	1 cut(s)	281
PagI	TCATGA	1 cut(s)	175
PctI	GAATGC	2 cut(s)	43, 566
PfeI	GAWTC	1 cut(s)	283
Ppu21I	YACGTR	1 cut(s)	355
PpuMI	RGGWCCY	1 cut(s)	621
Psp5II	RGGWCCY	1 cut(s)	621
PspN4I	GGNNCC	2 cut(s)	246, 738
PspPI	GGNCC	2 cut(s)	394, 621
PspPPI	RGGWCCY	1 cut(s)	621
PsuI	RGATCY	1 cut(s)	736
RsaI	GTAC	4 cut(s)	5, 57, 198, 353
RsaNI	GTAC	4 cut(s)	4, 56, 197, 352
SaqAI	TTAA	1 cut(s)	675
Sau3AI	GATC	2 cut(s)	490, 736
Sau96I	GGNCC	2 cut(s)	394, 621
SfaNI	GCATC	1 cut(s)	181
SfuI	TTCGAA	1 cut(s)	281
SinI	GGWCC	1 cut(s)	621
SmlI	CTYRAG	2 cut(s)	85, 516
SmoI	CTYRAG	2 cut(s)	85, 516
SnaBI	TACGTA	1 cut(s)	355
Sse9I	AATT	5 cut(s)	109, 135, 555, 635, 689
SsiI	CCGC	1 cut(s)	503
SspMI	CTAG	5 cut(s)	126, 273, 398, 593, 701
TaaI	ACNGT	2 cut(s)	15, 710
TaiI	ACGT	1 cut(s)	357
TaqI	TCGA	4 cut(s)	114, 202, 281, 522
TasI	AATT	5 cut(s)	109, 135, 555, 635, 689
TatI	WGTACW	3 cut(s)	3, 55, 196
TfiI	GAWTC	1 cut(s)	283
Tru1I	TTAA	1 cut(s)	675
Tru9I	TTAA	1 cut(s)	675
TscAI	CASTG	2 cut(s)	238, 466
TseFI	GTSAC	1 cut(s)	233
Tsp45I	GTSAC	1 cut(s)	233
TspDTI	ATGAA	3 cut(s)	421, 543, 739
TspRI	CASTG	2 cut(s)	238, 466
VpaK11BI	GGWCC	1 cut(s)	621
XapI	RAATTY	1 cut(s)	109
XspI	CTAG	5 cut(s)	126, 273, 398, 593, 701
Zsp2I	ATGCAT	2 cut(s)	160, 174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.