Rh7AG429400

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Reverse (-)
57687954 .. 57689788
1835 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG429400.1

Sequence Viewer

Length: 168 bp
ATGGAAGCTGATGGTCCTGTTTGGGGAGCGCTGGTTAATGCGTGCAAAATTCATGGGAATAATGAGATGGTTGAGAGGATCAGAGAAGGCCTCTGCAATAGTGCACGACATACAGTGGTGGAAAATAAGCAGTTAAGAGATGCCTTCTTATGTGGGAGGGTCCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

55

Amino Acids

6.12

Weight (kDa)

6.7

Isoelectric Point (pI)

27.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 86
AcsI RAATTY 1 cut(s) 48
AfeI AGCGCT 1 cut(s) 30
AfiI CCNNNNNNNGG 1 cut(s) 23
AluBI AGCT 1 cut(s) 8
AluI AGCT 1 cut(s) 8
Alw21I GWGCWC 1 cut(s) 106
Alw44I GTGCAC 1 cut(s) 102
AlwI GGATC 1 cut(s) 86
Aor51HI AGCGCT 1 cut(s) 30
AoxI GGCC 1 cut(s) 88
ApaLI GTGCAC 1 cut(s) 102
ApoI RAATTY 1 cut(s) 48
AspLEI GCGC 1 cut(s) 31
AspS9I GGNCC 2 cut(s) 14, 160
AvaII GGWCC 2 cut(s) 14, 160
BaeGI GKGCMC 1 cut(s) 106
Bbv12I GWGCWC 1 cut(s) 106
BccI CCATC 2 cut(s) 5, 61
BfoI RGCGCY 1 cut(s) 32
Bme18I GGWCC 2 cut(s) 14, 160
BmgT120I GGNCC 2 cut(s) 14, 160
BmiI GGNNCC 1 cut(s) 161
BmsI GCATC 1 cut(s) 130
BplI GAGNNNNNCTC 2 cut(s) 75, 107
BsaXI ACNNNNNCTCC 2 cut(s) 18, 48
Bsc4I CCNNNNNNNGG 1 cut(s) 23
BseLI CCNNNNNNNGG 1 cut(s) 23
BseSI GKGCMC 1 cut(s) 106
BshFI GGCC 1 cut(s) 90
BsiHKAI GWGCWC 1 cut(s) 106
BslI CCNNNNNNNGG 1 cut(s) 23
BsnI GGCC 1 cut(s) 90
Bsp1286I GDGCHC 1 cut(s) 106
Bsp143I GATC 1 cut(s) 78
BspANI GGCC 1 cut(s) 90
BspLI GGNNCC 1 cut(s) 161
BspPI GGATC 1 cut(s) 86
BssMI GATC 1 cut(s) 78
Bst4CI ACNGT 1 cut(s) 115
BstC8I GCNNGC 1 cut(s) 43
BstH2I RGCGCY 1 cut(s) 32
BstHHI GCGC 1 cut(s) 31
BstKTI GATC 1 cut(s) 81
BstMBI GATC 1 cut(s) 78
BstSLI GKGCMC 1 cut(s) 106
BsuRI GGCC 1 cut(s) 90
BtsIMutI CAGTG 1 cut(s) 120
Cac8I GCNNGC 1 cut(s) 43
CfoI GCGC 1 cut(s) 31
Cfr13I GGNCC 2 cut(s) 14, 160
CviAII CATG 1 cut(s) 53
CviJI RGCY 2 cut(s) 8, 90
CviKI_1 RGCY 2 cut(s) 8, 90
DpnI GATC 1 cut(s) 80
DpnII GATC 1 cut(s) 78
Eco147I AGGCCT 1 cut(s) 90
Eco47I GGWCC 2 cut(s) 14, 160
Eco47III AGCGCT 1 cut(s) 30
EcoO109I RGGNCCY 1 cut(s) 160
FaeI CATG 1 cut(s) 56
FaiI YATR 3 cut(s) 54, 111, 151
FatI CATG 1 cut(s) 52
GlaI GCGC 1 cut(s) 30
HaeII RGCGCY 1 cut(s) 32
HaeIII GGCC 1 cut(s) 90
HhaI GCGC 1 cut(s) 31
Hin1II CATG 1 cut(s) 56
Hin6I GCGC 1 cut(s) 29
HinP1I GCGC 1 cut(s) 29
Hpy166II GTNNAC 1 cut(s) 104
Hpy188I TCNGA 1 cut(s) 83
Hpy8I GTNNAC 1 cut(s) 104
HpyAV CCTTC 2 cut(s) 80, 154
HpyCH4III ACNGT 1 cut(s) 115
HpyCH4V TGCA 3 cut(s) 45, 96, 104
Hsp92II CATG 1 cut(s) 56
HspAI GCGC 1 cut(s) 29
Kzo9I GATC 1 cut(s) 78
LmnI GCTCC 1 cut(s) 26
LpnPI CCDG 2 cut(s) 17, 30
LweI GCATC 1 cut(s) 130
MalI GATC 1 cut(s) 80
MboI GATC 1 cut(s) 78
MhlI GDGCHC 1 cut(s) 106
MluCI AATT 1 cut(s) 48
MnlI CCTC 3 cut(s) 69, 101, 150
MseI TTAA 2 cut(s) 36, 134
NdeII GATC 1 cut(s) 78
NlaIII CATG 1 cut(s) 56
NlaIV GGNNCC 1 cut(s) 161
PceI AGGCCT 1 cut(s) 90
PpuMI RGGWCCY 1 cut(s) 160
Psp5II RGGWCCY 1 cut(s) 160
PspN4I GGNNCC 1 cut(s) 161
PspPI GGNCC 2 cut(s) 14, 160
PspPPI RGGWCCY 1 cut(s) 160
SaqAI TTAA 2 cut(s) 36, 134
Sau3AI GATC 1 cut(s) 78
Sau96I GGNCC 2 cut(s) 14, 160
SduI GDGCHC 1 cut(s) 106
SetI ASST 1 cut(s) 10
SfaNI GCATC 1 cut(s) 130
SgeI CNNG 5 cut(s) 29, 44, 54, 65, 117
SinI GGWCC 2 cut(s) 14, 160
Sse9I AATT 1 cut(s) 48
SseBI AGGCCT 1 cut(s) 90
StuI AGGCCT 1 cut(s) 90
TaaI ACNGT 1 cut(s) 115
TasI AATT 1 cut(s) 48
Tru1I TTAA 2 cut(s) 36, 134
Tru9I TTAA 2 cut(s) 36, 134
TscAI CASTG 1 cut(s) 120
TspDTI ATGAA 1 cut(s) 41
TspRI CASTG 1 cut(s) 120
VneI GTGCAC 1 cut(s) 102
VpaK11BI GGWCC 2 cut(s) 14, 160
XapI RAATTY 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.