Rh7BG403300

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0001684
Physical Location & Seq
Reverse (-)
44950056 .. 44951561
1506 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG403300.1

Sequence Viewer

Length: 1506 bp
ATGAGACAACTAAACCAAATCCATGCGCTGCTGGTCAAAAATCCAAAACCCCAAGTTTTAAACCCCTGGCTGGGATATCTGACAAACTCTTCAGCACCACAAAATGCCCTTTTTCTCTATAACCAAATGCTCCACCATCCAACTTCCCATAACCACTACACATTCACTTATGCTCTAAAGGCATGCTGCTTGCTCCATTCACCCCATAAAGGCCAAGAAATCCATGCCCACGTCACAAAATCCGGTCACATATCTGATACCTTCATCCAAAACTCTTTGCTCCACTTTTACGTAATCCAATCTGACATTGTTTCTGCTACCCGCGTTTTTGATTCAATACCCGTACCGGATGTTGTTTCCTGGACTTCGATGATTTCGGGTCTTTCCAAGTGTGGGTTTGTGGAGGAAGCCATTGTCAAGTTTATGTCCATGGACGTGAAGCCTAATTCTACTACTCTTGTGACTGTTTTGTCTTCTTGTTCTACTTTAAGAGCTTTGTTTGGTAAAGCTGTTCATGGCCATTGTTTGAGGAACTTTCGGGAAAGAAATTTGATTTTGGACAATGCGGTGTTGGATTTCTATCTGAGATGTGGATCTTTGGCGAGTGCACGATACCTGTTTGTCAATATGCCCGAGAGAGATGTGGTTTCTTGGACTATCATGGTGGGTGGTTATGCACAAAGAGGTTTTTGTGAAGAGGCAGTAAAACTTTTCCAACAACTGCTGCAGGGTGGAGAAGCCGAGCCTAATGAGGCTACCATTGTCAATGTATTGTCAGCATGTTCTTCGATTTGTGCATTGAGTTCAGGCCAGCAGGTGCATTCCTATATCAGTACTCGACGAGATCTCACGGCGAATGGCAATGTGGGGAATGCCTTGGTCAACATGTATGTGAAGTGTGGAAACTTGGAAATGGCTATCTCAGTTTTTCAGTCCCTGGAGCACAAAGATATCATTTCATGGAGTACCATAATATGCGGCATGGCCATGAATGGCCATGGCATACACGTGTTGCAGCTCTTTTCCAGTATGCTACTCAATGGGGTGTCTCCTGATGGTGTAACCTTCCTCGGGTTGTTATCAGCATGCAGTCATGCTGGCCTGGTAAATCAAGGGTTGATGTTCTTCAATGCTATGAAGAAAGTTTACCGGATTGTCCCTGAAACACAGCATTATGCGTGTCTGGTCGATATGTATGGTCGAGCTGGGCTATTAGAGGAAGCAGAGGCTTTTATTAAAGAAATGCCAACAGAAGCTGATGGTCCTGTTTGGGGAGCGCTGCTTAATGCTTGTAAAATCTATGGGAATGAGGAGATGGTTGAGAGGATCAGAGAAGGCCTCCGCAATAGTGCAGGAGTGAGCACCGGAACTTATGCTCTGTTATCAAATGCTTATGCTAAACATGATAGGTGGGATGATTCTAATAAGGTTCGTGATGAAATGAGAGAGATGGGGTTGAAGGCACCACCAGGTCGTAGTTGGATTGAAATTGGTCCGTCCATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

501

Amino Acids

55.4

Weight (kDa)

6.84

Isoelectric Point (pI)

42.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 116 - 160 1e-05 PPR repeat family
PPR PF01535 216 - 243 7.6e-06 PPR repeat
PPR_2 PF13041 316 - 364 1.6e-07 PPR repeat family
E_motif PF20431 454 - 496 5.7e-10 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 805
AasI GACNNNNNNGTC 1 cut(s) 469
Acc36I ACCTGC 1 cut(s) 805
AccB1I GGYRCC 1 cut(s) 1462
AccII CGCG 1 cut(s) 324
AciI CCGC 4 cut(s) 322, 566, 978, 1342
AclWI GGATC 2 cut(s) 601, 1334
AcoI YGGCCR 3 cut(s) 517, 984, 994
AcsI RAATTY 1 cut(s) 547
AcuI CTGAAG 1 cut(s) 75
AcvI CACGTG 1 cut(s) 1009
AfaI GTAC 3 cut(s) 345, 835, 967
AfeI AGCGCT 1 cut(s) 1278
AfiI CCNNNNNNNGG 6 cut(s) 70, 71, 209, 393, 1071, 1271
AflIII ACRYGT 3 cut(s) 885, 1006, 1008
AgsI TTSAA 4 cut(s) 336, 1129, 1459, 1487
AjiI CACGTC 2 cut(s) 232, 436
AjnI CCWGG 5 cut(s) 65, 359, 936, 1101, 1468
AluBI AGCT 5 cut(s) 494, 509, 1018, 1205, 1256
AluI AGCT 5 cut(s) 494, 509, 1018, 1205, 1256
Alw21I GWGCWC 3 cut(s) 610, 945, 1364
Alw26I GTCTC 1 cut(s) 1053
Alw44I GTGCAC 1 cut(s) 606
AlwI GGATC 2 cut(s) 601, 1334
AlwNI CAGNNNCTG 2 cut(s) 937, 1256
Ama87I CYCGRG 2 cut(s) 632, 1070
Aor51HI AGCGCT 1 cut(s) 1278
AoxI GGCC 7 cut(s) 211, 517, 808, 984, 994, 1099, 1336
ApaLI GTGCAC 1 cut(s) 606
ApeKI GCWGC 5 cut(s) 28, 186, 724, 1015, 1279
ApoI RAATTY 1 cut(s) 547
AspLEI GCGC 2 cut(s) 28, 1279
AspS9I GGNCC 2 cut(s) 1262, 1493
AsuHPI GGTGA 1 cut(s) 192
AvaI CYCGRG 2 cut(s) 632, 1070
AvaII GGWCC 2 cut(s) 1262, 1493
BaeGI GKGCMC 1 cut(s) 610
BalI TGGCCA 3 cut(s) 519, 986, 996
BanI GGYRCC 1 cut(s) 1462
BarI GAAGNNNNNNTAC 2 cut(s) 1130, 1162
BbrPI CACGTG 1 cut(s) 1009
BbsI GAAGAC 1 cut(s) 465
Bbv12I GWGCWC 3 cut(s) 610, 945, 1364
BbvI GCAGC 5 cut(s) 15, 173, 711, 1027, 1266
BccI CCATC 5 cut(s) 144, 1049, 1253, 1309, 1444
BceAI ACGGC 1 cut(s) 867
BcgI CGANNNNNNTGC 2 cut(s) 768, 802
BciT130I CCWGG 5 cut(s) 67, 361, 938, 1103, 1470
BcoDI GTCTC 1 cut(s) 1053
BfmI CTRYAG 1 cut(s) 725
BfoI RGCGCY 1 cut(s) 1280
BfuAI ACCTGC 1 cut(s) 805
BglII AGATCT 1 cut(s) 844
BisI GCNGC 6 cut(s) 29, 187, 725, 979, 1016, 1280
BlsI GCNGC 6 cut(s) 30, 188, 726, 980, 1017, 1281
BmcAI AGTACT 1 cut(s) 835
Bme1390I CCNGG 5 cut(s) 67, 361, 938, 1103, 1470
Bme18I GGWCC 2 cut(s) 1262, 1493
BmeT110I CYCGRG 2 cut(s) 632, 1070
BmgBI CACGTC 2 cut(s) 232, 436
BmgT120I GGNCC 2 cut(s) 1262, 1493
BmiI GGNNCC 1 cut(s) 1464
BmrFI CCNGG 5 cut(s) 67, 361, 938, 1103, 1470
BpiI GAAGAC 1 cut(s) 465
BplI GAGNNNNNCTC 2 cut(s) 1323, 1355
BpmI CTGGAG 1 cut(s) 959
BsaAI YACGTR 2 cut(s) 292, 1009
BsaBI GATNNNNATC 2 cut(s) 579, 592
BsaJI CCNNGG 6 cut(s) 65, 429, 876, 936, 997, 1069
BsaWI WCCGGW 4 cut(s) 242, 346, 1149, 1364
Bsc4I CCNNNNNNNGG 6 cut(s) 70, 71, 209, 393, 1071, 1271
Bse1I ACTGG 1 cut(s) 1026
Bse3DI GCAATG 1 cut(s) 868
Bse8I GATNNNNATC 2 cut(s) 579, 592
BseBI CCWGG 5 cut(s) 67, 361, 938, 1103, 1470
BseDI CCNNGG 6 cut(s) 65, 429, 876, 936, 997, 1069
BseGI GGATG 4 cut(s) 136, 264, 355, 1420
BseJI GATNNNNATC 2 cut(s) 579, 592
BseLI CCNNNNNNNGG 6 cut(s) 70, 71, 209, 393, 1071, 1271
BseMI GCAATG 1 cut(s) 868
BseMII CTCAG 2 cut(s) 575, 936
BseNI ACTGG 1 cut(s) 1026
BseRI GAGGAG 1 cut(s) 1325
BseSI GKGCMC 1 cut(s) 610
BseXI GCAGC 5 cut(s) 15, 173, 711, 1027, 1266
BseYI CCCAGC 2 cut(s) 70, 1205
BsgI GTGCAG 1 cut(s) 1371
Bsh1236I CGCG 1 cut(s) 324
BshFI GGCC 7 cut(s) 213, 519, 810, 986, 996, 1101, 1338
BshNI GGYRCC 1 cut(s) 1462
BsiHKAI GWGCWC 3 cut(s) 610, 945, 1364
BsiHKCI CYCGRG 2 cut(s) 632, 1070
BsiSI CCGG 4 cut(s) 243, 347, 1150, 1365
BslFI GGGAC 2 cut(s) 919, 1142
BslI CCNNNNNNNGG 6 cut(s) 70, 71, 209, 393, 1071, 1271
BsmAI GTCTC 1 cut(s) 1053
BsmFI GGGAC 2 cut(s) 919, 1142
BsmI GAATGC 2 cut(s) 820, 877
BsnI GGCC 7 cut(s) 213, 519, 810, 986, 996, 1101, 1338
BsoBI CYCGRG 2 cut(s) 632, 1070
Bsp1286I GDGCHC 3 cut(s) 610, 945, 1364
Bsp143I GATC 3 cut(s) 593, 844, 1326
Bsp19I CCATGG 2 cut(s) 429, 997
BspACI CCGC 4 cut(s) 322, 566, 978, 1342
BspANI GGCC 7 cut(s) 213, 519, 810, 986, 996, 1101, 1338
BspCNI CTCAG 2 cut(s) 576, 935
BspFNI CGCG 1 cut(s) 324
BspLI GGNNCC 1 cut(s) 1464
BspMAI CTGCAG 1 cut(s) 729
BspMI ACCTGC 1 cut(s) 805
BspPI GGATC 2 cut(s) 601, 1334
BspT107I GGYRCC 1 cut(s) 1462
BsrDI GCAATG 1 cut(s) 868
BsrI ACTGG 1 cut(s) 1026
BssECI CCNNGG 6 cut(s) 65, 429, 876, 936, 997, 1069
BssMI GATC 3 cut(s) 593, 844, 1326
BssT1I CCWWGG 3 cut(s) 429, 876, 997
Bst2UI CCWGG 5 cut(s) 67, 361, 938, 1103, 1470
Bst4CI ACNGT 1 cut(s) 466
Bst6I CTCTTC 2 cut(s) 94, 690
BstBAI YACGTR 2 cut(s) 292, 1009
BstC8I GCNNGC 5 cut(s) 184, 191, 812, 1087, 1099
BstDEI CTNAG 2 cut(s) 584, 922
BstDSI CCRYGG 2 cut(s) 429, 997
BstF5I GGATG 4 cut(s) 136, 264, 355, 1420
BstFNI CGCG 1 cut(s) 324
BstH2I RGCGCY 1 cut(s) 1280
BstHHI GCGC 2 cut(s) 28, 1279
BstKTI GATC 3 cut(s) 596, 847, 1329
BstMAI GTCTC 1 cut(s) 1053
BstMBI GATC 3 cut(s) 593, 844, 1326
BstMWI GCNNNNNNNGC 1 cut(s) 179
BstNI CCWGG 5 cut(s) 67, 361, 938, 1103, 1470
BstNSI RCATGY 4 cut(s) 186, 783, 889, 1089
BstSCI CCNGG 5 cut(s) 65, 359, 936, 1101, 1468
BstSFI CTRYAG 1 cut(s) 725
BstSLI GKGCMC 1 cut(s) 610
BstSNI TACGTA 1 cut(s) 292
BstUI CGCG 1 cut(s) 324
BstV1I GCAGC 5 cut(s) 15, 173, 711, 1027, 1266
BstV2I GAAGAC 1 cut(s) 465
BstX2I RGATCY 2 cut(s) 593, 844
BstYI RGATCY 2 cut(s) 593, 844
BsuRI GGCC 7 cut(s) 213, 519, 810, 986, 996, 1101, 1338
BtgI CCRYGG 2 cut(s) 429, 997
BtrI CACGTC 2 cut(s) 232, 436
BtsCI GGATG 4 cut(s) 136, 264, 355, 1420
BveI ACCTGC 1 cut(s) 805
Cac8I GCNNGC 5 cut(s) 184, 191, 812, 1087, 1099
CaiI CAGNNNCTG 2 cut(s) 937, 1256
CfoI GCGC 2 cut(s) 28, 1279
Cfr13I GGNCC 2 cut(s) 1262, 1493
CsiI ACCWGGT 1 cut(s) 1468
Csp6I GTAC 3 cut(s) 344, 834, 966
CviQI GTAC 3 cut(s) 344, 834, 966
DdeI CTNAG 2 cut(s) 584, 922
DpnI GATC 3 cut(s) 595, 846, 1328
DpnII GATC 3 cut(s) 593, 844, 1326
DraI TTTAAA 1 cut(s) 60
DrdI GACNNNNNNGTC 1 cut(s) 469
DseDI GACNNNNNNGTC 1 cut(s) 469
EaeI YGGCCR 3 cut(s) 517, 984, 994
Eam1104I CTCTTC 2 cut(s) 94, 690
EarI CTCTTC 2 cut(s) 94, 690
Eco105I TACGTA 1 cut(s) 292
Eco130I CCWWGG 3 cut(s) 429, 876, 997
Eco147I AGGCCT 1 cut(s) 1338
Eco32I GATATC 2 cut(s) 77, 952
Eco47I GGWCC 2 cut(s) 1262, 1493
Eco47III AGCGCT 1 cut(s) 1278
Eco57I CTGAAG 1 cut(s) 75
Eco72I CACGTG 1 cut(s) 1009
Eco88I CYCGRG 2 cut(s) 632, 1070
EcoRII CCWGG 5 cut(s) 65, 359, 936, 1101, 1468
EcoRV GATATC 2 cut(s) 77, 952
EcoT14I CCWWGG 3 cut(s) 429, 876, 997
ErhI CCWWGG 3 cut(s) 429, 876, 997
FaqI GGGAC 2 cut(s) 919, 1142
FauI CCCGC 1 cut(s) 329
Fnu4HI GCNGC 6 cut(s) 29, 187, 725, 979, 1016, 1280
FokI GGATG 4 cut(s) 123, 251, 362, 1427
Fsp4HI GCNGC 6 cut(s) 29, 187, 725, 979, 1016, 1280
GlaI GCGC 2 cut(s) 27, 1278
GluI GCNGC 6 cut(s) 29, 187, 725, 979, 1016, 1280
GsaI CCCAGC 2 cut(s) 74, 1209
GsuI CTGGAG 1 cut(s) 959
HaeII RGCGCY 1 cut(s) 1280
HaeIII GGCC 7 cut(s) 213, 519, 810, 986, 996, 1101, 1338
HapII CCGG 4 cut(s) 243, 347, 1150, 1365
HhaI GCGC 2 cut(s) 28, 1279
Hin6I GCGC 2 cut(s) 26, 1277
HinP1I GCGC 2 cut(s) 26, 1277
HincII GTYRAC 1 cut(s) 883
HindII GTYRAC 1 cut(s) 883
HinfI GANTC 2 cut(s) 332, 1418
HpaII CCGG 4 cut(s) 243, 347, 1150, 1365
HphI GGTGA 1 cut(s) 192
Hpy166II GTNNAC 3 cut(s) 608, 883, 1147
Hpy188I TCNGA 5 cut(s) 81, 256, 304, 585, 1331
Hpy188III TCNNGA 3 cut(s) 539, 1052, 1433
Hpy8I GTNNAC 3 cut(s) 608, 883, 1147
Hpy99I CGWCG 1 cut(s) 843
HpyAV CCTTC 4 cut(s) 271, 1075, 1328, 1453
HpyCH4III ACNGT 1 cut(s) 466
HpyCH4IV ACGT 4 cut(s) 231, 291, 435, 1008
HpyCH4V TGCA 8 cut(s) 608, 677, 727, 797, 820, 1015, 1089, 1352
HpyF10VI GCNNNNNNNGC 1 cut(s) 179
HpyF3I CTNAG 2 cut(s) 584, 922
HpySE526I ACGT 4 cut(s) 231, 291, 435, 1008
HspAI GCGC 2 cut(s) 26, 1277
Kzo9I GATC 3 cut(s) 593, 844, 1326
LmnI GCTCC 5 cut(s) 135, 198, 285, 940, 1274
Lsp1109I GCAGC 5 cut(s) 15, 173, 711, 1027, 1266
MabI ACCWGGT 1 cut(s) 1468
MaeII ACGT 4 cut(s) 231, 291, 435, 1008
MaeIII GTNAC 4 cut(s) 232, 245, 460, 1060
MalI GATC 3 cut(s) 595, 846, 1328
MboI GATC 3 cut(s) 593, 844, 1326
MboII GAAGA 6 cut(s) 81, 465, 707, 777, 1117, 1150
MflI RGATCY 2 cut(s) 593, 844
MhlI GDGCHC 3 cut(s) 610, 945, 1364
MlsI TGGCCA 3 cut(s) 519, 986, 996
MluCI AATT 3 cut(s) 445, 547, 1488
MluNI TGGCCA 3 cut(s) 519, 986, 996
MmeI TCCRAC 4 cut(s) 164, 552, 739, 1460
Mox20I TGGCCA 3 cut(s) 519, 986, 996
MscI TGGCCA 3 cut(s) 519, 986, 996
MseI TTAA 4 cut(s) 59, 488, 1236, 1284
MslI CAYNNNNRTG 4 cut(s) 434, 890, 986, 1007
Msp20I TGGCCA 3 cut(s) 519, 986, 996
MspI CCGG 4 cut(s) 243, 347, 1150, 1365
MspR9I CCNGG 5 cut(s) 67, 361, 938, 1103, 1470
Mva1269I GAATGC 2 cut(s) 820, 877
MvaI CCWGG 5 cut(s) 67, 361, 938, 1103, 1470
MvnI CGCG 1 cut(s) 324
MwoI GCNNNNNNNGC 1 cut(s) 179
NcoI CCATGG 2 cut(s) 429, 997
NdeII GATC 3 cut(s) 593, 844, 1326
NlaIV GGNNCC 1 cut(s) 1464
NmeAIII GCCGAG 1 cut(s) 766
NmuCI GTSAC 3 cut(s) 232, 245, 460
NspI RCATGY 4 cut(s) 186, 783, 889, 1089
PaeI GCATGC 2 cut(s) 186, 1089
PaqCI CACCTGC 1 cut(s) 805
PceI AGGCCT 1 cut(s) 1338
PciI ACATGT 1 cut(s) 885
PctI GAATGC 2 cut(s) 820, 877
PfeI GAWTC 2 cut(s) 332, 1418
PfoI TCCNGGA 1 cut(s) 359
PkrI GCNGC 6 cut(s) 30, 188, 726, 980, 1017, 1281
PmaCI CACGTG 1 cut(s) 1009
PmlI CACGTG 1 cut(s) 1009
Ppu21I YACGTR 2 cut(s) 292, 1009
PscI ACATGT 1 cut(s) 885
Psp6I CCWGG 5 cut(s) 65, 359, 936, 1101, 1468
PspCI CACGTG 1 cut(s) 1009
PspFI CCCAGC 2 cut(s) 70, 1205
PspGI CCWGG 5 cut(s) 65, 359, 936, 1101, 1468
PspN4I GGNNCC 1 cut(s) 1464
PspPI GGNCC 2 cut(s) 1262, 1493
PstI CTGCAG 1 cut(s) 729
PstNI CAGNNNCTG 2 cut(s) 937, 1256
PsuI RGATCY 2 cut(s) 593, 844
RsaI GTAC 3 cut(s) 345, 835, 967
RsaNI GTAC 3 cut(s) 344, 834, 966
RseI CAYNNNNRTG 4 cut(s) 434, 890, 986, 1007
SaqAI TTAA 4 cut(s) 59, 488, 1236, 1284
SatI GCNGC 6 cut(s) 29, 187, 725, 979, 1016, 1280
Sau3AI GATC 3 cut(s) 593, 844, 1326
Sau96I GGNCC 2 cut(s) 1262, 1493
ScaI AGTACT 1 cut(s) 835
ScrFI CCNGG 5 cut(s) 67, 361, 938, 1103, 1470
SduI GDGCHC 3 cut(s) 610, 945, 1364
SexAI ACCWGGT 1 cut(s) 1468
SfcI CTRYAG 1 cut(s) 725
SinI GGWCC 2 cut(s) 1262, 1493
SmiMI CAYNNNNRTG 4 cut(s) 434, 890, 986, 1007
SnaBI TACGTA 1 cut(s) 292
SphI GCATGC 2 cut(s) 186, 1089
Sse9I AATT 3 cut(s) 445, 547, 1488
SseBI AGGCCT 1 cut(s) 1338
SsiI CCGC 4 cut(s) 322, 566, 978, 1342
StuI AGGCCT 1 cut(s) 1338
StyD4I CCNGG 5 cut(s) 65, 359, 936, 1101, 1468
StyI CCWWGG 3 cut(s) 429, 876, 997
TaaI ACNGT 1 cut(s) 466
TaiI ACGT 4 cut(s) 234, 294, 438, 1011
TaqI TCGA 5 cut(s) 368, 788, 838, 1188, 1201
TasI AATT 3 cut(s) 445, 547, 1488
TatI WGTACW 1 cut(s) 833
TauI GCSGC 1 cut(s) 981
TfiI GAWTC 2 cut(s) 332, 1418
Tru1I TTAA 4 cut(s) 59, 488, 1236, 1284
Tru9I TTAA 4 cut(s) 59, 488, 1236, 1284
TseFI GTSAC 3 cut(s) 232, 245, 460
TseI GCWGC 5 cut(s) 28, 186, 724, 1015, 1279
Tsp45I GTSAC 3 cut(s) 232, 245, 460
TspDTI ATGAA 6 cut(s) 253, 503, 948, 1004, 1151, 1452
TspGWI ACGGA 1 cut(s) 1485
VneI GTGCAC 1 cut(s) 606
VpaK11BI GGWCC 2 cut(s) 1262, 1493
XapI RAATTY 1 cut(s) 547
XceI RCATGY 4 cut(s) 186, 783, 889, 1089
XcmI CCANNNNNNNNNTGG 1 cut(s) 1476
ZrmI AGTACT 1 cut(s) 835
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.