Rh7CG448500

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001684
Physical Location & Seq
Reverse (-)
58941084 .. 58944168
3085 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG448500.1

Sequence Viewer

Length: 1413 bp
ATGCTCCACCACCCAACTTCCCATAACCACTACACATTTACTTATGCTCTAAAGGCATGCTGCTTGCTCCATTCACCCCATAAAGGCCAAGAAATCCAAGCCCACGTCACAAAATCCGGTCACATATCTGATACCTTCATCCAAAACTCTTTGCTCCACTTTTACGTAATCCAATCTGACATTGTTTCTGCTACCCGCGTTTTTGATTCAATACCCGTACCGGATGTTGTTTCTTGGACTTCGATGATTTCGGGTCTTTTCAAGTGTGGGTTTGTGGAGGAAGCCATTGTCAAGTTTATGTCCATGGACGTGAAGCCTAATTCCACTACTCTTGTGACTGTTTTGTCTTCTTGTTCTACTTTAAGAACTTTGAAATTTGGTAAAGCTGTTCATGGCCATTGTTTGAGGAACTTTCGGGAAAGAAATTTGATTTTGGACAATGCGGTGTTGGATTTCTATCTGAGATGTGGATCTTTGGCGAGTGCACGATACCTGTTTGTCAATATGCCCGAGAGAGATGTGGTTTCTTGGACTATCATAGTGGGTGGTTATGCACAAAGAGGTTTTTGTGAAGAGGCAGTGAAACTTTTCCAACAACTGCTGCAGGGTGGAGAAGCTGAGCCTAATGAGGCTACCATTGTCAATGTATTGTCAGCATGTTCTTCGATTTGTGCATTAAGTTCAGGCCAGCAGGTGCATTCCTATATCAGTACTCGACGAGATCTCATGGCGAATGGCAATGTGGGGAATGCCTTGATCAACATGTATGTGAAGTGTGGAAACTTGGAAATGGCTATCTCAGTTTTTCAGTCCCTGGAGCACAAAGATATCATTTCATGGAGTACCATAATATGCGGCATGGCCATGAATGGCCATGGCATACAGGTGTTGCAGCTCTTTTCCAGTATGCTAGTCAATGGGGTGTCTCCTGATGGTGTAACCTTCCTCGGGTTGTTATCAGCATGCAGTCATGCTGGCCTGGTAAATCAAGGGTTGATGTTCTTCAATGCTATGAAAAAAGTCTACCGGATTGTCCCTGAAACACAGCATTATGCATGTCTGGTCGATATGTATGGTCGAGCTGGGCTATTAGAGGAAGCAGAGGCTTTTATTAAAGAAATGCCAACAGAAGCTGATGGTCCTGTTTGGGGAGCGCTGCTTAATGCTTGTAAAATCTATGGGAATGAGGAGATGGTTGAGAGGATCAGAGAAGGCCTCCGCAATAGTGCAGGAGTGAGCACCGGAACTTATGCTCTGTTATCAAATGCTTATGCTAAACATGATAGGTGGGATGATTCTAATAAGGCAAAGATAGTTGGAGATGAACTCCTTGATAGAGTTAGGGAAAGTCAGAGAATTATTGCCTGCCTGGTTTGGAGGTGGGAGGAAACAAGGTTTAAGATAAGGTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

470

Amino Acids

52.26

Weight (kDa)

6.78

Isoelectric Point (pI)

42.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 74 - 118 5.1e-06 PPR repeat family
PPR_2 PF13041 275 - 323 5.1e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 682
AasI GACNNNNNNGTC 1 cut(s) 343
Acc36I ACCTGC 1 cut(s) 682
AccI GTMKAC 1 cut(s) 1023
AccII CGCG 1 cut(s) 198
AciI CCGC 4 cut(s) 196, 443, 855, 1219
AclWI GGATC 2 cut(s) 478, 1211
AcoI YGGCCR 3 cut(s) 394, 861, 871
AcsI RAATTY 2 cut(s) 374, 424
AfaI GTAC 3 cut(s) 219, 712, 844
AfeI AGCGCT 1 cut(s) 1155
AfiI CCNNNNNNNGG 3 cut(s) 83, 948, 1148
AflIII ACRYGT 1 cut(s) 762
AgsI TTSAA 4 cut(s) 210, 262, 373, 1006
AjiI CACGTC 2 cut(s) 106, 310
AjnI CCWGG 3 cut(s) 813, 978, 1368
AluBI AGCT 5 cut(s) 386, 617, 895, 1082, 1133
AluI AGCT 5 cut(s) 386, 617, 895, 1082, 1133
Alw21I GWGCWC 3 cut(s) 487, 822, 1241
Alw26I GTCTC 1 cut(s) 930
Alw44I GTGCAC 1 cut(s) 483
AlwI GGATC 2 cut(s) 478, 1211
AlwNI CAGNNNCTG 2 cut(s) 814, 1133
Ama87I CYCGRG 2 cut(s) 509, 947
Aor51HI AGCGCT 1 cut(s) 1155
AoxI GGCC 7 cut(s) 85, 394, 685, 861, 871, 976, 1213
ApaLI GTGCAC 1 cut(s) 483
ApeKI GCWGC 4 cut(s) 60, 601, 892, 1156
ApoI RAATTY 2 cut(s) 374, 424
Asp700I GAANNNNTTC 1 cut(s) 587
AspLEI GCGC 1 cut(s) 1156
AspS9I GGNCC 1 cut(s) 1139
AsuHPI GGTGA 1 cut(s) 66
AvaI CYCGRG 2 cut(s) 509, 947
AvaII GGWCC 1 cut(s) 1139
BaeGI GKGCMC 1 cut(s) 487
BalI TGGCCA 3 cut(s) 396, 863, 873
BbsI GAAGAC 1 cut(s) 339
Bbv12I GWGCWC 3 cut(s) 487, 822, 1241
BbvI GCAGC 4 cut(s) 47, 588, 904, 1143
BccI CCATC 3 cut(s) 926, 1130, 1186
BcgI CGANNNNNNTGC 2 cut(s) 645, 679
BciT130I CCWGG 3 cut(s) 815, 980, 1370
BclI TGATCA 1 cut(s) 756
BcoDI GTCTC 1 cut(s) 930
BfaI CTAG 2 cut(s) 911, 1411
BfmI CTRYAG 1 cut(s) 602
BfoI RGCGCY 1 cut(s) 1157
BfuAI ACCTGC 1 cut(s) 682
BglII AGATCT 1 cut(s) 721
BisI GCNGC 5 cut(s) 61, 602, 856, 893, 1157
BlpI GCTNAGC 1 cut(s) 618
BlsI GCNGC 5 cut(s) 62, 603, 857, 894, 1158
BmcAI AGTACT 1 cut(s) 712
Bme1390I CCNGG 3 cut(s) 815, 980, 1370
Bme18I GGWCC 1 cut(s) 1139
BmeT110I CYCGRG 2 cut(s) 509, 947
BmgBI CACGTC 2 cut(s) 106, 310
BmgT120I GGNCC 1 cut(s) 1139
BmrFI CCNGG 3 cut(s) 815, 980, 1370
BpiI GAAGAC 1 cut(s) 339
BplI GAGNNNNNCTC 4 cut(s) 1200, 1232, 1311, 1343
BpmI CTGGAG 1 cut(s) 836
Bpu1102I GCTNAGC 1 cut(s) 618
BsaAI YACGTR 1 cut(s) 166
BsaBI GATNNNNATC 2 cut(s) 456, 469
BsaJI CCNNGG 4 cut(s) 303, 813, 874, 946
BsaWI WCCGGW 4 cut(s) 116, 220, 1026, 1241
Bsc4I CCNNNNNNNGG 3 cut(s) 83, 948, 1148
Bse1I ACTGG 1 cut(s) 903
Bse3DI GCAATG 1 cut(s) 745
Bse8I GATNNNNATC 2 cut(s) 456, 469
BseBI CCWGG 3 cut(s) 815, 980, 1370
BseDI CCNNGG 4 cut(s) 303, 813, 874, 946
BseGI GGATG 3 cut(s) 138, 229, 1297
BseJI GATNNNNATC 2 cut(s) 456, 469
BseLI CCNNNNNNNGG 3 cut(s) 83, 948, 1148
BseMI GCAATG 1 cut(s) 745
BseMII CTCAG 3 cut(s) 452, 609, 813
BseNI ACTGG 1 cut(s) 903
BseRI GAGGAG 1 cut(s) 1202
BseSI GKGCMC 1 cut(s) 487
BseXI GCAGC 4 cut(s) 47, 588, 904, 1143
BseYI CCCAGC 1 cut(s) 1082
BsgI GTGCAG 1 cut(s) 1248
Bsh1236I CGCG 1 cut(s) 198
BshFI GGCC 7 cut(s) 87, 396, 687, 863, 873, 978, 1215
BsiHKAI GWGCWC 3 cut(s) 487, 822, 1241
BsiHKCI CYCGRG 2 cut(s) 509, 947
BsiSI CCGG 4 cut(s) 117, 221, 1027, 1242
BslFI GGGAC 2 cut(s) 796, 1019
BslI CCNNNNNNNGG 3 cut(s) 83, 948, 1148
BsmAI GTCTC 1 cut(s) 930
BsmFI GGGAC 2 cut(s) 796, 1019
BsmI GAATGC 2 cut(s) 697, 754
BsnI GGCC 7 cut(s) 87, 396, 687, 863, 873, 978, 1215
BsoBI CYCGRG 2 cut(s) 509, 947
Bsp1286I GDGCHC 3 cut(s) 487, 822, 1241
Bsp143I GATC 4 cut(s) 470, 721, 756, 1203
Bsp1720I GCTNAGC 1 cut(s) 618
Bsp19I CCATGG 2 cut(s) 303, 874
BspACI CCGC 4 cut(s) 196, 443, 855, 1219
BspANI GGCC 7 cut(s) 87, 396, 687, 863, 873, 978, 1215
BspCNI CTCAG 3 cut(s) 453, 610, 812
BspFNI CGCG 1 cut(s) 198
BspMAI CTGCAG 1 cut(s) 606
BspMI ACCTGC 1 cut(s) 682
BspPI GGATC 2 cut(s) 478, 1211
BsrDI GCAATG 1 cut(s) 745
BsrI ACTGG 1 cut(s) 903
BssECI CCNNGG 4 cut(s) 303, 813, 874, 946
BssMI GATC 4 cut(s) 470, 721, 756, 1203
BssT1I CCWWGG 2 cut(s) 303, 874
Bst2UI CCWGG 3 cut(s) 815, 980, 1370
Bst4CI ACNGT 1 cut(s) 340
Bst6I CTCTTC 1 cut(s) 567
BstBAI YACGTR 1 cut(s) 166
BstC8I GCNNGC 6 cut(s) 58, 65, 689, 964, 976, 1366
BstDEI CTNAG 3 cut(s) 461, 618, 799
BstDSI CCRYGG 2 cut(s) 303, 874
BstF5I GGATG 3 cut(s) 138, 229, 1297
BstFNI CGCG 1 cut(s) 198
BstH2I RGCGCY 1 cut(s) 1157
BstHHI GCGC 1 cut(s) 1156
BstKTI GATC 4 cut(s) 473, 724, 759, 1206
BstMAI GTCTC 1 cut(s) 930
BstMBI GATC 4 cut(s) 470, 721, 756, 1203
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstNI CCWGG 3 cut(s) 815, 980, 1370
BstNSI RCATGY 5 cut(s) 60, 660, 766, 966, 1059
BstSCI CCNGG 3 cut(s) 813, 978, 1368
BstSFI CTRYAG 1 cut(s) 602
BstSLI GKGCMC 1 cut(s) 487
BstSNI TACGTA 1 cut(s) 166
BstUI CGCG 1 cut(s) 198
BstV1I GCAGC 4 cut(s) 47, 588, 904, 1143
BstV2I GAAGAC 1 cut(s) 339
BstX2I RGATCY 2 cut(s) 470, 721
BstYI RGATCY 2 cut(s) 470, 721
BsuRI GGCC 7 cut(s) 87, 396, 687, 863, 873, 978, 1215
BtgI CCRYGG 2 cut(s) 303, 874
BtrI CACGTC 2 cut(s) 106, 310
BtsCI GGATG 3 cut(s) 138, 229, 1297
BtsI GCAGTG 1 cut(s) 585
BtsIMutI CAGTG 1 cut(s) 585
BveI ACCTGC 1 cut(s) 682
Cac8I GCNNGC 6 cut(s) 58, 65, 689, 964, 976, 1366
CaiI CAGNNNCTG 2 cut(s) 814, 1133
CfoI GCGC 1 cut(s) 1156
Cfr13I GGNCC 1 cut(s) 1139
Csp6I GTAC 3 cut(s) 218, 711, 843
CspCI CAANNNNNGTGG 2 cut(s) 313, 348
CviQI GTAC 3 cut(s) 218, 711, 843
DdeI CTNAG 3 cut(s) 461, 618, 799
DpnI GATC 4 cut(s) 472, 723, 758, 1205
DpnII GATC 4 cut(s) 470, 721, 756, 1203
DrdI GACNNNNNNGTC 1 cut(s) 343
DseDI GACNNNNNNGTC 1 cut(s) 343
EaeI YGGCCR 3 cut(s) 394, 861, 871
Eam1104I CTCTTC 1 cut(s) 567
EarI CTCTTC 1 cut(s) 567
Eco105I TACGTA 1 cut(s) 166
Eco130I CCWWGG 2 cut(s) 303, 874
Eco147I AGGCCT 1 cut(s) 1215
Eco32I GATATC 1 cut(s) 829
Eco47I GGWCC 1 cut(s) 1139
Eco47III AGCGCT 1 cut(s) 1155
Eco88I CYCGRG 2 cut(s) 509, 947
EcoRII CCWGG 3 cut(s) 813, 978, 1368
EcoRV GATATC 1 cut(s) 829
EcoT14I CCWWGG 2 cut(s) 303, 874
EcoT22I ATGCAT 1 cut(s) 1057
ErhI CCWWGG 2 cut(s) 303, 874
FaqI GGGAC 2 cut(s) 796, 1019
FauI CCCGC 1 cut(s) 203
FbaI TGATCA 1 cut(s) 756
FblI GTMKAC 1 cut(s) 1023
Fnu4HI GCNGC 5 cut(s) 61, 602, 856, 893, 1157
FokI GGATG 3 cut(s) 125, 236, 1304
Fsp4HI GCNGC 5 cut(s) 61, 602, 856, 893, 1157
FspBI CTAG 2 cut(s) 911, 1411
GlaI GCGC 1 cut(s) 1155
GluI GCNGC 5 cut(s) 61, 602, 856, 893, 1157
GsaI CCCAGC 1 cut(s) 1086
GsuI CTGGAG 1 cut(s) 836
HaeII RGCGCY 1 cut(s) 1157
HaeIII GGCC 7 cut(s) 87, 396, 687, 863, 873, 978, 1215
HapII CCGG 4 cut(s) 117, 221, 1027, 1242
HhaI GCGC 1 cut(s) 1156
Hin6I GCGC 1 cut(s) 1154
HinP1I GCGC 1 cut(s) 1154
HinfI GANTC 2 cut(s) 206, 1295
HpaII CCGG 4 cut(s) 117, 221, 1027, 1242
HphI GGTGA 1 cut(s) 66
Hpy166II GTNNAC 2 cut(s) 485, 1024
Hpy188I TCNGA 5 cut(s) 130, 178, 462, 1208, 1353
Hpy188III TCNNGA 2 cut(s) 416, 929
Hpy8I GTNNAC 2 cut(s) 485, 1024
Hpy99I CGWCG 1 cut(s) 720
HpyAV CCTTC 3 cut(s) 145, 952, 1205
HpyCH4III ACNGT 1 cut(s) 340
HpyCH4IV ACGT 3 cut(s) 105, 165, 309
HpyCH4V TGCA 9 cut(s) 485, 554, 604, 674, 697, 892, 966, 1055, 1229
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
HpyF3I CTNAG 3 cut(s) 461, 618, 799
HpySE526I ACGT 3 cut(s) 105, 165, 309
HspAI GCGC 1 cut(s) 1154
Ksp22I TGATCA 1 cut(s) 756
Kzo9I GATC 4 cut(s) 470, 721, 756, 1203
LmnI GCTCC 5 cut(s) 9, 72, 159, 817, 1151
Lsp1109I GCAGC 4 cut(s) 47, 588, 904, 1143
MaeI CTAG 2 cut(s) 911, 1411
MaeII ACGT 3 cut(s) 105, 165, 309
MaeIII GTNAC 4 cut(s) 106, 119, 334, 937
MalI GATC 4 cut(s) 472, 723, 758, 1205
MboI GATC 4 cut(s) 470, 721, 756, 1203
MboII GAAGA 4 cut(s) 339, 584, 654, 994
MflI RGATCY 2 cut(s) 470, 721
MhlI GDGCHC 3 cut(s) 487, 822, 1241
MlsI TGGCCA 3 cut(s) 396, 863, 873
MluCI AATT 4 cut(s) 319, 374, 424, 1356
MluNI TGGCCA 3 cut(s) 396, 863, 873
MmeI TCCRAC 3 cut(s) 429, 616, 1297
Mox20I TGGCCA 3 cut(s) 396, 863, 873
Mph1103I ATGCAT 1 cut(s) 1057
MroXI GAANNNNTTC 1 cut(s) 587
MscI TGGCCA 3 cut(s) 396, 863, 873
MseI TTAA 5 cut(s) 362, 677, 1113, 1161, 1398
MslI CAYNNNNRTG 4 cut(s) 308, 767, 863, 884
Msp20I TGGCCA 3 cut(s) 396, 863, 873
MspI CCGG 4 cut(s) 117, 221, 1027, 1242
MspR9I CCNGG 3 cut(s) 815, 980, 1370
Mva1269I GAATGC 2 cut(s) 697, 754
MvaI CCWGG 3 cut(s) 815, 980, 1370
MvnI CGCG 1 cut(s) 198
MwoI GCNNNNNNNGC 1 cut(s) 53
NcoI CCATGG 2 cut(s) 303, 874
NdeII GATC 4 cut(s) 470, 721, 756, 1203
NmuCI GTSAC 3 cut(s) 106, 119, 334
NsiI ATGCAT 1 cut(s) 1057
NspI RCATGY 5 cut(s) 60, 660, 766, 966, 1059
PaeI GCATGC 2 cut(s) 60, 966
PaqCI CACCTGC 1 cut(s) 682
PceI AGGCCT 1 cut(s) 1215
PciI ACATGT 1 cut(s) 762
PctI GAATGC 2 cut(s) 697, 754
PdmI GAANNNNTTC 1 cut(s) 587
PfeI GAWTC 2 cut(s) 206, 1295
PkrI GCNGC 5 cut(s) 62, 603, 857, 894, 1158
Ppu21I YACGTR 1 cut(s) 166
PscI ACATGT 1 cut(s) 762
Psp6I CCWGG 3 cut(s) 813, 978, 1368
PspFI CCCAGC 1 cut(s) 1082
PspGI CCWGG 3 cut(s) 813, 978, 1368
PspPI GGNCC 1 cut(s) 1139
PstI CTGCAG 1 cut(s) 606
PstNI CAGNNNCTG 2 cut(s) 814, 1133
PsuI RGATCY 2 cut(s) 470, 721
RsaI GTAC 3 cut(s) 219, 712, 844
RsaNI GTAC 3 cut(s) 218, 711, 843
RseI CAYNNNNRTG 4 cut(s) 308, 767, 863, 884
SaqAI TTAA 5 cut(s) 362, 677, 1113, 1161, 1398
SatI GCNGC 5 cut(s) 61, 602, 856, 893, 1157
Sau3AI GATC 4 cut(s) 470, 721, 756, 1203
Sau96I GGNCC 1 cut(s) 1139
ScaI AGTACT 1 cut(s) 712
ScrFI CCNGG 3 cut(s) 815, 980, 1370
SduI GDGCHC 3 cut(s) 487, 822, 1241
SfcI CTRYAG 1 cut(s) 602
SinI GGWCC 1 cut(s) 1139
SmiMI CAYNNNNRTG 4 cut(s) 308, 767, 863, 884
SnaBI TACGTA 1 cut(s) 166
SphI GCATGC 2 cut(s) 60, 966
Sse9I AATT 4 cut(s) 319, 374, 424, 1356
SseBI AGGCCT 1 cut(s) 1215
SsiI CCGC 4 cut(s) 196, 443, 855, 1219
SspMI CTAG 2 cut(s) 911, 1411
StuI AGGCCT 1 cut(s) 1215
StyD4I CCNGG 3 cut(s) 813, 978, 1368
StyI CCWWGG 2 cut(s) 303, 874
TaaI ACNGT 1 cut(s) 340
TaiI ACGT 3 cut(s) 108, 168, 312
TaqI TCGA 5 cut(s) 242, 665, 715, 1065, 1078
TasI AATT 4 cut(s) 319, 374, 424, 1356
TatI WGTACW 1 cut(s) 710
TauI GCSGC 1 cut(s) 858
TfiI GAWTC 2 cut(s) 206, 1295
Tru1I TTAA 5 cut(s) 362, 677, 1113, 1161, 1398
Tru9I TTAA 5 cut(s) 362, 677, 1113, 1161, 1398
TscAI CASTG 1 cut(s) 585
TseFI GTSAC 3 cut(s) 106, 119, 334
TseI GCWGC 4 cut(s) 60, 601, 892, 1156
Tsp45I GTSAC 3 cut(s) 106, 119, 334
TspDTI ATGAA 6 cut(s) 127, 380, 825, 881, 1028, 1338
TspRI CASTG 1 cut(s) 585
VneI GTGCAC 1 cut(s) 483
VpaK11BI GGWCC 1 cut(s) 1139
XapI RAATTY 2 cut(s) 374, 424
XceI RCATGY 5 cut(s) 60, 660, 766, 966, 1059
XmiI GTMKAC 1 cut(s) 1023
XmnI GAANNNNTTC 1 cut(s) 587
XspI CTAG 2 cut(s) 911, 1411
ZrmI AGTACT 1 cut(s) 712
Zsp2I ATGCAT 1 cut(s) 1057
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.