Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0001684

Physical Location & Seq

Genomic Coordinates Reverse (-)

11007069 .. 11007920

Gene Structure 852 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1135100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGCTCTACTACCCAACCTCCCACAACCACTACACCTTCACTTACGCTCTCAAGGCATGTTGCTTCCTCCATGATAACAACAAGAGCCGGGAAGTCCACGCCCGCGTCGTAAAAACCAAGCACTTTTCCGATACCTTCGTCCAAAACTCGTTGCTTCACTTCTACGTAACCCAAGTTGACATTGTATTTGCTACTTGGGTTTTCGATTCCATACAAAACCCTGATGTTGTTTCGTGGACTTCGATGATTTCGGGTCTTAACAAGTGTAGATTTGTGGAGGAAGCAATTGTTAAGTTTATGTCCATGGATGTGCCGCCTAATTCTACTACTCTTGTCATTGTCATGTCCACTTGTTCGAGTTTAGGAGCTTTAAAGTTTGGTAAATCTGTTCATGGATATTGTATGAGGAAGTTATTTGAAAGGAATGTTATTTTGGACAATGCAGTGTTGGATTTTTACATGAGATGTGGGTCTTTGGTGAGTGCACGGTGCCTGTTTGTAAATATGCCCAAAAGAGATGTGTATTCTTGGACTAGCATGGTGGGTGGTTATGCACAAAGAGGATTTTGTGACGAGGCAGTGAAGCTTTTTCAGGAGATGGTTCAGGGAGAGGAAGTTGAGCCTAATGAGGATACCATTGTAAATGTATTGTCAGCGTGTTCTTCGATTGGGGCATTGAGTTTAGGCCAGTGGGTAAATTCGTATATAAGTGCACGGCCAGATCTCGTGTTGAATGGCATTCTGGGAAATGCATTAATAAACATGTATGTAAAGTATGGGGAAGTAGGTATGGTAGTTTCGGTTTTTAAAACCCTGGTTTGCAAGGATCACATTTCGTGGAGTCCATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

284

Amino Acids

31.87

Weight (kDa)

7.05

Isoelectric Point (pI)

33.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	172 - 220	3.3e-07	PPR repeat family
PPR	PF01535	175 - 201	8.1e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001684)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g10870 FvH4_4g10872 FvH4_5g33630 FvH4_5g33630 FvH4_5g33630
malus_domestica	MD00G1175800.v1.1 MD00G1175900.v1.1 MD02G1110200.v1.1 MD02G1134900.v1.1 MD02G1135000.v1.1 MD02G1135100.v1.1 MD03G1186500.v1.1
prunus_persica	Prupe.4G247500_v2.0.a1 Prupe.5G045600_v2.0.a1
pyrus_communis	pycom03g13340 pycom03g13880
rosa_chinensis	RchiOBHm_Chr4g0406551 RchiOBHm_Chr4g0406561 RchiOBHm_Chr4g0406571 RchiOBHm_Chr7g0232221 RchiOBHm_Chr7g0232571
rosa_laevigata	RLG00000001323 RLG00000001326 RLG00000008766 RLG00000012933
rosa_multiflora	Rmu_sc0005505.1_g000001 Rmu_sc0020055.1_g000001 Rmu_ssc0000186.1_g000036
rosa_roxburghii	Rroxscaffold_3G00228190 Rroxscaffold_3G00228220 Rroxscaffold_3G00228230 Rroxscaffold_5G00351430
rosa_rugosa	Rorug04G0072200 Rorug07G0270300 Rorug07G0275100 Rorug07G0275100
rosa_samantha	Rh4AG139300 Rh4BG136400 Rh4CG146500 Rh4DG133700 Rh7AG429400 Rh7AG429600 Rh7BG399000 Rh7BG403100 Rh7BG403300 Rh7CG448200 Rh7CG448500
rosa_wichuraiana	Rw7G035240 Rw7G035490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	489
AccII	CGCG	1 cut(s)	105
AciI	CCGC	2 cut(s)	103, 314
AclWI	GGATC	1 cut(s)	834
AcoI	YGGCCR	1 cut(s)	716
AcsI	RAATTY	1 cut(s)	697
AflIII	ACRYGT	1 cut(s)	762
AgsI	TTSAA	2 cut(s)	419, 733
AjnI	CCWGG	1 cut(s)	813
AjuI	GAANNNNNNNTTGG	2 cut(s)	416, 448
AluBI	AGCT	2 cut(s)	368, 586
AluI	AGCT	2 cut(s)	368, 586
Alw21I	GWGCWC	2 cut(s)	487, 715
Alw44I	GTGCAC	2 cut(s)	483, 711
AlwI	GGATC	1 cut(s)	834
AoxI	GGCC	2 cut(s)	685, 716
ApaLI	GTGCAC	2 cut(s)	483, 711
ApoI	RAATTY	1 cut(s)	697
ArsI	GACNNNNNNTTYG	2 cut(s)	170, 202
AseI	ATTAAT	1 cut(s)	755
AsuC2I	CCSGG	1 cut(s)	89
AsuHPI	GGTGA	1 cut(s)	490
BaeGI	GKGCMC	2 cut(s)	487, 715
BaeI	ACNNNNGTAYC	4 cut(s)	123, 156, 624, 657
BanI	GGYRCC	1 cut(s)	489
BauI	CACGAG	1 cut(s)	725
Bbv12I	GWGCWC	2 cut(s)	487, 715
BccI	CCATC	1 cut(s)	592
BceAI	ACGGC	1 cut(s)	731
BciT130I	CCWGG	1 cut(s)	815
BciVI	GTATCC	1 cut(s)	625
BcnI	CCSGG	1 cut(s)	89
BfaI	CTAG	1 cut(s)	534
BfuI	GTATCC	1 cut(s)	625
BglII	AGATCT	1 cut(s)	721
BisI	GCNGC	1 cut(s)	314
BlsI	GCNGC	1 cut(s)	315
Bme1390I	CCNGG	2 cut(s)	89, 815
BmiI	GGNNCC	1 cut(s)	491
BmrFI	CCNGG	2 cut(s)	89, 815
BpuEI	CTTGAG	1 cut(s)	35
BpuMI	CCSGG	1 cut(s)	89
BsaAI	YACGTR	1 cut(s)	166
BsaJI	CCNNGG	2 cut(s)	303, 813
BsaXI	ACNNNNNCTCC	3 cut(s)	32, 600, 630
Bse1I	ACTGG	1 cut(s)	688
BseBI	CCWGG	1 cut(s)	815
BseDI	CCNNGG	2 cut(s)	303, 813
BseGI	GGATG	1 cut(s)	313
BseNI	ACTGG	1 cut(s)	688
BseSI	GKGCMC	2 cut(s)	487, 715
Bsh1236I	CGCG	1 cut(s)	105
BshFI	GGCC	2 cut(s)	687, 718
BshNI	GGYRCC	1 cut(s)	489
BsiHKAI	GWGCWC	2 cut(s)	487, 715
BsiSI	CCGG	1 cut(s)	88
BsmI	GAATGC	1 cut(s)	738
BsnI	GGCC	2 cut(s)	687, 718
Bsp1286I	GDGCHC	2 cut(s)	487, 715
Bsp143I	GATC	2 cut(s)	721, 826
Bsp19I	CCATGG	1 cut(s)	303
BspACI	CCGC	2 cut(s)	103, 314
BspANI	GGCC	2 cut(s)	687, 718
BspFNI	CGCG	1 cut(s)	105
BspLI	GGNNCC	1 cut(s)	491
BspPI	GGATC	1 cut(s)	834
BspT107I	GGYRCC	1 cut(s)	489
BsrI	ACTGG	1 cut(s)	688
BssECI	CCNNGG	2 cut(s)	303, 813
BssMI	GATC	2 cut(s)	721, 826
BssSI	CACGAG	1 cut(s)	725
BssT1I	CCWWGG	1 cut(s)	303
Bst2BI	CACGAG	1 cut(s)	725
Bst2UI	CCWGG	1 cut(s)	815
Bst4CI	ACNGT	1 cut(s)	489
BstBAI	YACGTR	1 cut(s)	166
BstC8I	GCNNGC	1 cut(s)	103
BstDSI	CCRYGG	1 cut(s)	303
BstF5I	GGATG	1 cut(s)	313
BstFNI	CGCG	1 cut(s)	105
BstKTI	GATC	2 cut(s)	724, 829
BstMBI	GATC	2 cut(s)	721, 826
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstNI	CCWGG	1 cut(s)	815
BstNSI	RCATGY	2 cut(s)	60, 766
BstSCI	CCNGG	2 cut(s)	87, 813
BstSLI	GKGCMC	2 cut(s)	487, 715
BstSNI	TACGTA	1 cut(s)	166
BstUI	CGCG	1 cut(s)	105
BstX2I	RGATCY	1 cut(s)	721
BstYI	RGATCY	1 cut(s)	721
BsuI	GTATCC	1 cut(s)	625
BsuRI	GGCC	2 cut(s)	687, 718
BtgI	CCRYGG	1 cut(s)	303
BtsCI	GGATG	1 cut(s)	313
BtsI	GCAGTG	2 cut(s)	450, 585
BtsIMutI	CAGTG	3 cut(s)	450, 585, 695
Cac8I	GCNNGC	1 cut(s)	103
CseI	GACGC	1 cut(s)	94
CviAII	CATG	8 cut(s)	57, 71, 304, 343, 392, 460, 538, 763
CviJI	RGCY	6 cut(s)	87, 368, 586, 622, 687, 718
CviKI_1	RGCY	6 cut(s)	87, 368, 586, 622, 687, 718
DpnI	GATC	2 cut(s)	723, 828
DpnII	GATC	2 cut(s)	721, 826
DraI	TTTAAA	2 cut(s)	372, 808
EaeI	YGGCCR	1 cut(s)	716
Eco105I	TACGTA	1 cut(s)	166
Eco130I	CCWWGG	1 cut(s)	303
EcoRII	CCWGG	1 cut(s)	813
EcoT14I	CCWWGG	1 cut(s)	303
EcoT22I	ATGCAT	1 cut(s)	754
ErhI	CCWWGG	1 cut(s)	303
FaeI	CATG	8 cut(s)	60, 74, 307, 346, 395, 463, 541, 766
FatI	CATG	8 cut(s)	56, 70, 303, 342, 391, 459, 537, 762
FauI	CCCGC	1 cut(s)	110
Fnu4HI	GCNGC	1 cut(s)	314
FokI	GGATG	1 cut(s)	320
Fsp4HI	GCNGC	1 cut(s)	314
FspBI	CTAG	1 cut(s)	534
GluI	GCNGC	1 cut(s)	314
HaeIII	GGCC	2 cut(s)	687, 718
HapII	CCGG	1 cut(s)	88
HgaI	GACGC	1 cut(s)	94
Hin1II	CATG	8 cut(s)	60, 74, 307, 346, 395, 463, 541, 766
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HindIII	AAGCTT	1 cut(s)	584
HinfI	GANTC	2 cut(s)	206, 841
HpaII	CCGG	1 cut(s)	88
HphI	GGTGA	1 cut(s)	490
Hpy166II	GTNNAC	6 cut(s)	97, 178, 237, 348, 485, 713
Hpy188I	TCNGA	1 cut(s)	130
Hpy188III	TCNNGA	1 cut(s)	593
Hpy8I	GTNNAC	6 cut(s)	97, 178, 237, 348, 485, 713
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	2 cut(s)	46, 145
HpyCH4III	ACNGT	1 cut(s)	489
HpyCH4IV	ACGT	1 cut(s)	165
HpyCH4V	TGCA	6 cut(s)	443, 485, 554, 713, 752, 822
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpySE526I	ACGT	1 cut(s)	165
Hsp92II	CATG	8 cut(s)	60, 74, 307, 346, 395, 463, 541, 766
Kzo9I	GATC	2 cut(s)	721, 826
LmnI	GCTCC	1 cut(s)	365
MaeI	CTAG	1 cut(s)	534
MaeII	ACGT	1 cut(s)	165
MaeIII	GTNAC	2 cut(s)	166, 569
MalI	GATC	2 cut(s)	723, 828
MboI	GATC	2 cut(s)	721, 826
MboII	GAAGA	1 cut(s)	654
MfeI	CAATTG	1 cut(s)	285
MflI	RGATCY	1 cut(s)	721
MhlI	GDGCHC	2 cut(s)	487, 715
MluCI	AATT	3 cut(s)	285, 319, 697
MlyI	GAGTC	1 cut(s)	850
MmeI	TCCRAC	1 cut(s)	429
MnlI	CCTC	8 cut(s)	28, 77, 271, 399, 554, 568, 604, 622
Mph1103I	ATGCAT	1 cut(s)	754
MseI	TTAA	5 cut(s)	258, 291, 371, 755, 807
MslI	CAYNNNNRTG	2 cut(s)	308, 341
MspI	CCGG	1 cut(s)	88
MspR9I	CCNGG	2 cut(s)	89, 815
MunI	CAATTG	1 cut(s)	285
Mva1269I	GAATGC	1 cut(s)	738
MvaI	CCWGG	1 cut(s)	815
MvnI	CGCG	1 cut(s)	105
MwoI	GCNNNNNNNGC	1 cut(s)	53
NciI	CCSGG	1 cut(s)	89
NcoI	CCATGG	1 cut(s)	303
NdeII	GATC	2 cut(s)	721, 826
NlaIII	CATG	8 cut(s)	60, 74, 307, 346, 395, 463, 541, 766
NlaIV	GGNNCC	1 cut(s)	491
NmuCI	GTSAC	1 cut(s)	569
NsiI	ATGCAT	1 cut(s)	754
NspI	RCATGY	2 cut(s)	60, 766
PciI	ACATGT	1 cut(s)	762
PcsI	WCGNNNNNNNCGW	2 cut(s)	105, 239
PctI	GAATGC	1 cut(s)	738
PfeI	GAWTC	1 cut(s)	206
PkrI	GCNGC	1 cut(s)	315
PleI	GAGTC	1 cut(s)	849
PpsI	GAGTC	1 cut(s)	849
Ppu21I	YACGTR	1 cut(s)	166
PscI	ACATGT	1 cut(s)	762
PshBI	ATTAAT	1 cut(s)	755
Psp6I	CCWGG	1 cut(s)	813
PspGI	CCWGG	1 cut(s)	813
PspN4I	GGNNCC	1 cut(s)	491
PsuI	RGATCY	1 cut(s)	721
RseI	CAYNNNNRTG	2 cut(s)	308, 341
SaqAI	TTAA	5 cut(s)	258, 291, 371, 755, 807
SatI	GCNGC	1 cut(s)	314
Sau3AI	GATC	2 cut(s)	721, 826
SchI	GAGTC	1 cut(s)	850
ScrFI	CCNGG	2 cut(s)	89, 815
SduI	GDGCHC	2 cut(s)	487, 715
SetI	ASST	7 cut(s)	20, 38, 137, 168, 370, 588, 790
SmiMI	CAYNNNNRTG	2 cut(s)	308, 341
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
SnaBI	TACGTA	1 cut(s)	166
Sse9I	AATT	3 cut(s)	285, 319, 697
SsiI	CCGC	2 cut(s)	103, 314
SspMI	CTAG	1 cut(s)	534
StyD4I	CCNGG	2 cut(s)	87, 813
StyI	CCWWGG	1 cut(s)	303
TaaI	ACNGT	1 cut(s)	489
TaiI	ACGT	1 cut(s)	168
TaqI	TCGA	4 cut(s)	204, 242, 356, 665
TasI	AATT	3 cut(s)	285, 319, 697
TauI	GCSGC	1 cut(s)	316
TfiI	GAWTC	1 cut(s)	206
Tru1I	TTAA	5 cut(s)	258, 291, 371, 755, 807
Tru9I	TTAA	5 cut(s)	258, 291, 371, 755, 807
TscAI	CASTG	3 cut(s)	450, 585, 695
TseFI	GTSAC	1 cut(s)	569
Tsp45I	GTSAC	1 cut(s)	569
TspDTI	ATGAA	1 cut(s)	380
TspRI	CASTG	3 cut(s)	450, 585, 695
VneI	GTGCAC	2 cut(s)	483, 711
VspI	ATTAAT	1 cut(s)	755
XapI	RAATTY	1 cut(s)	697
XceI	RCATGY	2 cut(s)	60, 766
XspI	CTAG	1 cut(s)	534
Zsp2I	ATGCAT	1 cut(s)	754

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.