RLG00000012933

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001684
Physical Location & Seq
Reverse (-)
24045517 .. 24047032
1516 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012933

Sequence Viewer

Length: 1404 bp
ATGGGACAACTAAACCAAATCCATGCGCTGCTGGTCAAAAATCCAAAACCCCAAGTTTTAGACCCCTGGCTGGGATATCTGGCAAACTCTTCAGCACCACAAAATGCCCTTTTTCTATATAACCAAATGCTCCACCACCCAACTTCCCATAACCACTACACATTTACTTATGCTCTAAAGGCATGCTGCTTGCTCCATTCACCCCATAAAGGCCAAGAAATCCAAGCCCACGTCACAAAATCTGGTTACATATCTGATACCTTCATCCAAAACTCTTTGCTACACTTTTACGTAATCCTATCTGACATTGTTTCTGCTACCCGCGTTTTTGATTCAATACCTGTACCGGCTGTTGTTTCCTGGACTTCGATGATTTCGGGTCTTTCCAAGTGTGGGTTTGTGGAGGAAGCCATTGTGAAGTTTATGTCCATGGACGTGAAGCCTAATTCTACTACTCTTGTGACTGTTTTGTCTTCTTGTTCTACTTTAAGAGCTTTGAAATTTGGTAAAGCCGTAAAGCTGTTCATGGCCATTTTTGAGGAACTTTCAGGAAAGGAATTTGATTTTGGACAATGCCGTTTTGGATTTCTATCTGAGATGTGGATATTTGGCGAGTGCAAGACACCTGGTGGAGAAGCTGAGCCTAATGAGGCTACCATTGTCAATGTATTGTCAGCATGTTCTTCGATTTGTGCATTAAGTTCAGGCCAGCAGGTGCATTCCTATATCAGTACTCGACGAGATCTCACGGCGAATGGCAATGTGGGGAATGCCTTGAACAACATGTATGTGAAGTGTGGAAACTTGGAAATGGCTGTCTCAGTTTTTCAGTCCCTGGAGCACAAAGATATCATTTCATGGAGTACCATAATATGCGGCATGGCCATGAATGGCCATGACATACACTTGTTGCAGCTCTTTTCCAGTATGCTAGTCAATGGGGTGTCTCCTGATGGTGTAACCTTCCTCGGGTTGTTATCAGCATGCAGTCATGCTGGCCTGGTAAATCAAGGGTTGATGTTCTTCAATGCTATGAAGAAAGTTTACCGGATTGTCCCTGAAACACAGCATTATGCGTGTCTGGTCGATATGTATGGTCGAGCTGGGCTATTAGAGGAAGCAGAGGCTTTTATTAAAGAAATGCCAACAGAAGCTGATGGTCCTGTTTGGGGAGCACTGCTTAATGCTTGTAAAATCTATGGGAATGAGGAGATGGTTGAGAGGATCAGAGAAGGCCTCCGCAATAGTGCAGGAGTGAGCACTGGAACTTATGCTCTGTTATCAAATGCTTATGCTAAACATGATAGGTGGGATGATTCTAATAAGGTTCGTGATGAAATGAGAGAGATGGGGTTGAAGGCACCACCAGGTCGTAGTTGGATTGAAATTGGTCCGTCCATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

468

Amino Acids

51.41

Weight (kDa)

6.24

Isoelectric Point (pI)

40.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 282 - 330 5e-06 PPR repeat family
E_motif PF20431 420 - 462 5.2e-10 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 703
AasI GACNNNNNNGTC 1 cut(s) 469
Acc36I ACCTGC 1 cut(s) 703
AccB1I GGYRCC 1 cut(s) 1360
AccII CGCG 1 cut(s) 324
AciI CCGC 3 cut(s) 322, 876, 1240
AclWI GGATC 1 cut(s) 1232
AcoI YGGCCR 3 cut(s) 528, 882, 892
AcsI RAATTY 2 cut(s) 500, 557
AcuI CTGAAG 1 cut(s) 75
AdeI CACNNNGTG 1 cut(s) 629
AfaI GTAC 3 cut(s) 345, 733, 865
AfiI CCNNNNNNNGG 6 cut(s) 70, 71, 209, 393, 969, 1169
AflIII ACRYGT 1 cut(s) 783
AgsI TTSAA 6 cut(s) 336, 499, 778, 1027, 1357, 1385
AjiI CACGTC 2 cut(s) 232, 436
AjnI CCWGG 6 cut(s) 65, 359, 625, 834, 999, 1366
AjuI GAANNNNNNNTTGG 2 cut(s) 549, 581
AluBI AGCT 6 cut(s) 494, 520, 638, 916, 1103, 1154
AluI AGCT 6 cut(s) 494, 520, 638, 916, 1103, 1154
Alw21I GWGCWC 3 cut(s) 843, 1177, 1262
Alw26I GTCTC 2 cut(s) 823, 951
AlwI GGATC 1 cut(s) 1232
AlwNI CAGNNNCTG 2 cut(s) 835, 1154
Ama87I CYCGRG 1 cut(s) 968
AoxI GGCC 7 cut(s) 211, 528, 706, 882, 892, 997, 1234
ApeKI GCWGC 3 cut(s) 28, 186, 913
ApoI RAATTY 2 cut(s) 500, 557
AspLEI GCGC 1 cut(s) 28
AspS9I GGNCC 2 cut(s) 1160, 1391
AsuHPI GGTGA 1 cut(s) 192
AvaI CYCGRG 1 cut(s) 968
AvaII GGWCC 2 cut(s) 1160, 1391
BalI TGGCCA 3 cut(s) 530, 884, 894
BanI GGYRCC 1 cut(s) 1360
BarI GAAGNNNNNNTAC 2 cut(s) 1028, 1060
BbsI GAAGAC 1 cut(s) 465
Bbv12I GWGCWC 3 cut(s) 843, 1177, 1262
BbvI GCAGC 3 cut(s) 15, 173, 925
BccI CCATC 4 cut(s) 947, 1151, 1207, 1342
BceAI ACGGC 3 cut(s) 497, 561, 765
BcgI CGANNNNNNTGC 2 cut(s) 666, 700
BciT130I CCWGG 6 cut(s) 67, 361, 627, 836, 1001, 1368
BcoDI GTCTC 2 cut(s) 823, 951
BfaI CTAG 1 cut(s) 932
BfuAI ACCTGC 1 cut(s) 703
BglII AGATCT 1 cut(s) 742
BisI GCNGC 4 cut(s) 29, 187, 877, 914
BlpI GCTNAGC 1 cut(s) 639
BlsI GCNGC 4 cut(s) 30, 188, 878, 915
BmcAI AGTACT 1 cut(s) 733
Bme1390I CCNGG 6 cut(s) 67, 361, 627, 836, 1001, 1368
Bme18I GGWCC 2 cut(s) 1160, 1391
BmeT110I CYCGRG 1 cut(s) 968
BmgBI CACGTC 2 cut(s) 232, 436
BmgT120I GGNCC 2 cut(s) 1160, 1391
BmiI GGNNCC 1 cut(s) 1362
BmrFI CCNGG 6 cut(s) 67, 361, 627, 836, 1001, 1368
BpiI GAAGAC 1 cut(s) 465
BplI GAGNNNNNCTC 2 cut(s) 1221, 1253
BpmI CTGGAG 1 cut(s) 857
Bpu1102I GCTNAGC 1 cut(s) 639
BsaAI YACGTR 1 cut(s) 292
BsaBI GATNNNNATC 1 cut(s) 589
BsaJI CCNNGG 4 cut(s) 65, 429, 834, 967
BsaWI WCCGGW 1 cut(s) 1047
Bsc4I CCNNNNNNNGG 6 cut(s) 70, 71, 209, 393, 969, 1169
Bse118I RCCGGY 1 cut(s) 346
Bse1I ACTGG 2 cut(s) 924, 1267
Bse3DI GCAATG 1 cut(s) 766
Bse8I GATNNNNATC 1 cut(s) 589
BseBI CCWGG 6 cut(s) 67, 361, 627, 836, 1001, 1368
BseDI CCNNGG 4 cut(s) 65, 429, 834, 967
BseGI GGATG 2 cut(s) 264, 1318
BseJI GATNNNNATC 1 cut(s) 589
BseLI CCNNNNNNNGG 6 cut(s) 70, 71, 209, 393, 969, 1169
BseMI GCAATG 1 cut(s) 766
BseMII CTCAG 3 cut(s) 585, 630, 834
BseNI ACTGG 2 cut(s) 924, 1267
BseRI GAGGAG 1 cut(s) 1223
BseXI GCAGC 3 cut(s) 15, 173, 925
BseYI CCCAGC 2 cut(s) 70, 1103
BsgI GTGCAG 1 cut(s) 1269
Bsh1236I CGCG 1 cut(s) 324
BshFI GGCC 7 cut(s) 213, 530, 708, 884, 894, 999, 1236
BshNI GGYRCC 1 cut(s) 1360
BsiHKAI GWGCWC 3 cut(s) 843, 1177, 1262
BsiHKCI CYCGRG 1 cut(s) 968
BsiSI CCGG 2 cut(s) 347, 1048
BslFI GGGAC 3 cut(s) 18, 817, 1040
BslI CCNNNNNNNGG 6 cut(s) 70, 71, 209, 393, 969, 1169
BsmAI GTCTC 2 cut(s) 823, 951
BsmFI GGGAC 3 cut(s) 18, 817, 1040
BsmI GAATGC 2 cut(s) 718, 775
BsnI GGCC 7 cut(s) 213, 530, 708, 884, 894, 999, 1236
BsoBI CYCGRG 1 cut(s) 968
Bsp1286I GDGCHC 3 cut(s) 843, 1177, 1262
Bsp143I GATC 2 cut(s) 742, 1224
Bsp1720I GCTNAGC 1 cut(s) 639
Bsp19I CCATGG 1 cut(s) 429
BspACI CCGC 3 cut(s) 322, 876, 1240
BspANI GGCC 7 cut(s) 213, 530, 708, 884, 894, 999, 1236
BspCNI CTCAG 3 cut(s) 586, 631, 833
BspFNI CGCG 1 cut(s) 324
BspLI GGNNCC 1 cut(s) 1362
BspMI ACCTGC 1 cut(s) 703
BspPI GGATC 1 cut(s) 1232
BspT107I GGYRCC 1 cut(s) 1360
BsrDI GCAATG 1 cut(s) 766
BsrFI RCCGGY 1 cut(s) 346
BsrI ACTGG 2 cut(s) 924, 1267
BssAI RCCGGY 1 cut(s) 346
BssECI CCNNGG 4 cut(s) 65, 429, 834, 967
BssMI GATC 2 cut(s) 742, 1224
BssT1I CCWWGG 1 cut(s) 429
Bst2UI CCWGG 6 cut(s) 67, 361, 627, 836, 1001, 1368
Bst4CI ACNGT 1 cut(s) 466
Bst6I CTCTTC 1 cut(s) 94
BstBAI YACGTR 1 cut(s) 292
BstC8I GCNNGC 5 cut(s) 184, 191, 710, 985, 997
BstDEI CTNAG 3 cut(s) 594, 639, 820
BstDSI CCRYGG 1 cut(s) 429
BstF5I GGATG 2 cut(s) 264, 1318
BstFNI CGCG 1 cut(s) 324
BstHHI GCGC 1 cut(s) 28
BstKTI GATC 2 cut(s) 745, 1227
BstMAI GTCTC 2 cut(s) 823, 951
BstMBI GATC 2 cut(s) 742, 1224
BstMWI GCNNNNNNNGC 1 cut(s) 179
BstNI CCWGG 6 cut(s) 67, 361, 627, 836, 1001, 1368
BstNSI RCATGY 4 cut(s) 186, 681, 787, 987
BstSCI CCNGG 6 cut(s) 65, 359, 625, 834, 999, 1366
BstSNI TACGTA 1 cut(s) 292
BstUI CGCG 1 cut(s) 324
BstV1I GCAGC 3 cut(s) 15, 173, 925
BstV2I GAAGAC 1 cut(s) 465
BstX2I RGATCY 1 cut(s) 742
BstYI RGATCY 1 cut(s) 742
BsuRI GGCC 7 cut(s) 213, 530, 708, 884, 894, 999, 1236
BtgI CCRYGG 1 cut(s) 429
BtrI CACGTC 2 cut(s) 232, 436
BtsCI GGATG 2 cut(s) 264, 1318
BtsI GCAGTG 1 cut(s) 1175
BtsIMutI CAGTG 2 cut(s) 1175, 1260
BveI ACCTGC 1 cut(s) 703
Cac8I GCNNGC 5 cut(s) 184, 191, 710, 985, 997
CaiI CAGNNNCTG 2 cut(s) 835, 1154
CfoI GCGC 1 cut(s) 28
Cfr10I RCCGGY 1 cut(s) 346
Cfr13I GGNCC 2 cut(s) 1160, 1391
CsiI ACCWGGT 2 cut(s) 625, 1366
Csp6I GTAC 3 cut(s) 344, 732, 864
CviQI GTAC 3 cut(s) 344, 732, 864
DdeI CTNAG 3 cut(s) 594, 639, 820
DpnI GATC 2 cut(s) 744, 1226
DpnII GATC 2 cut(s) 742, 1224
DraIII CACNNNGTG 1 cut(s) 629
DrdI GACNNNNNNGTC 1 cut(s) 469
DseDI GACNNNNNNGTC 1 cut(s) 469
EaeI YGGCCR 3 cut(s) 528, 882, 892
Eam1104I CTCTTC 1 cut(s) 94
EarI CTCTTC 1 cut(s) 94
Eco105I TACGTA 1 cut(s) 292
Eco130I CCWWGG 1 cut(s) 429
Eco147I AGGCCT 1 cut(s) 1236
Eco32I GATATC 2 cut(s) 77, 850
Eco47I GGWCC 2 cut(s) 1160, 1391
Eco57I CTGAAG 1 cut(s) 75
Eco88I CYCGRG 1 cut(s) 968
EcoRII CCWGG 6 cut(s) 65, 359, 625, 834, 999, 1366
EcoRV GATATC 2 cut(s) 77, 850
EcoT14I CCWWGG 1 cut(s) 429
ErhI CCWWGG 1 cut(s) 429
FaqI GGGAC 3 cut(s) 18, 817, 1040
FauI CCCGC 1 cut(s) 329
Fnu4HI GCNGC 4 cut(s) 29, 187, 877, 914
FokI GGATG 2 cut(s) 251, 1325
Fsp4HI GCNGC 4 cut(s) 29, 187, 877, 914
FspBI CTAG 1 cut(s) 932
GlaI GCGC 1 cut(s) 27
GluI GCNGC 4 cut(s) 29, 187, 877, 914
GsaI CCCAGC 2 cut(s) 74, 1107
GsuI CTGGAG 1 cut(s) 857
HaeIII GGCC 7 cut(s) 213, 530, 708, 884, 894, 999, 1236
HapII CCGG 2 cut(s) 347, 1048
HhaI GCGC 1 cut(s) 28
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
HinfI GANTC 2 cut(s) 332, 1316
HpaII CCGG 2 cut(s) 347, 1048
HphI GGTGA 1 cut(s) 192
Hpy166II GTNNAC 1 cut(s) 1045
Hpy188I TCNGA 4 cut(s) 256, 304, 595, 1229
Hpy188III TCNNGA 3 cut(s) 549, 950, 1331
Hpy8I GTNNAC 1 cut(s) 1045
Hpy99I CGWCG 1 cut(s) 741
HpyAV CCTTC 4 cut(s) 271, 973, 1226, 1351
HpyCH4III ACNGT 1 cut(s) 466
HpyCH4IV ACGT 3 cut(s) 231, 291, 435
HpyCH4V TGCA 6 cut(s) 618, 695, 718, 913, 987, 1250
HpyF10VI GCNNNNNNNGC 1 cut(s) 179
HpyF3I CTNAG 3 cut(s) 594, 639, 820
HpySE526I ACGT 3 cut(s) 231, 291, 435
HspAI GCGC 1 cut(s) 26
Kzo9I GATC 2 cut(s) 742, 1224
LmnI GCTCC 4 cut(s) 135, 198, 838, 1172
Lsp1109I GCAGC 3 cut(s) 15, 173, 925
MabI ACCWGGT 2 cut(s) 625, 1366
MaeI CTAG 1 cut(s) 932
MaeII ACGT 3 cut(s) 231, 291, 435
MaeIII GTNAC 4 cut(s) 232, 245, 460, 958
MalI GATC 2 cut(s) 744, 1226
MboI GATC 2 cut(s) 742, 1224
MboII GAAGA 5 cut(s) 81, 465, 675, 1015, 1048
MflI RGATCY 1 cut(s) 742
MhlI GDGCHC 3 cut(s) 843, 1177, 1262
MlsI TGGCCA 3 cut(s) 530, 884, 894
MluCI AATT 4 cut(s) 445, 500, 557, 1386
MluNI TGGCCA 3 cut(s) 530, 884, 894
MmeI TCCRAC 1 cut(s) 1358
MnlI CCTC 9 cut(s) 397, 532, 643, 977, 1108, 1117, 1201, 1215, 1247
Mox20I TGGCCA 3 cut(s) 530, 884, 894
MscI TGGCCA 3 cut(s) 530, 884, 894
MseI TTAA 4 cut(s) 488, 698, 1134, 1182
MslI CAYNNNNRTG 3 cut(s) 434, 788, 884
Msp20I TGGCCA 3 cut(s) 530, 884, 894
MspI CCGG 2 cut(s) 347, 1048
MspR9I CCNGG 6 cut(s) 67, 361, 627, 836, 1001, 1368
Mva1269I GAATGC 2 cut(s) 718, 775
MvaI CCWGG 6 cut(s) 67, 361, 627, 836, 1001, 1368
MvnI CGCG 1 cut(s) 324
MwoI GCNNNNNNNGC 1 cut(s) 179
NcoI CCATGG 1 cut(s) 429
NdeII GATC 2 cut(s) 742, 1224
NlaIV GGNNCC 1 cut(s) 1362
NmuCI GTSAC 2 cut(s) 232, 460
NspI RCATGY 4 cut(s) 186, 681, 787, 987
PaeI GCATGC 2 cut(s) 186, 987
PaqCI CACCTGC 1 cut(s) 703
PceI AGGCCT 1 cut(s) 1236
PciI ACATGT 1 cut(s) 783
PctI GAATGC 2 cut(s) 718, 775
PfeI GAWTC 2 cut(s) 332, 1316
PfoI TCCNGGA 1 cut(s) 359
PkrI GCNGC 4 cut(s) 30, 188, 878, 915
Ppu21I YACGTR 1 cut(s) 292
PscI ACATGT 1 cut(s) 783
Psp6I CCWGG 6 cut(s) 65, 359, 625, 834, 999, 1366
PspFI CCCAGC 2 cut(s) 70, 1103
PspGI CCWGG 6 cut(s) 65, 359, 625, 834, 999, 1366
PspN4I GGNNCC 1 cut(s) 1362
PspPI GGNCC 2 cut(s) 1160, 1391
PstNI CAGNNNCTG 2 cut(s) 835, 1154
PsuI RGATCY 1 cut(s) 742
RsaI GTAC 3 cut(s) 345, 733, 865
RsaNI GTAC 3 cut(s) 344, 732, 864
RseI CAYNNNNRTG 3 cut(s) 434, 788, 884
SaqAI TTAA 4 cut(s) 488, 698, 1134, 1182
SatI GCNGC 4 cut(s) 29, 187, 877, 914
Sau3AI GATC 2 cut(s) 742, 1224
Sau96I GGNCC 2 cut(s) 1160, 1391
ScaI AGTACT 1 cut(s) 733
ScrFI CCNGG 6 cut(s) 67, 361, 627, 836, 1001, 1368
SduI GDGCHC 3 cut(s) 843, 1177, 1262
SexAI ACCWGGT 2 cut(s) 625, 1366
SinI GGWCC 2 cut(s) 1160, 1391
SmiMI CAYNNNNRTG 3 cut(s) 434, 788, 884
SnaBI TACGTA 1 cut(s) 292
SphI GCATGC 2 cut(s) 186, 987
Sse9I AATT 4 cut(s) 445, 500, 557, 1386
SseBI AGGCCT 1 cut(s) 1236
SsiI CCGC 3 cut(s) 322, 876, 1240
SspMI CTAG 1 cut(s) 932
StuI AGGCCT 1 cut(s) 1236
StyD4I CCNGG 6 cut(s) 65, 359, 625, 834, 999, 1366
StyI CCWWGG 1 cut(s) 429
TaaI ACNGT 1 cut(s) 466
TaiI ACGT 3 cut(s) 234, 294, 438
TaqI TCGA 5 cut(s) 368, 686, 736, 1086, 1099
TasI AATT 4 cut(s) 445, 500, 557, 1386
TatI WGTACW 1 cut(s) 731
TauI GCSGC 1 cut(s) 879
TfiI GAWTC 2 cut(s) 332, 1316
Tru1I TTAA 4 cut(s) 488, 698, 1134, 1182
Tru9I TTAA 4 cut(s) 488, 698, 1134, 1182
TscAI CASTG 2 cut(s) 1182, 1267
TseFI GTSAC 2 cut(s) 232, 460
TseI GCWGC 3 cut(s) 28, 186, 913
Tsp45I GTSAC 2 cut(s) 232, 460
TspDTI ATGAA 6 cut(s) 253, 514, 846, 902, 1049, 1350
TspGWI ACGGA 1 cut(s) 1383
TspRI CASTG 2 cut(s) 1182, 1267
VpaK11BI GGWCC 2 cut(s) 1160, 1391
XapI RAATTY 2 cut(s) 500, 557
XceI RCATGY 4 cut(s) 186, 681, 787, 987
XcmI CCANNNNNNNNNTGG 1 cut(s) 1374
XspI CTAG 1 cut(s) 932
ZrmI AGTACT 1 cut(s) 733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.