Rh7BG403100

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0001684
Physical Location & Seq
Reverse (-)
44940673 .. 44943458
2786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG403100.1

Sequence Viewer

Length: 336 bp
ATGAAACTTTTCCAACAACTGCTGCAGGGCGGGGTAGCTGAGCCTAATGAGGCTACCATTGTCAATGTATTGTCAGCATGTTCATCGATTTGTGCATTGAGTTCAGGCCAGCAGGTGCATCATCAGTACTCGACTAGATCTCATGGTGAATGGCAATGTGGGAAATGCGTTAATGAACATGTATGTCAACCTGTCAGGTTTAGACGTGGGAGGAAACAAGGTTTAATATTCAGATTGTTTCAGGATTTGAACAAGTTGGGGAATTTGAGTGGTTATAGCTTTGGAGGTCCAAAATTCCAAATAGTTAGGTCAATTTGTTTTGCAAGGGAAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

111

Amino Acids

12.43

Weight (kDa)

9.45

Isoelectric Point (pI)

37.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 103
Acc36I ACCTGC 1 cut(s) 103
AciI CCGC 1 cut(s) 30
AcsI RAATTY 2 cut(s) 262, 293
AfaI GTAC 1 cut(s) 128
AflIII ACRYGT 1 cut(s) 178
AgsI TTSAA 1 cut(s) 250
AjiI CACGTC 1 cut(s) 206
AluBI AGCT 2 cut(s) 38, 279
AluI AGCT 2 cut(s) 38, 279
AoxI GGCC 1 cut(s) 106
ApeKI GCWGC 1 cut(s) 22
ApoI RAATTY 2 cut(s) 262, 293
Asp700I GAANNNNTTC 1 cut(s) 8
AspS9I GGNCC 1 cut(s) 287
AsuHPI GGTGA 1 cut(s) 158
AvaII GGWCC 1 cut(s) 287
BbvI GCAGC 1 cut(s) 9
BcgI CGANNNNNNTGC 2 cut(s) 66, 100
BfaI CTAG 1 cut(s) 135
BfmI CTRYAG 1 cut(s) 23
BfuAI ACCTGC 1 cut(s) 103
BglII AGATCT 1 cut(s) 137
BisI GCNGC 1 cut(s) 23
BlpI GCTNAGC 1 cut(s) 39
BlsI GCNGC 1 cut(s) 24
BmcAI AGTACT 1 cut(s) 128
Bme18I GGWCC 1 cut(s) 287
BmgBI CACGTC 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 287
BmsI GCATC 1 cut(s) 127
Bpu1102I GCTNAGC 1 cut(s) 39
Bsa29I ATCGAT 1 cut(s) 86
Bse3DI GCAATG 1 cut(s) 161
BseCI ATCGAT 1 cut(s) 86
BseMI GCAATG 1 cut(s) 161
BseMII CTCAG 1 cut(s) 30
BseXI GCAGC 1 cut(s) 9
BshFI GGCC 1 cut(s) 108
BshVI ATCGAT 1 cut(s) 86
BsnI GGCC 1 cut(s) 108
Bsp143I GATC 1 cut(s) 137
Bsp1720I GCTNAGC 1 cut(s) 39
BspACI CCGC 1 cut(s) 30
BspANI GGCC 1 cut(s) 108
BspCNI CTCAG 1 cut(s) 31
BspDI ATCGAT 1 cut(s) 86
BspMAI CTGCAG 1 cut(s) 27
BspMI ACCTGC 1 cut(s) 103
BsrDI GCAATG 1 cut(s) 161
BssMI GATC 1 cut(s) 137
BstC8I GCNNGC 1 cut(s) 110
BstDEI CTNAG 1 cut(s) 39
BstKTI GATC 1 cut(s) 140
BstMBI GATC 1 cut(s) 137
BstNSI RCATGY 2 cut(s) 81, 182
BstSFI CTRYAG 1 cut(s) 23
BstV1I GCAGC 1 cut(s) 9
BstX2I RGATCY 1 cut(s) 137
BstYI RGATCY 1 cut(s) 137
Bsu15I ATCGAT 1 cut(s) 86
BsuRI GGCC 1 cut(s) 108
BsuTUI ATCGAT 1 cut(s) 86
BtrI CACGTC 1 cut(s) 206
BveI ACCTGC 1 cut(s) 103
Cac8I GCNNGC 1 cut(s) 110
Cfr13I GGNCC 1 cut(s) 287
ClaI ATCGAT 1 cut(s) 86
Csp6I GTAC 1 cut(s) 127
CviAII CATG 3 cut(s) 78, 143, 179
CviJI RGCY 5 cut(s) 38, 43, 53, 108, 279
CviKI_1 RGCY 5 cut(s) 38, 43, 53, 108, 279
CviQI GTAC 1 cut(s) 127
DdeI CTNAG 1 cut(s) 39
DpnI GATC 1 cut(s) 139
DpnII GATC 1 cut(s) 137
Eco47I GGWCC 1 cut(s) 287
FaeI CATG 3 cut(s) 81, 146, 182
FaiI YATR 6 cut(s) 79, 144, 180, 184, 276, 334
FatI CATG 3 cut(s) 77, 142, 178
FauI CCCGC 1 cut(s) 23
Fnu4HI GCNGC 1 cut(s) 23
Fsp4HI GCNGC 1 cut(s) 23
FspBI CTAG 1 cut(s) 135
GluI GCNGC 1 cut(s) 23
HaeIII GGCC 1 cut(s) 108
Hin1II CATG 3 cut(s) 81, 146, 182
HincII GTYRAC 1 cut(s) 188
HindII GTYRAC 1 cut(s) 188
HphI GGTGA 1 cut(s) 158
Hpy166II GTNNAC 1 cut(s) 188
Hpy188I TCNGA 1 cut(s) 233
Hpy188III TCNNGA 1 cut(s) 242
Hpy8I GTNNAC 1 cut(s) 188
HpyCH4IV ACGT 1 cut(s) 205
HpyCH4V TGCA 4 cut(s) 25, 95, 118, 323
HpyF3I CTNAG 1 cut(s) 39
HpySE526I ACGT 1 cut(s) 205
Hsp92II CATG 3 cut(s) 81, 146, 182
Kzo9I GATC 1 cut(s) 137
LpnPI CCDG 7 cut(s) 11, 90, 98, 122, 181, 204, 227
Lsp1109I GCAGC 1 cut(s) 9
LweI GCATC 1 cut(s) 127
MaeI CTAG 1 cut(s) 135
MaeII ACGT 1 cut(s) 205
MalI GATC 1 cut(s) 139
MboI GATC 1 cut(s) 137
MflI RGATCY 1 cut(s) 137
MluCI AATT 3 cut(s) 262, 293, 312
MmeI TCCRAC 1 cut(s) 37
MnlI CCTC 3 cut(s) 43, 204, 278
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 2 cut(s) 171, 224
NdeII GATC 1 cut(s) 137
NlaIII CATG 3 cut(s) 81, 146, 182
NspI RCATGY 2 cut(s) 81, 182
PaqCI CACCTGC 1 cut(s) 103
PciI ACATGT 1 cut(s) 178
PdmI GAANNNNTTC 1 cut(s) 8
PkrI GCNGC 1 cut(s) 24
PscI ACATGT 1 cut(s) 178
PspPI GGNCC 1 cut(s) 287
PstI CTGCAG 1 cut(s) 27
PsuI RGATCY 1 cut(s) 137
RsaI GTAC 1 cut(s) 128
RsaNI GTAC 1 cut(s) 127
SaqAI TTAA 2 cut(s) 171, 224
SatI GCNGC 1 cut(s) 23
Sau3AI GATC 1 cut(s) 137
Sau96I GGNCC 1 cut(s) 287
ScaI AGTACT 1 cut(s) 128
SetI ASST 9 cut(s) 40, 117, 193, 200, 208, 223, 281, 289, 311
SfaNI GCATC 1 cut(s) 127
SfcI CTRYAG 1 cut(s) 23
SinI GGWCC 1 cut(s) 287
Sse9I AATT 3 cut(s) 262, 293, 312
SsiI CCGC 1 cut(s) 30
SspI AATATT 1 cut(s) 228
SspMI CTAG 1 cut(s) 135
TaiI ACGT 1 cut(s) 208
TaqI TCGA 2 cut(s) 86, 131
TasI AATT 3 cut(s) 262, 293, 312
TatI WGTACW 1 cut(s) 126
Tru1I TTAA 2 cut(s) 171, 224
Tru9I TTAA 2 cut(s) 171, 224
TseI GCWGC 1 cut(s) 22
TspDTI ATGAA 3 cut(s) 17, 72, 189
VpaK11BI GGWCC 1 cut(s) 287
XapI RAATTY 2 cut(s) 262, 293
XceI RCATGY 2 cut(s) 81, 182
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 1 cut(s) 135
ZrmI AGTACT 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.