Rh7CG448200

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001684
Physical Location & Seq
Reverse (-)
58935671 .. 58936000
330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG448200.1

Sequence Viewer

Length: 330 bp
ATGCCCAAGCGAGATGTGGTTTCGTGGACTATCATGGTGGGTGGCTATGCGCAAAGAGGTATTTGTGAAGAGGCAATGAAACTTTTCCAACAACTGCTGCAGGGCGGGGTAGCTGAGCCTAATGAGGCTACCATTGTCAATGTATTGTCAGCATGTTCATCGATTTGTGCATTGAGTTCAGGCCAGCAGGTGCATTCCTACATCAGTACTCGACTAGATCTCATGGTGAATGGCAATGTGGGAAATGCGTTAATGAACATGTATGTCAGCCTGTCAGGTGTGGAAATTGGGTATGGCTATTTCGGTTTTTTAAGGCCCTGGAGTGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

109

Amino Acids

11.78

Weight (kDa)

5.64

Isoelectric Point (pI)

34.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 4 - 52 1e-07 PPR repeat family
PPR PF01535 7 - 37 4.2e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 178
Acc16I TGCGCA 1 cut(s) 51
Acc36I ACCTGC 1 cut(s) 178
AciI CCGC 1 cut(s) 105
AfaI GTAC 1 cut(s) 208
AfiI CCNNNNNNNGG 1 cut(s) 323
AflIII ACRYGT 1 cut(s) 258
AjnI CCWGG 1 cut(s) 317
AluBI AGCT 1 cut(s) 113
AluI AGCT 1 cut(s) 113
AoxI GGCC 2 cut(s) 181, 314
ApeKI GCWGC 1 cut(s) 97
Asp700I GAANNNNTTC 1 cut(s) 83
AspLEI GCGC 1 cut(s) 52
AspS9I GGNCC 1 cut(s) 315
AsuHPI GGTGA 1 cut(s) 238
BbvI GCAGC 1 cut(s) 84
BcgI CGANNNNNNTGC 2 cut(s) 141, 175
BciT130I CCWGG 1 cut(s) 319
BfaI CTAG 1 cut(s) 215
BfmI CTRYAG 1 cut(s) 98
BfuAI ACCTGC 1 cut(s) 178
BglII AGATCT 1 cut(s) 217
BisI GCNGC 1 cut(s) 98
BlpI GCTNAGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 99
BmcAI AGTACT 1 cut(s) 208
Bme1390I CCNGG 1 cut(s) 319
BmgT120I GGNCC 1 cut(s) 315
BmrFI CCNGG 1 cut(s) 319
Bpu1102I GCTNAGC 1 cut(s) 114
Bsa29I ATCGAT 1 cut(s) 161
BsaJI CCNNGG 1 cut(s) 317
Bsc4I CCNNNNNNNGG 1 cut(s) 323
Bse3DI GCAATG 2 cut(s) 81, 241
BseBI CCWGG 1 cut(s) 319
BseCI ATCGAT 1 cut(s) 161
BseDI CCNNGG 1 cut(s) 317
BseLI CCNNNNNNNGG 1 cut(s) 323
BseMI GCAATG 2 cut(s) 81, 241
BseMII CTCAG 1 cut(s) 105
BseXI GCAGC 1 cut(s) 84
BshFI GGCC 2 cut(s) 183, 316
BshVI ATCGAT 1 cut(s) 161
BslI CCNNNNNNNGG 1 cut(s) 323
BsmI GAATGC 1 cut(s) 193
BsnI GGCC 2 cut(s) 183, 316
Bsp143I GATC 1 cut(s) 217
Bsp1720I GCTNAGC 1 cut(s) 114
BspACI CCGC 1 cut(s) 105
BspANI GGCC 2 cut(s) 183, 316
BspCNI CTCAG 1 cut(s) 106
BspDI ATCGAT 1 cut(s) 161
BspMAI CTGCAG 1 cut(s) 102
BspMI ACCTGC 1 cut(s) 178
BsrDI GCAATG 2 cut(s) 81, 241
BssECI CCNNGG 1 cut(s) 317
BssMI GATC 1 cut(s) 217
Bst2UI CCWGG 1 cut(s) 319
Bst6I CTCTTC 1 cut(s) 63
BstC8I GCNNGC 1 cut(s) 185
BstDEI CTNAG 1 cut(s) 114
BstHHI GCGC 1 cut(s) 52
BstKTI GATC 1 cut(s) 220
BstMBI GATC 1 cut(s) 217
BstNI CCWGG 1 cut(s) 319
BstNSI RCATGY 2 cut(s) 156, 262
BstSCI CCNGG 1 cut(s) 317
BstSFI CTRYAG 1 cut(s) 98
BstV1I GCAGC 1 cut(s) 84
BstX2I RGATCY 1 cut(s) 217
BstYI RGATCY 1 cut(s) 217
Bsu15I ATCGAT 1 cut(s) 161
BsuRI GGCC 2 cut(s) 183, 316
BsuTUI ATCGAT 1 cut(s) 161
BveI ACCTGC 1 cut(s) 178
Cac8I GCNNGC 1 cut(s) 185
CfoI GCGC 1 cut(s) 52
Cfr13I GGNCC 1 cut(s) 315
ClaI ATCGAT 1 cut(s) 161
Csp6I GTAC 1 cut(s) 207
CviAII CATG 4 cut(s) 34, 153, 223, 259
CviJI RGCY 8 cut(s) 45, 113, 118, 128, 183, 270, 297, 316
CviKI_1 RGCY 8 cut(s) 45, 113, 118, 128, 183, 270, 297, 316
CviQI GTAC 1 cut(s) 207
DdeI CTNAG 1 cut(s) 114
DpnI GATC 1 cut(s) 219
DpnII GATC 1 cut(s) 217
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
EcoO109I RGGNCCY 1 cut(s) 315
EcoRII CCWGG 1 cut(s) 317
FaeI CATG 4 cut(s) 37, 156, 226, 262
FaiI YATR 7 cut(s) 35, 48, 154, 224, 260, 264, 294
FatI CATG 4 cut(s) 33, 152, 222, 258
FauI CCCGC 1 cut(s) 98
Fnu4HI GCNGC 1 cut(s) 98
Fsp4HI GCNGC 1 cut(s) 98
FspBI CTAG 1 cut(s) 215
FspI TGCGCA 1 cut(s) 51
GlaI GCGC 1 cut(s) 51
GluI GCNGC 1 cut(s) 98
HaeIII GGCC 2 cut(s) 183, 316
HhaI GCGC 1 cut(s) 52
Hin1II CATG 4 cut(s) 37, 156, 226, 262
Hin6I GCGC 1 cut(s) 50
HinP1I GCGC 1 cut(s) 50
HphI GGTGA 1 cut(s) 238
Hpy166II GTNNAC 1 cut(s) 27
Hpy8I GTNNAC 1 cut(s) 27
HpyCH4V TGCA 3 cut(s) 100, 170, 193
HpyF3I CTNAG 1 cut(s) 114
Hsp92II CATG 4 cut(s) 37, 156, 226, 262
HspAI GCGC 1 cut(s) 50
Kzo9I GATC 1 cut(s) 217
LpnPI CCDG 7 cut(s) 86, 165, 173, 197, 261, 284, 304
Lsp1109I GCAGC 1 cut(s) 84
MaeI CTAG 1 cut(s) 215
MalI GATC 1 cut(s) 219
MboI GATC 1 cut(s) 217
MboII GAAGA 1 cut(s) 80
MflI RGATCY 1 cut(s) 217
MluCI AATT 1 cut(s) 285
MmeI TCCRAC 1 cut(s) 112
MnlI CCTC 3 cut(s) 50, 64, 118
MroXI GAANNNNTTC 1 cut(s) 83
MseI TTAA 2 cut(s) 251, 311
MspR9I CCNGG 1 cut(s) 319
Mva1269I GAATGC 1 cut(s) 193
MvaI CCWGG 1 cut(s) 319
NdeII GATC 1 cut(s) 217
NlaIII CATG 4 cut(s) 37, 156, 226, 262
NsbI TGCGCA 1 cut(s) 51
NspI RCATGY 2 cut(s) 156, 262
PaqCI CACCTGC 1 cut(s) 178
PciI ACATGT 1 cut(s) 258
PctI GAATGC 1 cut(s) 193
PdmI GAANNNNTTC 1 cut(s) 83
PkrI GCNGC 1 cut(s) 99
PscI ACATGT 1 cut(s) 258
Psp6I CCWGG 1 cut(s) 317
PspGI CCWGG 1 cut(s) 317
PspPI GGNCC 1 cut(s) 315
PstI CTGCAG 1 cut(s) 102
PsuI RGATCY 1 cut(s) 217
RsaI GTAC 1 cut(s) 208
RsaNI GTAC 1 cut(s) 207
SaqAI TTAA 2 cut(s) 251, 311
SatI GCNGC 1 cut(s) 98
Sau3AI GATC 1 cut(s) 217
Sau96I GGNCC 1 cut(s) 315
ScaI AGTACT 1 cut(s) 208
ScrFI CCNGG 1 cut(s) 319
SetI ASST 4 cut(s) 61, 115, 192, 280
SfcI CTRYAG 1 cut(s) 98
Sse9I AATT 1 cut(s) 285
SsiI CCGC 1 cut(s) 105
SspMI CTAG 1 cut(s) 215
StyD4I CCNGG 1 cut(s) 317
TaqI TCGA 2 cut(s) 161, 211
TasI AATT 1 cut(s) 285
TatI WGTACW 1 cut(s) 206
Tru1I TTAA 2 cut(s) 251, 311
Tru9I TTAA 2 cut(s) 251, 311
TseI GCWGC 1 cut(s) 97
TspDTI ATGAA 3 cut(s) 92, 147, 269
XceI RCATGY 2 cut(s) 156, 262
XcmI CCANNNNNNNNNTGG 1 cut(s) 13
XmnI GAANNNNTTC 1 cut(s) 83
XspI CTAG 1 cut(s) 215
ZrmI AGTACT 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.