Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0001684

Physical Location & Seq

Genomic Coordinates Reverse (-)

10980039 .. 10981280

Gene Structure 1242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1134900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGCTCTACTACCCAACCTCCCACAACCACTACACCTTCACTTACGCTCTCAAGGCATGTTGCTTCCTTCATGATAACAACAAGGGCCGGGAAGTCTACGCCCGCGTCGTAAAAACCGGGCACTTTTCCTATACCTTCATCCAAAACTCGTTGCTTCACTTCTACGTAACCCAAGCTGACATTGTATCTGCTACCCAGGTTTTCGATTCCATACCAAACCCTGATGTTTCGTGGACTTCGATGATTTTGGGTCTTAACAAGTGTAGATTTGTGGAGGAAGCAATTGTTAAGTTTATGTCCATGGATGTGCCACCTAATTCTACTACTCTTGTCATTGTCATGTCCGCTTGTTCGAGAGATGGTTCAGGAGAGGAAGTTGAGCCTAATGAGGATACCATGGTAAATGTATTGTCAGCGTGTTCTTCGATTGGGGCATTGAGTTTAGGCCAGTGGGTGAATTCGTATATAAGTGCATGGCCAGATCTCGTGTTGAATGGCATTCTGGGAAATGCATTAATAAATATGTATGTAAAGTATGGGGAAGTAGGTATGGCAGTTTCGGTTTTTAAAACCCTGGTTTGCAAGGATCACATGTCGTGGAGTACCATCATAAGCGGCATGGCCATGAATGGTTATGGTATACACACGTTGCAGCTCTTTTCGCTCATGCTAGTCCACGGGATTCCTCTTGATGATGTAACCTTCCTTGGCTTGTTATCAGCATGTAGTCACGCATGTCTAGTTGATCAAGGGTTGATGATTTTCAATGTTATGAAAAATGTTTATCGGATTGCCCCTCAAACACTGCACTACGCCTGCCTAGTTGATATGTATGGTCGAGCAAGGTTCTTAGAGGAAGCAGAGAATTTCATGAAGGAAATGCCAACAGAAGTAGACGGCGTTGTTTGGGGAGCGTTGCTTAATGCATGCAAAATTCATGGGAATGAGAAGATGCTTAAGAGGATCAGAAATGGTCTCCTCAAGAGTCGAGGAGTAGGCATCGAAACTTATTGTGGATGCAAATTTCTTCCTCCTCGATCTTGGACGATTTTGCACCTACAAAACAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

357

Amino Acids

39.74

Weight (kDa)

6.45

Isoelectric Point (pI)

38.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001684)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g10870 FvH4_4g10872 FvH4_5g33630 FvH4_5g33630 FvH4_5g33630
malus_domestica	MD00G1175800.v1.1 MD00G1175900.v1.1 MD02G1110200.v1.1 MD02G1134900.v1.1 MD02G1135000.v1.1 MD02G1135100.v1.1 MD03G1186500.v1.1
prunus_persica	Prupe.4G247500_v2.0.a1 Prupe.5G045600_v2.0.a1
pyrus_communis	pycom03g13340 pycom03g13880
rosa_chinensis	RchiOBHm_Chr4g0406551 RchiOBHm_Chr4g0406561 RchiOBHm_Chr4g0406571 RchiOBHm_Chr7g0232221 RchiOBHm_Chr7g0232571
rosa_laevigata	RLG00000001323 RLG00000001326 RLG00000008766 RLG00000012933
rosa_multiflora	Rmu_sc0005505.1_g000001 Rmu_sc0020055.1_g000001 Rmu_ssc0000186.1_g000036
rosa_roxburghii	Rroxscaffold_3G00228190 Rroxscaffold_3G00228220 Rroxscaffold_3G00228230 Rroxscaffold_5G00351430
rosa_rugosa	Rorug04G0072200 Rorug07G0270300 Rorug07G0275100 Rorug07G0275100
rosa_samantha	Rh4AG139300 Rh4BG136400 Rh4CG146500 Rh4DG133700 Rh7AG429400 Rh7AG429600 Rh7BG399000 Rh7BG403100 Rh7BG403300 Rh7CG448200 Rh7CG448500
rosa_wichuraiana	Rw7G035240 Rw7G035490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	96, 640, 894
AccII	CGCG	1 cut(s)	105
AciI	CCGC	3 cut(s)	103, 345, 615
AclWI	GGATC	2 cut(s)	594, 971
AcoI	YGGCCR	2 cut(s)	476, 621
AcsI	RAATTY	4 cut(s)	457, 865, 933, 1022
AfaI	GTAC	1 cut(s)	604
AflII	CTTAAG	1 cut(s)	956
AflIII	ACRYGT	2 cut(s)	591, 645
AgsI	TTSAA	2 cut(s)	493, 766
AjnI	CCWGG	2 cut(s)	195, 573
AluBI	AGCT	2 cut(s)	176, 655
AluI	AGCT	2 cut(s)	176, 655
Alw26I	GTCTC	1 cut(s)	980
AlwI	GGATC	2 cut(s)	594, 971
AoxI	GGCC	4 cut(s)	85, 445, 476, 621
ApeKI	GCWGC	1 cut(s)	652
ApoI	RAATTY	4 cut(s)	457, 865, 933, 1022
AseI	ATTAAT	1 cut(s)	515
AspS9I	GGNCC	1 cut(s)	85
AsuC2I	CCSGG	2 cut(s)	89, 118
AsuHPI	GGTGA	1 cut(s)	466
BaeGI	GKGCMC	1 cut(s)	123
BaeI	ACNNNNGTAYC	2 cut(s)	384, 417
BalI	TGGCCA	2 cut(s)	478, 623
BauI	CACGAG	1 cut(s)	485
BbvI	GCAGC	1 cut(s)	664
BccI	CCATC	2 cut(s)	353, 614
BceAI	ACGGC	1 cut(s)	913
BciT130I	CCWGG	2 cut(s)	197, 575
BciVI	GTATCC	1 cut(s)	385
BclI	TGATCA	1 cut(s)	745
BcnI	CCSGG	2 cut(s)	89, 118
BcoDI	GTCTC	1 cut(s)	980
BfaI	CTAG	3 cut(s)	671, 740, 821
BfrI	CTTAAG	1 cut(s)	956
BfuI	GTATCC	1 cut(s)	385
BglII	AGATCT	1 cut(s)	481
BisI	GCNGC	2 cut(s)	616, 653
BlsI	GCNGC	2 cut(s)	617, 654
Bme1390I	CCNGG	4 cut(s)	89, 118, 197, 575
BmgT120I	GGNCC	1 cut(s)	85
BmrFI	CCNGG	4 cut(s)	89, 118, 197, 575
BmsI	GCATC	3 cut(s)	942, 1007, 1008
BpuEI	CTTGAG	2 cut(s)	35, 965
BpuMI	CCSGG	2 cut(s)	89, 118
BsaAI	YACGTR	1 cut(s)	166
BsaI	GGTCTC	1 cut(s)	980
BsaJI	CCNNGG	6 cut(s)	195, 300, 396, 573, 676, 706
BsaXI	ACNNNNNCTCC	3 cut(s)	32, 360, 390
Bse1I	ACTGG	1 cut(s)	448
BseBI	CCWGG	2 cut(s)	197, 575
BseDI	CCNNGG	6 cut(s)	195, 300, 396, 573, 676, 706
BseGI	GGATG	3 cut(s)	138, 310, 1022
BseNI	ACTGG	1 cut(s)	448
BseRI	GAGGAG	3 cut(s)	968, 1005, 1023
BseSI	GKGCMC	1 cut(s)	123
BseXI	GCAGC	1 cut(s)	664
BsgI	GTGCAG	1 cut(s)	791
Bsh1236I	CGCG	1 cut(s)	105
BshFI	GGCC	4 cut(s)	87, 447, 478, 623
BsiSI	CCGG	2 cut(s)	88, 117
BsmAI	GTCTC	1 cut(s)	980
BsmI	GAATGC	1 cut(s)	498
BsnI	GGCC	4 cut(s)	87, 447, 478, 623
Bso31I	GGTCTC	1 cut(s)	980
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp143I	GATC	5 cut(s)	481, 586, 745, 963, 1037
Bsp19I	CCATGG	2 cut(s)	300, 396
BspACI	CCGC	3 cut(s)	103, 345, 615
BspANI	GGCC	4 cut(s)	87, 447, 478, 623
BspFNI	CGCG	1 cut(s)	105
BspHI	TCATGA	2 cut(s)	70, 870
BspPI	GGATC	2 cut(s)	594, 971
BspTI	CTTAAG	1 cut(s)	956
BspTNI	GGTCTC	1 cut(s)	980
BsrI	ACTGG	1 cut(s)	448
BssECI	CCNNGG	6 cut(s)	195, 300, 396, 573, 676, 706
BssMI	GATC	5 cut(s)	481, 586, 745, 963, 1037
BssNAI	GTATAC	1 cut(s)	641
BssSI	CACGAG	1 cut(s)	485
BssT1I	CCWWGG	3 cut(s)	300, 396, 706
Bst1107I	GTATAC	1 cut(s)	641
Bst2BI	CACGAG	1 cut(s)	485
Bst2UI	CCWGG	2 cut(s)	197, 575
BstAFI	CTTAAG	1 cut(s)	956
BstBAI	YACGTR	1 cut(s)	166
BstC8I	GCNNGC	3 cut(s)	103, 817, 928
BstDEI	CTNAG	1 cut(s)	850
BstDSI	CCRYGG	3 cut(s)	300, 396, 676
BstF5I	GGATG	3 cut(s)	138, 310, 1022
BstFNI	CGCG	1 cut(s)	105
BstKTI	GATC	5 cut(s)	484, 589, 748, 966, 1040
BstMAI	GTCTC	1 cut(s)	980
BstMBI	GATC	5 cut(s)	481, 586, 745, 963, 1037
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 661
BstNI	CCWGG	2 cut(s)	197, 575
BstNSI	RCATGY	5 cut(s)	60, 595, 726, 738, 930
BstSCI	CCNGG	4 cut(s)	87, 116, 195, 573
BstSLI	GKGCMC	1 cut(s)	123
BstSNI	TACGTA	1 cut(s)	166
BstUI	CGCG	1 cut(s)	105
BstV1I	GCAGC	1 cut(s)	664
BstX2I	RGATCY	1 cut(s)	481
BstYI	RGATCY	1 cut(s)	481
BstZ17I	GTATAC	1 cut(s)	641
BsuI	GTATCC	1 cut(s)	385
BsuRI	GGCC	4 cut(s)	87, 447, 478, 623
BtgI	CCRYGG	3 cut(s)	300, 396, 676
BtsCI	GGATG	3 cut(s)	138, 310, 1022
BtsI	GCAGTG	1 cut(s)	803
BtsIMutI	CAGTG	2 cut(s)	455, 803
Cac8I	GCNNGC	3 cut(s)	103, 817, 928
CciI	TCATGA	2 cut(s)	70, 870
Cfr13I	GGNCC	1 cut(s)	85
CseI	GACGC	1 cut(s)	94
Csp6I	GTAC	1 cut(s)	603
CviJI	RGCY	8 cut(s)	87, 176, 382, 447, 478, 623, 655, 711
CviKI_1	RGCY	8 cut(s)	87, 176, 382, 447, 478, 623, 655, 711
CviQI	GTAC	1 cut(s)	603
DdeI	CTNAG	1 cut(s)	850
DpnI	GATC	5 cut(s)	483, 588, 747, 965, 1039
DpnII	GATC	5 cut(s)	481, 586, 745, 963, 1037
DraI	TTTAAA	1 cut(s)	568
EaeI	YGGCCR	2 cut(s)	476, 621
Eco105I	TACGTA	1 cut(s)	166
Eco130I	CCWWGG	3 cut(s)	300, 396, 706
Eco31I	GGTCTC	1 cut(s)	980
EcoRI	GAATTC	1 cut(s)	457
EcoRII	CCWGG	2 cut(s)	195, 573
EcoT14I	CCWWGG	3 cut(s)	300, 396, 706
EcoT22I	ATGCAT	2 cut(s)	514, 928
ErhI	CCWWGG	3 cut(s)	300, 396, 706
FauI	CCCGC	1 cut(s)	110
FbaI	TGATCA	1 cut(s)	745
FblI	GTMKAC	3 cut(s)	96, 640, 894
Fnu4HI	GCNGC	2 cut(s)	616, 653
FokI	GGATG	3 cut(s)	125, 317, 1029
Fsp4HI	GCNGC	2 cut(s)	616, 653
FspBI	CTAG	3 cut(s)	671, 740, 821
GluI	GCNGC	2 cut(s)	616, 653
HaeIII	GGCC	4 cut(s)	87, 447, 478, 623
HapII	CCGG	2 cut(s)	88, 117
HgaI	GACGC	1 cut(s)	94
HinfI	GANTC	3 cut(s)	206, 682, 985
HpaII	CCGG	2 cut(s)	88, 117
HphI	GGTGA	1 cut(s)	466
Hpy166II	GTNNAC	5 cut(s)	97, 234, 641, 676, 895
Hpy188I	TCNGA	2 cut(s)	789, 968
Hpy188III	TCNNGA	6 cut(s)	71, 354, 366, 689, 871, 982
Hpy8I	GTNNAC	5 cut(s)	97, 234, 641, 676, 895
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	5 cut(s)	46, 77, 145, 712, 868
HpyCH4IV	ACGT	2 cut(s)	165, 647
HpyCH4V	TGCA	9 cut(s)	473, 512, 582, 652, 808, 926, 930, 1020, 1054
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 661
HpyF3I	CTNAG	1 cut(s)	850
HpySE526I	ACGT	2 cut(s)	165, 647
Ksp22I	TGATCA	1 cut(s)	745
Kzo9I	GATC	5 cut(s)	481, 586, 745, 963, 1037
LmnI	GCTCC	1 cut(s)	911
Lsp1109I	GCAGC	1 cut(s)	664
LweI	GCATC	3 cut(s)	942, 1007, 1008
MaeI	CTAG	3 cut(s)	671, 740, 821
MaeII	ACGT	2 cut(s)	165, 647
MaeIII	GTNAC	3 cut(s)	166, 697, 728
MalI	GATC	5 cut(s)	483, 588, 747, 965, 1039
MboI	GATC	5 cut(s)	481, 586, 745, 963, 1037
MboII	GAAGA	3 cut(s)	414, 961, 1019
MfeI	CAATTG	1 cut(s)	282
MflI	RGATCY	1 cut(s)	481
MhlI	GDGCHC	1 cut(s)	123
MlsI	TGGCCA	2 cut(s)	478, 623
MluCI	AATT	7 cut(s)	282, 316, 457, 865, 933, 1022, 1066
MluNI	TGGCCA	2 cut(s)	478, 623
MlyI	GAGTC	1 cut(s)	994
Mox20I	TGGCCA	2 cut(s)	478, 623
Mph1103I	ATGCAT	2 cut(s)	514, 928
MscI	TGGCCA	2 cut(s)	478, 623
MseI	TTAA	7 cut(s)	255, 288, 515, 567, 921, 957, 1069
MslI	CAYNNNNRTG	4 cut(s)	305, 338, 623, 942
Msp20I	TGGCCA	2 cut(s)	478, 623
MspCI	CTTAAG	1 cut(s)	956
MspI	CCGG	2 cut(s)	88, 117
MspR9I	CCNGG	4 cut(s)	89, 118, 197, 575
MunI	CAATTG	1 cut(s)	282
Mva1269I	GAATGC	1 cut(s)	498
MvaI	CCWGG	2 cut(s)	197, 575
MvnI	CGCG	1 cut(s)	105
MwoI	GCNNNNNNNGC	2 cut(s)	53, 661
NciI	CCSGG	2 cut(s)	89, 118
NcoI	CCATGG	2 cut(s)	300, 396
NdeII	GATC	5 cut(s)	481, 586, 745, 963, 1037
NmuCI	GTSAC	1 cut(s)	728
NsiI	ATGCAT	2 cut(s)	514, 928
NspI	RCATGY	5 cut(s)	60, 595, 726, 738, 930
PaeI	GCATGC	1 cut(s)	930
PagI	TCATGA	2 cut(s)	70, 870
PciI	ACATGT	1 cut(s)	591
PcsI	WCGNNNNNNNCGW	2 cut(s)	105, 236
PctI	GAATGC	1 cut(s)	498
PfeI	GAWTC	2 cut(s)	206, 682
PkrI	GCNGC	2 cut(s)	617, 654
PleI	GAGTC	1 cut(s)	993
PpsI	GAGTC	1 cut(s)	993
Ppu21I	YACGTR	1 cut(s)	166
PscI	ACATGT	1 cut(s)	591
PshBI	ATTAAT	1 cut(s)	515
Psp6I	CCWGG	2 cut(s)	195, 573
PspGI	CCWGG	2 cut(s)	195, 573
PspPI	GGNCC	1 cut(s)	85
PsuI	RGATCY	1 cut(s)	481
RsaI	GTAC	1 cut(s)	604
RsaNI	GTAC	1 cut(s)	603
RseI	CAYNNNNRTG	4 cut(s)	305, 338, 623, 942
SaqAI	TTAA	7 cut(s)	255, 288, 515, 567, 921, 957, 1069
SatI	GCNGC	2 cut(s)	616, 653
Sau3AI	GATC	5 cut(s)	481, 586, 745, 963, 1037
Sau96I	GGNCC	1 cut(s)	85
SchI	GAGTC	1 cut(s)	994
ScrFI	CCNGG	4 cut(s)	89, 118, 197, 575
SduI	GDGCHC	1 cut(s)	123
SfaNI	GCATC	3 cut(s)	942, 1007, 1008
SmiMI	CAYNNNNRTG	4 cut(s)	305, 338, 623, 942
SmlI	CTYRAG	3 cut(s)	50, 956, 980
SmoI	CTYRAG	3 cut(s)	50, 956, 980
SnaBI	TACGTA	1 cut(s)	166
SphI	GCATGC	1 cut(s)	930
Sse9I	AATT	7 cut(s)	282, 316, 457, 865, 933, 1022, 1066
SsiI	CCGC	3 cut(s)	103, 345, 615
SspMI	CTAG	3 cut(s)	671, 740, 821
StyD4I	CCNGG	4 cut(s)	87, 116, 195, 573
StyI	CCWWGG	3 cut(s)	300, 396, 706
TaiI	ACGT	2 cut(s)	168, 650
TaqI	TCGA	8 cut(s)	204, 239, 353, 425, 838, 988, 1002, 1036
TasI	AATT	7 cut(s)	282, 316, 457, 865, 933, 1022, 1066
TauI	GCSGC	1 cut(s)	618
TfiI	GAWTC	2 cut(s)	206, 682
Tru1I	TTAA	7 cut(s)	255, 288, 515, 567, 921, 957, 1069
Tru9I	TTAA	7 cut(s)	255, 288, 515, 567, 921, 957, 1069
TscAI	CASTG	2 cut(s)	455, 810
TseFI	GTSAC	1 cut(s)	728
TseI	GCWGC	1 cut(s)	652
Tsp45I	GTSAC	1 cut(s)	728
TspDTI	ATGAA	7 cut(s)	59, 127, 641, 788, 859, 887, 926
TspRI	CASTG	2 cut(s)	455, 810
Vha464I	CTTAAG	1 cut(s)	956
VspI	ATTAAT	1 cut(s)	515
XapI	RAATTY	4 cut(s)	457, 865, 933, 1022
XceI	RCATGY	5 cut(s)	60, 595, 726, 738, 930
XmiI	GTMKAC	3 cut(s)	96, 640, 894
XspI	CTAG	3 cut(s)	671, 740, 821
Zsp2I	ATGCAT	2 cut(s)	514, 928

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.