FvH4_4g10872

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0001684
Physical Location & Seq
Reverse (-)
14573503 .. 14574392
890 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g10872.t1

Sequence Viewer

Length: 399 bp
ATGGACTTAGAACCCAATATTGCTACTCAGCCTACTCTTGTGACTGTTTTGTCTTCATGCTCTAGTTTAAGAGCTTTCAAGTTTGGGTGGGAAGCTGAGCCGAATGATGCTACAATTGTCAACGTCATGTTCTTCTGTTTGTTCCTTGAGTTCAGACCAGCAGGTGCATTCCTTTATCAGTACACTGCCATATCTCAGGGTGATGGGGTTTCTCCTGATACTGAAATCTTCCTTGGGTTGTTAACAGCATGCAGTGATGCAAACCTGGTAAAGCAACTGTTGATGTTCTTCAATGCTATGAAGAAAGTTCACTGGAATCTCCTTGAAACACAGAATGATGCTTGTTTGGTCGATATGTATGGTCGAGCTGGGCTCTTAGAGGAAGCAGAGGCTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

133

Amino Acids

14.67

Weight (kDa)

4.29

Isoelectric Point (pI)

42.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 152
AasI GACNNNNNNGTC 1 cut(s) 49
Acc36I ACCTGC 1 cut(s) 152
AfaI GTAC 1 cut(s) 182
AgsI TTSAA 3 cut(s) 79, 292, 326
AjnI CCWGG 1 cut(s) 264
AjuI GAANNNNNNNTTGG 2 cut(s) 216, 248
AluBI AGCT 3 cut(s) 74, 95, 368
AluI AGCT 3 cut(s) 74, 95, 368
AsuHPI GGTGA 1 cut(s) 212
BanII GRGCYC 1 cut(s) 375
BbsI GAAGAC 1 cut(s) 45
BccI CCATC 1 cut(s) 197
BciT130I CCWGG 1 cut(s) 266
BfaI CTAG 1 cut(s) 63
BfuAI ACCTGC 1 cut(s) 152
BlpI GCTNAGC 1 cut(s) 96
Bme1390I CCNGG 1 cut(s) 266
BmrFI CCNGG 1 cut(s) 266
BmsI GCATC 3 cut(s) 97, 247, 328
BpiI GAAGAC 1 cut(s) 45
BplI GAGNNNNNCTC 2 cut(s) 357, 389
Bpu1102I GCTNAGC 1 cut(s) 96
BpuEI CTTGAG 1 cut(s) 167
BsaJI CCNNGG 1 cut(s) 232
Bse1I ACTGG 1 cut(s) 317
BseBI CCWGG 1 cut(s) 266
BseDI CCNNGG 1 cut(s) 232
BseMII CTCAG 3 cut(s) 41, 87, 209
BseNI ACTGG 1 cut(s) 317
BseYI CCCAGC 1 cut(s) 368
BsmI GAATGC 1 cut(s) 167
Bsp1286I GDGCHC 1 cut(s) 375
Bsp1720I GCTNAGC 1 cut(s) 96
BspCNI CTCAG 3 cut(s) 40, 88, 208
BspMI ACCTGC 1 cut(s) 152
BsrI ACTGG 1 cut(s) 317
BssECI CCNNGG 1 cut(s) 232
BssT1I CCWWGG 1 cut(s) 232
Bst2UI CCWGG 1 cut(s) 266
Bst4CI ACNGT 2 cut(s) 46, 279
BstC8I GCNNGC 1 cut(s) 250
BstDEI CTNAG 5 cut(s) 7, 27, 96, 195, 376
BstNI CCWGG 1 cut(s) 266
BstNSI RCATGY 1 cut(s) 252
BstSCI CCNGG 1 cut(s) 264
BstV2I GAAGAC 1 cut(s) 45
BtsI GCAGTG 2 cut(s) 183, 259
BtsIMutI CAGTG 3 cut(s) 183, 259, 310
BveI ACCTGC 1 cut(s) 152
Cac8I GCNNGC 1 cut(s) 250
CsiI ACCWGGT 1 cut(s) 264
Csp6I GTAC 1 cut(s) 181
CviAII CATG 3 cut(s) 57, 127, 249
CviJI RGCY 7 cut(s) 31, 74, 95, 100, 368, 373, 392
CviKI_1 RGCY 7 cut(s) 31, 74, 95, 100, 368, 373, 392
CviQI GTAC 1 cut(s) 181
DdeI CTNAG 5 cut(s) 7, 27, 96, 195, 376
DrdI GACNNNNNNGTC 1 cut(s) 49
DseDI GACNNNNNNGTC 1 cut(s) 49
Eco130I CCWWGG 1 cut(s) 232
Eco24I GRGCYC 1 cut(s) 375
EcoRII CCWGG 1 cut(s) 264
EcoT14I CCWWGG 1 cut(s) 232
EcoT38I GRGCYC 1 cut(s) 375
ErhI CCWWGG 1 cut(s) 232
FaeI CATG 3 cut(s) 60, 130, 252
FaiI YATR 7 cut(s) 58, 128, 191, 250, 299, 356, 360
FatI CATG 3 cut(s) 56, 126, 248
FriOI GRGCYC 1 cut(s) 375
FspBI CTAG 1 cut(s) 63
GsaI CCCAGC 1 cut(s) 372
Hin1II CATG 3 cut(s) 60, 130, 252
HincII GTYRAC 2 cut(s) 121, 243
HindII GTYRAC 2 cut(s) 121, 243
HinfI GANTC 1 cut(s) 316
HpaI GTTAAC 1 cut(s) 243
HphI GGTGA 1 cut(s) 212
Hpy166II GTNNAC 4 cut(s) 121, 183, 243, 310
Hpy188I TCNGA 1 cut(s) 155
Hpy188III TCNNGA 1 cut(s) 215
Hpy8I GTNNAC 4 cut(s) 121, 183, 243, 310
HpyCH4III ACNGT 2 cut(s) 46, 279
HpyCH4IV ACGT 1 cut(s) 123
HpyCH4V TGCA 3 cut(s) 167, 252, 260
HpyF3I CTNAG 5 cut(s) 7, 27, 96, 195, 376
HpySE526I ACGT 1 cut(s) 123
Hsp92II CATG 3 cut(s) 60, 130, 252
KspAI GTTAAC 1 cut(s) 243
LpnPI CCDG 8 cut(s) 147, 171, 182, 228, 251, 278, 298, 354
LweI GCATC 3 cut(s) 97, 247, 328
MabI ACCWGGT 1 cut(s) 264
MaeI CTAG 1 cut(s) 63
MaeII ACGT 1 cut(s) 123
MaeIII GTNAC 1 cut(s) 40
MboII GAAGA 5 cut(s) 45, 124, 220, 280, 313
MfeI CAATTG 1 cut(s) 114
MhlI GDGCHC 1 cut(s) 375
MluCI AATT 1 cut(s) 114
MnlI CCTC 2 cut(s) 373, 382
MseI TTAA 3 cut(s) 68, 242, 397
MspR9I CCNGG 1 cut(s) 266
MunI CAATTG 1 cut(s) 114
Mva1269I GAATGC 1 cut(s) 167
MvaI CCWGG 1 cut(s) 266
NlaIII CATG 3 cut(s) 60, 130, 252
NmuCI GTSAC 1 cut(s) 40
NspI RCATGY 1 cut(s) 252
PaeI GCATGC 1 cut(s) 252
PaqCI CACCTGC 1 cut(s) 152
PctI GAATGC 1 cut(s) 167
PfeI GAWTC 1 cut(s) 316
Psp6I CCWGG 1 cut(s) 264
PspFI CCCAGC 1 cut(s) 368
PspGI CCWGG 1 cut(s) 264
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
SaqAI TTAA 3 cut(s) 68, 242, 397
ScrFI CCNGG 1 cut(s) 266
SduI GDGCHC 1 cut(s) 375
SetI ASST 6 cut(s) 76, 97, 126, 166, 267, 370
SexAI ACCWGGT 1 cut(s) 264
SfaNI GCATC 3 cut(s) 97, 247, 328
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
SphI GCATGC 1 cut(s) 252
Sse9I AATT 1 cut(s) 114
SspI AATATT 1 cut(s) 19
SspMI CTAG 1 cut(s) 63
StyD4I CCNGG 1 cut(s) 264
StyI CCWWGG 1 cut(s) 232
TaaI ACNGT 2 cut(s) 46, 279
TaiI ACGT 1 cut(s) 126
TaqI TCGA 2 cut(s) 351, 364
TasI AATT 1 cut(s) 114
TatI WGTACW 1 cut(s) 180
TfiI GAWTC 1 cut(s) 316
Tru1I TTAA 3 cut(s) 68, 242, 397
Tru9I TTAA 3 cut(s) 68, 242, 397
TscAI CASTG 3 cut(s) 190, 259, 317
TseFI GTSAC 1 cut(s) 40
Tsp45I GTSAC 1 cut(s) 40
TspDTI ATGAA 2 cut(s) 45, 314
TspRI CASTG 3 cut(s) 190, 259, 317
XceI RCATGY 1 cut(s) 252
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.