RLG00000001326

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001684
Physical Location & Seq
Forward (+)
14136767 .. 14137599
833 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001326

Sequence Viewer

Length: 594 bp
ATGCCCAAGAGATATGTGGTTTCTTGGACTATCATGGTGGGTGGCTATGCGCAAAGAGGTTTTTGTGAAGAGGCAATGAAACTTTTCCAACAACTGCTGCAGGGCGGGGTAGCTGAGCCTAATGAGGCTACCATTGTCAATGTATTGTCAGCATGTTCATCGATTTGTGCATTGAGTTCAGGCCAGCAGGCCCTGGAGTGGATAGATATCATTTCATGGAGTACTATAATAAGTAGCATGTCCATGAATGGCCATCGCATCCATGTGTTGGCAGCTCTTTTCCAGAAGTCTACCGAATTGTCCCTGAAACATAGCATTATGTGTCTGGTCGTTATGTATGGTCGAGCTGGGCCCTTAGAGGAAGCAGAGGCTTTTATTAATGAAATGCCAATGGAAGCTGATGGTCCTGTTTGGGGAGCGCTGGTTAATGCGTGCAAAATTGATGGGAATAATGAGATGGTTGAGAGGATCAGAGAAGACCTCTGCAATAGTGCACGAGTGAGCATTTGGAACTCTCACTGTTATCAAATGCTTATGCTATACATGATAGCTGGGATGATTCTAATAAGGATTGCAATGAAATATGAGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

198

Amino Acids

22.02

Weight (kDa)

5.58

Isoelectric Point (pI)

36.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 6 - 52 3.4e-06 PPR repeat family
PPR PF01535 7 - 36 6.4e-07 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 51
AccB7I CCANNNNNTGG 1 cut(s) 268
AccI GTMKAC 1 cut(s) 290
AciI CCGC 1 cut(s) 105
AclWI GGATC 1 cut(s) 476
AcoI YGGCCR 1 cut(s) 250
AfaI GTAC 1 cut(s) 223
AfeI AGCGCT 1 cut(s) 420
AfiI CCNNNNNNNGG 3 cut(s) 198, 268, 413
AjnI CCWGG 1 cut(s) 192
AluBI AGCT 5 cut(s) 113, 275, 347, 398, 551
AluI AGCT 5 cut(s) 113, 275, 347, 398, 551
Alw21I GWGCWC 1 cut(s) 496
Alw44I GTGCAC 1 cut(s) 492
AlwI GGATC 1 cut(s) 476
AlwNI CAGNNNCTG 1 cut(s) 193
Aor51HI AGCGCT 1 cut(s) 420
AoxI GGCC 4 cut(s) 181, 189, 250, 350
ApaI GGGCCC 1 cut(s) 354
ApaLI GTGCAC 1 cut(s) 492
ApeKI GCWGC 2 cut(s) 97, 272
AseI ATTAAT 1 cut(s) 378
Asp700I GAANNNNTTC 1 cut(s) 83
AspLEI GCGC 2 cut(s) 52, 421
AspS9I GGNCC 4 cut(s) 190, 350, 351, 404
AvaII GGWCC 1 cut(s) 404
BaeGI GKGCMC 2 cut(s) 354, 496
BalI TGGCCA 1 cut(s) 252
BanII GRGCYC 1 cut(s) 354
BauI CACGAG 1 cut(s) 495
BbsI GAAGAC 1 cut(s) 483
Bbv12I GWGCWC 1 cut(s) 496
BbvI GCAGC 2 cut(s) 84, 284
BccI CCATC 4 cut(s) 261, 395, 437, 451
BcgI CGANNNNNNTGC 2 cut(s) 141, 175
BciT130I CCWGG 1 cut(s) 194
BfmI CTRYAG 1 cut(s) 98
BfoI RGCGCY 1 cut(s) 422
BisI GCNGC 2 cut(s) 98, 273
BlpI GCTNAGC 1 cut(s) 114
BlsI GCNGC 2 cut(s) 99, 274
BmcAI AGTACT 1 cut(s) 223
Bme1390I CCNGG 1 cut(s) 194
Bme18I GGWCC 1 cut(s) 404
BmgT120I GGNCC 4 cut(s) 190, 350, 351, 404
BmiI GGNNCC 1 cut(s) 352
BmrFI CCNGG 1 cut(s) 194
BmsI GCATC 1 cut(s) 267
BpiI GAAGAC 1 cut(s) 483
BplI GAGNNNNNCTC 2 cut(s) 465, 497
BpmI CTGGAG 1 cut(s) 215
Bpu1102I GCTNAGC 1 cut(s) 114
Bsa29I ATCGAT 1 cut(s) 161
BsaBI GATNNNNATC 1 cut(s) 206
BsaJI CCNNGG 1 cut(s) 192
BsaXI ACNNNNNCTCC 2 cut(s) 408, 438
Bsc4I CCNNNNNNNGG 3 cut(s) 198, 268, 413
Bse3DI GCAATG 2 cut(s) 81, 582
Bse8I GATNNNNATC 1 cut(s) 206
BseBI CCWGG 1 cut(s) 194
BseCI ATCGAT 1 cut(s) 161
BseDI CCNNGG 1 cut(s) 192
BseGI GGATG 2 cut(s) 258, 561
BseJI GATNNNNATC 1 cut(s) 206
BseLI CCNNNNNNNGG 3 cut(s) 198, 268, 413
BseMI GCAATG 2 cut(s) 81, 582
BseMII CTCAG 1 cut(s) 105
BseSI GKGCMC 2 cut(s) 354, 496
BseXI GCAGC 2 cut(s) 84, 284
BseYI CCCAGC 2 cut(s) 347, 551
BshFI GGCC 4 cut(s) 183, 191, 252, 352
BshVI ATCGAT 1 cut(s) 161
BsiHKAI GWGCWC 1 cut(s) 496
BslFI GGGAC 1 cut(s) 286
BslI CCNNNNNNNGG 3 cut(s) 198, 268, 413
BsmFI GGGAC 1 cut(s) 286
BsnI GGCC 4 cut(s) 183, 191, 252, 352
Bsp120I GGGCCC 1 cut(s) 350
Bsp1286I GDGCHC 2 cut(s) 354, 496
Bsp143I GATC 1 cut(s) 468
Bsp1720I GCTNAGC 1 cut(s) 114
BspACI CCGC 1 cut(s) 105
BspANI GGCC 4 cut(s) 183, 191, 252, 352
BspCNI CTCAG 1 cut(s) 106
BspDI ATCGAT 1 cut(s) 161
BspLI GGNNCC 1 cut(s) 352
BspMAI CTGCAG 1 cut(s) 102
BspPI GGATC 1 cut(s) 476
BsrDI GCAATG 2 cut(s) 81, 582
BssECI CCNNGG 1 cut(s) 192
BssMI GATC 1 cut(s) 468
BssSI CACGAG 1 cut(s) 495
Bst2BI CACGAG 1 cut(s) 495
Bst2UI CCWGG 1 cut(s) 194
Bst4CI ACNGT 1 cut(s) 521
Bst6I CTCTTC 1 cut(s) 63
BstC8I GCNNGC 3 cut(s) 185, 189, 433
BstDEI CTNAG 2 cut(s) 114, 355
BstF5I GGATG 2 cut(s) 258, 561
BstH2I RGCGCY 1 cut(s) 422
BstHHI GCGC 2 cut(s) 52, 421
BstKTI GATC 1 cut(s) 471
BstMBI GATC 1 cut(s) 468
BstNI CCWGG 1 cut(s) 194
BstNSI RCATGY 2 cut(s) 156, 241
BstSCI CCNGG 1 cut(s) 192
BstSFI CTRYAG 1 cut(s) 98
BstSLI GKGCMC 2 cut(s) 354, 496
BstV1I GCAGC 2 cut(s) 84, 284
BstV2I GAAGAC 1 cut(s) 483
Bsu15I ATCGAT 1 cut(s) 161
BsuRI GGCC 4 cut(s) 183, 191, 252, 352
BsuTUI ATCGAT 1 cut(s) 161
BtgZI GCGATG 1 cut(s) 239
BtsCI GGATG 2 cut(s) 258, 561
BtsIMutI CAGTG 1 cut(s) 517
Cac8I GCNNGC 3 cut(s) 185, 189, 433
CaiI CAGNNNCTG 1 cut(s) 193
CfoI GCGC 2 cut(s) 52, 421
Cfr13I GGNCC 4 cut(s) 190, 350, 351, 404
ClaI ATCGAT 1 cut(s) 161
Csp6I GTAC 1 cut(s) 222
CviAII CATG 7 cut(s) 34, 153, 216, 238, 244, 263, 544
CviQI GTAC 1 cut(s) 222
DdeI CTNAG 2 cut(s) 114, 355
DpnI GATC 1 cut(s) 470
DpnII GATC 1 cut(s) 468
EaeI YGGCCR 1 cut(s) 250
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
Eco24I GRGCYC 1 cut(s) 354
Eco32I GATATC 1 cut(s) 208
Eco47I GGWCC 1 cut(s) 404
Eco47III AGCGCT 1 cut(s) 420
EcoO109I RGGNCCY 2 cut(s) 190, 351
EcoRII CCWGG 1 cut(s) 192
EcoRV GATATC 1 cut(s) 208
EcoT38I GRGCYC 1 cut(s) 354
FaeI CATG 7 cut(s) 37, 156, 219, 241, 247, 266, 547
FaqI GGGAC 1 cut(s) 286
FatI CATG 7 cut(s) 33, 152, 215, 237, 243, 262, 543
FauI CCCGC 1 cut(s) 98
FblI GTMKAC 1 cut(s) 290
Fnu4HI GCNGC 2 cut(s) 98, 273
FokI GGATG 2 cut(s) 245, 568
FriOI GRGCYC 1 cut(s) 354
Fsp4HI GCNGC 2 cut(s) 98, 273
FspI TGCGCA 1 cut(s) 51
GlaI GCGC 2 cut(s) 51, 420
GluI GCNGC 2 cut(s) 98, 273
GsaI CCCAGC 2 cut(s) 351, 555
GsuI CTGGAG 1 cut(s) 215
HaeII RGCGCY 1 cut(s) 422
HaeIII GGCC 4 cut(s) 183, 191, 252, 352
HhaI GCGC 2 cut(s) 52, 421
Hin1II CATG 7 cut(s) 37, 156, 219, 241, 247, 266, 547
Hin6I GCGC 2 cut(s) 50, 419
HinP1I GCGC 2 cut(s) 50, 419
HinfI GANTC 1 cut(s) 559
Hpy166II GTNNAC 2 cut(s) 291, 494
Hpy188I TCNGA 1 cut(s) 473
Hpy188III TCNNGA 1 cut(s) 283
Hpy8I GTNNAC 2 cut(s) 291, 494
HpyCH4III ACNGT 1 cut(s) 521
HpyCH4V TGCA 6 cut(s) 100, 170, 435, 486, 494, 575
HpyF3I CTNAG 2 cut(s) 114, 355
Hsp92II CATG 7 cut(s) 37, 156, 219, 241, 247, 266, 547
HspAI GCGC 2 cut(s) 50, 419
Kzo9I GATC 1 cut(s) 468
LmnI GCTCC 1 cut(s) 416
Lsp1109I GCAGC 2 cut(s) 84, 284
LweI GCATC 1 cut(s) 267
MalI GATC 1 cut(s) 470
MboI GATC 1 cut(s) 468
MboII GAAGA 2 cut(s) 80, 488
MhlI GDGCHC 2 cut(s) 354, 496
MlsI TGGCCA 1 cut(s) 252
MluCI AATT 2 cut(s) 296, 438
MluNI TGGCCA 1 cut(s) 252
MmeI TCCRAC 1 cut(s) 112
MnlI CCTC 7 cut(s) 50, 64, 118, 352, 361, 459, 491
Mox20I TGGCCA 1 cut(s) 252
MroXI GAANNNNTTC 1 cut(s) 83
MscI TGGCCA 1 cut(s) 252
MseI TTAA 2 cut(s) 378, 426
MslI CAYNNNNRTG 2 cut(s) 242, 263
Msp20I TGGCCA 1 cut(s) 252
MspR9I CCNGG 1 cut(s) 194
MvaI CCWGG 1 cut(s) 194
NdeII GATC 1 cut(s) 468
NlaIII CATG 7 cut(s) 37, 156, 219, 241, 247, 266, 547
NlaIV GGNNCC 1 cut(s) 352
NsbI TGCGCA 1 cut(s) 51
NspI RCATGY 2 cut(s) 156, 241
PdmI GAANNNNTTC 1 cut(s) 83
PfeI GAWTC 1 cut(s) 559
PflMI CCANNNNNTGG 1 cut(s) 268
PkrI GCNGC 2 cut(s) 99, 274
PshBI ATTAAT 1 cut(s) 378
Psp6I CCWGG 1 cut(s) 192
PspFI CCCAGC 2 cut(s) 347, 551
PspGI CCWGG 1 cut(s) 192
PspN4I GGNNCC 1 cut(s) 352
PspOMI GGGCCC 1 cut(s) 350
PspPI GGNCC 4 cut(s) 190, 350, 351, 404
PstI CTGCAG 1 cut(s) 102
PstNI CAGNNNCTG 1 cut(s) 193
RsaI GTAC 1 cut(s) 223
RsaNI GTAC 1 cut(s) 222
RseI CAYNNNNRTG 2 cut(s) 242, 263
SaqAI TTAA 2 cut(s) 378, 426
SatI GCNGC 2 cut(s) 98, 273
Sau3AI GATC 1 cut(s) 468
Sau96I GGNCC 4 cut(s) 190, 350, 351, 404
ScaI AGTACT 1 cut(s) 223
ScrFI CCNGG 1 cut(s) 194
SduI GDGCHC 2 cut(s) 354, 496
SetI ASST 7 cut(s) 61, 115, 277, 349, 400, 483, 553
SfaNI GCATC 1 cut(s) 267
SfcI CTRYAG 1 cut(s) 98
SinI GGWCC 1 cut(s) 404
SmiMI CAYNNNNRTG 2 cut(s) 242, 263
Sse9I AATT 2 cut(s) 296, 438
SsiI CCGC 1 cut(s) 105
StyD4I CCNGG 1 cut(s) 192
TaaI ACNGT 1 cut(s) 521
TaqI TCGA 2 cut(s) 161, 343
TasI AATT 2 cut(s) 296, 438
TatI WGTACW 1 cut(s) 221
TfiI GAWTC 1 cut(s) 559
Tru1I TTAA 2 cut(s) 378, 426
Tru9I TTAA 2 cut(s) 378, 426
TscAI CASTG 1 cut(s) 524
TseI GCWGC 2 cut(s) 97, 272
TspDTI ATGAA 6 cut(s) 92, 147, 204, 260, 396, 593
TspRI CASTG 1 cut(s) 524
Van91I CCANNNNNTGG 1 cut(s) 268
VneI GTGCAC 1 cut(s) 492
VpaK11BI GGWCC 1 cut(s) 404
VspI ATTAAT 1 cut(s) 378
XceI RCATGY 2 cut(s) 156, 241
XcmI CCANNNNNNNNNTGG 1 cut(s) 13
XmiI GTMKAC 1 cut(s) 290
XmnI GAANNNNTTC 1 cut(s) 83
ZrmI AGTACT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.