RchiOBHm_Chr4g0406561

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0001684
Physical Location & Seq
Forward (+)
28370510 .. 28370746
237 bp
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UTR
Exon/CDS
Intron
PRQ37790

Sequence Viewer

Length: 174 bp
ATGCTAGTCAATGGGGTTTCTCCTGATGGTGTAACCTTCCTTGGGTTATTAACAGCATGCAGTCATGCAGGCCTTGTAAACCAAGGGTTGATGTTCTTCAAGGCTATGAAGAAAGTTTACTGGATTGTCCCTGAAACACAATATCATGCTTGTTTGGTCGATATGTACGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

57

Amino Acids

6.27

Weight (kDa)

6.69

Isoelectric Point (pI)

28.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 167
AfiI CCNNNNNNNGG 1 cut(s) 42
AgsI TTSAA 1 cut(s) 100
AoxI GGCC 1 cut(s) 70
BarI GAAGNNNNNNTAC 2 cut(s) 101, 133
BccI CCATC 1 cut(s) 20
BfaI CTAG 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 40, 82
Bsc4I CCNNNNNNNGG 1 cut(s) 42
Bse1I ACTGG 1 cut(s) 125
BseDI CCNNGG 2 cut(s) 40, 82
BseLI CCNNNNNNNGG 1 cut(s) 42
BseNI ACTGG 1 cut(s) 125
BshFI GGCC 1 cut(s) 72
BslFI GGGAC 1 cut(s) 113
BslI CCNNNNNNNGG 1 cut(s) 42
BsmFI GGGAC 1 cut(s) 113
BsnI GGCC 1 cut(s) 72
BspANI GGCC 1 cut(s) 72
BsrI ACTGG 1 cut(s) 125
BssECI CCNNGG 2 cut(s) 40, 82
BssT1I CCWWGG 2 cut(s) 40, 82
Bst4CI ACNGT 1 cut(s) 170
BstC8I GCNNGC 2 cut(s) 58, 70
BstNSI RCATGY 1 cut(s) 60
BsuRI GGCC 1 cut(s) 72
Cac8I GCNNGC 2 cut(s) 58, 70
Csp6I GTAC 1 cut(s) 166
CviAII CATG 3 cut(s) 57, 65, 146
CviJI RGCY 2 cut(s) 72, 104
CviKI_1 RGCY 2 cut(s) 72, 104
CviQI GTAC 1 cut(s) 166
Eco130I CCWWGG 2 cut(s) 40, 82
Eco147I AGGCCT 1 cut(s) 72
EcoT14I CCWWGG 2 cut(s) 40, 82
ErhI CCWWGG 2 cut(s) 40, 82
FaeI CATG 3 cut(s) 60, 68, 149
FaiI YATR 5 cut(s) 58, 66, 107, 147, 164
FaqI GGGAC 1 cut(s) 113
FatI CATG 3 cut(s) 56, 64, 145
FspBI CTAG 1 cut(s) 5
HaeIII GGCC 1 cut(s) 72
Hin1II CATG 3 cut(s) 60, 68, 149
Hpy166II GTNNAC 2 cut(s) 79, 118
Hpy188III TCNNGA 1 cut(s) 23
Hpy8I GTNNAC 2 cut(s) 79, 118
HpyAV CCTTC 1 cut(s) 46
HpyCH4III ACNGT 1 cut(s) 170
HpyCH4V TGCA 2 cut(s) 60, 68
Hsp92II CATG 3 cut(s) 60, 68, 149
LpnPI CCDG 4 cut(s) 36, 54, 106, 144
MaeI CTAG 1 cut(s) 5
MaeIII GTNAC 1 cut(s) 31
MboII GAAGA 2 cut(s) 88, 121
MseI TTAA 1 cut(s) 50
NlaIII CATG 3 cut(s) 60, 68, 149
NspI RCATGY 1 cut(s) 60
PaeI GCATGC 1 cut(s) 60
PceI AGGCCT 1 cut(s) 72
RsaI GTAC 1 cut(s) 167
RsaNI GTAC 1 cut(s) 166
SaqAI TTAA 1 cut(s) 50
SetI ASST 1 cut(s) 38
SphI GCATGC 1 cut(s) 60
SseBI AGGCCT 1 cut(s) 72
SspMI CTAG 1 cut(s) 5
StuI AGGCCT 1 cut(s) 72
StyI CCWWGG 2 cut(s) 40, 82
TaaI ACNGT 1 cut(s) 170
TaqI TCGA 1 cut(s) 159
Tru1I TTAA 1 cut(s) 50
Tru9I TTAA 1 cut(s) 50
TspDTI ATGAA 1 cut(s) 122
XceI RCATGY 1 cut(s) 60
XspI CTAG 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.