Rh4AG139300

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0001684
Physical Location & Seq
Forward (+)
35542030 .. 35542629
600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG139300.1

Sequence Viewer

Length: 600 bp
ATGTCCATGGACGCAGAACCCAATGTTACTACTCTTGTGACAGTTTTGTCTTTGTGTTCTAGTTTAAGAGCTTTCAAGTTAGGTAAAGCTGTTCATGGCCATTGTTTGAGGAATGTACACAAGTGTAATATGATTTTGGACAATGCAATGTTGGATTTCTATCTGAGATGTGGTTCTTTGGTGGCTGCAAGATACTTGTTTGTCATTATGCCCAAGAGAGATTTTGTTTCTTGGAGTAGCATGGTGGGTGGTTATGCACATAGAGGTTTATGTGAGGAGGCAATGAGACTTTTCCAACAACTGGTGCTGGGCTGGGAAGTTGAGCCGAATGAGGCTACCATTGTCAATGTATTGTCAGCATGTTCTTCTGTTTGTTCCTTGAGTTCAAGCCAGCAGGTGCATTTTTATATCAGTACTCAGCCAGATCTCATGGTGAATAGCAATGTGGGAAATGCCTTGATCAACATGCATATTAGGAGTGGACATTTGGGTATGGCTATTTCGGTTTTTAAGGCCTTGGAGTGCAAAGATATCATTTTATGGAGTACCATAATAAGCGGTATGGTATACATGTGTTGCAGCTCTTTTCCTGAATGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

199

Amino Acids

22.03

Weight (kDa)

7.01

Isoelectric Point (pI)

52.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR PF01535 76 - 101 7.9e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 385
AasI GACNNNNNNGTC 1 cut(s) 46
Acc36I ACCTGC 1 cut(s) 385
AccB7I CCANNNNNTGG 1 cut(s) 301
AccI GTMKAC 1 cut(s) 567
AciI CCGC 1 cut(s) 558
AcoI YGGCCR 1 cut(s) 97
AfaI GTAC 3 cut(s) 117, 415, 547
AfiI CCNNNNNNNGG 1 cut(s) 301
AflIII ACRYGT 1 cut(s) 570
AgsI TTSAA 2 cut(s) 76, 387
AluBI AGCT 3 cut(s) 71, 89, 582
AluI AGCT 3 cut(s) 71, 89, 582
Alw26I GTCTC 1 cut(s) 280
AoxI GGCC 2 cut(s) 97, 513
ApeKI GCWGC 2 cut(s) 185, 579
AsuHPI GGTGA 1 cut(s) 445
BalI TGGCCA 1 cut(s) 99
BbvI GCAGC 2 cut(s) 172, 591
BclI TGATCA 1 cut(s) 459
BcoDI GTCTC 1 cut(s) 280
BfaI CTAG 2 cut(s) 60, 598
BfuAI ACCTGC 1 cut(s) 385
BglII AGATCT 1 cut(s) 424
BisI GCNGC 2 cut(s) 186, 580
BlsI GCNGC 2 cut(s) 187, 581
BmcAI AGTACT 1 cut(s) 415
BpuEI CTTGAG 1 cut(s) 400
BsaBI GATNNNNATC 1 cut(s) 159
BsaJI CCNNGG 2 cut(s) 6, 516
Bsc4I CCNNNNNNNGG 1 cut(s) 301
Bse1I ACTGG 1 cut(s) 306
Bse3DI GCAATG 3 cut(s) 153, 288, 448
Bse8I GATNNNNATC 1 cut(s) 159
BseDI CCNNGG 2 cut(s) 6, 516
BseJI GATNNNNATC 1 cut(s) 159
BseLI CCNNNNNNNGG 1 cut(s) 301
BseMI GCAATG 3 cut(s) 153, 288, 448
BseMII CTCAG 2 cut(s) 155, 431
BseNI ACTGG 1 cut(s) 306
BseRI GAGGAG 1 cut(s) 290
BseXI GCAGC 2 cut(s) 172, 591
BseYI CCCAGC 2 cut(s) 307, 312
BshFI GGCC 2 cut(s) 99, 515
BslI CCNNNNNNNGG 1 cut(s) 301
BsmAI GTCTC 1 cut(s) 280
BsmI GAATGC 1 cut(s) 599
BsnI GGCC 2 cut(s) 99, 515
Bsp1407I TGTACA 1 cut(s) 115
Bsp143I GATC 2 cut(s) 424, 459
Bsp19I CCATGG 1 cut(s) 6
BspACI CCGC 1 cut(s) 558
BspANI GGCC 2 cut(s) 99, 515
BspCNI CTCAG 2 cut(s) 156, 430
BspMI ACCTGC 1 cut(s) 385
BsrDI GCAATG 3 cut(s) 153, 288, 448
BsrGI TGTACA 1 cut(s) 115
BsrI ACTGG 1 cut(s) 306
BssECI CCNNGG 2 cut(s) 6, 516
BssMI GATC 2 cut(s) 424, 459
BssNAI GTATAC 1 cut(s) 568
BssT1I CCWWGG 2 cut(s) 6, 516
Bst1107I GTATAC 1 cut(s) 568
Bst4CI ACNGT 1 cut(s) 43
BstAUI TGTACA 1 cut(s) 115
BstC8I GCNNGC 1 cut(s) 392
BstDEI CTNAG 2 cut(s) 164, 417
BstDSI CCRYGG 1 cut(s) 6
BstKTI GATC 2 cut(s) 427, 462
BstMAI GTCTC 1 cut(s) 280
BstMBI GATC 2 cut(s) 424, 459
BstNSI RCATGY 3 cut(s) 363, 469, 574
BstV1I GCAGC 2 cut(s) 172, 591
BstX2I RGATCY 1 cut(s) 424
BstYI RGATCY 1 cut(s) 424
BstZ17I GTATAC 1 cut(s) 568
BsuRI GGCC 2 cut(s) 99, 515
BtgI CCRYGG 1 cut(s) 6
BveI ACCTGC 1 cut(s) 385
Cac8I GCNNGC 1 cut(s) 392
CseI GACGC 1 cut(s) 20
Csp6I GTAC 3 cut(s) 116, 414, 546
CviAII CATG 7 cut(s) 7, 95, 241, 360, 430, 466, 571
CviQI GTAC 3 cut(s) 116, 414, 546
DdeI CTNAG 2 cut(s) 164, 417
DpnI GATC 2 cut(s) 426, 461
DpnII GATC 2 cut(s) 424, 459
DrdI GACNNNNNNGTC 1 cut(s) 46
DseDI GACNNNNNNGTC 1 cut(s) 46
EaeI YGGCCR 1 cut(s) 97
Eco130I CCWWGG 2 cut(s) 6, 516
Eco147I AGGCCT 1 cut(s) 515
Eco32I GATATC 1 cut(s) 532
EcoRV GATATC 1 cut(s) 532
EcoT14I CCWWGG 2 cut(s) 6, 516
EcoT22I ATGCAT 1 cut(s) 471
ErhI CCWWGG 2 cut(s) 6, 516
FaeI CATG 7 cut(s) 10, 98, 244, 363, 433, 469, 574
FatI CATG 7 cut(s) 6, 94, 240, 359, 429, 465, 570
FbaI TGATCA 1 cut(s) 459
FblI GTMKAC 1 cut(s) 567
Fnu4HI GCNGC 2 cut(s) 186, 580
Fsp4HI GCNGC 2 cut(s) 186, 580
FspBI CTAG 2 cut(s) 60, 598
GluI GCNGC 2 cut(s) 186, 580
GsaI CCCAGC 2 cut(s) 311, 316
HaeIII GGCC 2 cut(s) 99, 515
HgaI GACGC 1 cut(s) 20
Hin1II CATG 7 cut(s) 10, 98, 244, 363, 433, 469, 574
HphI GGTGA 1 cut(s) 445
Hpy166II GTNNAC 3 cut(s) 118, 482, 568
Hpy188I TCNGA 1 cut(s) 165
Hpy188III TCNNGA 1 cut(s) 590
Hpy8I GTNNAC 3 cut(s) 118, 482, 568
HpyCH4III ACNGT 1 cut(s) 43
HpyCH4V TGCA 7 cut(s) 146, 188, 257, 400, 469, 525, 579
HpyF3I CTNAG 2 cut(s) 164, 417
Hsp92II CATG 7 cut(s) 10, 98, 244, 363, 433, 469, 574
Ksp22I TGATCA 1 cut(s) 459
Kzo9I GATC 2 cut(s) 424, 459
LpnPI CCDG 6 cut(s) 287, 293, 298, 380, 404, 435
Lsp1109I GCAGC 2 cut(s) 172, 591
MaeI CTAG 2 cut(s) 60, 598
MaeIII GTNAC 2 cut(s) 25, 37
MalI GATC 2 cut(s) 426, 461
MboI GATC 2 cut(s) 424, 459
MboII GAAGA 1 cut(s) 357
MflI RGATCY 1 cut(s) 424
MlsI TGGCCA 1 cut(s) 99
MluNI TGGCCA 1 cut(s) 99
MmeI TCCRAC 2 cut(s) 132, 319
MnlI CCTC 5 cut(s) 102, 257, 268, 271, 325
Mox20I TGGCCA 1 cut(s) 99
Mph1103I ATGCAT 1 cut(s) 471
MscI TGGCCA 1 cut(s) 99
MseI TTAA 2 cut(s) 65, 510
Msp20I TGGCCA 1 cut(s) 99
Mva1269I GAATGC 1 cut(s) 599
NcoI CCATGG 1 cut(s) 6
NdeII GATC 2 cut(s) 424, 459
NlaIII CATG 7 cut(s) 10, 98, 244, 363, 433, 469, 574
NmuCI GTSAC 1 cut(s) 37
NsiI ATGCAT 1 cut(s) 471
NspI RCATGY 3 cut(s) 363, 469, 574
PaqCI CACCTGC 1 cut(s) 385
PceI AGGCCT 1 cut(s) 515
PciI ACATGT 1 cut(s) 570
PctI GAATGC 1 cut(s) 599
PflMI CCANNNNNTGG 1 cut(s) 301
PkrI GCNGC 2 cut(s) 187, 581
PscI ACATGT 1 cut(s) 570
PspFI CCCAGC 2 cut(s) 307, 312
PsuI RGATCY 1 cut(s) 424
RsaI GTAC 3 cut(s) 117, 415, 547
RsaNI GTAC 3 cut(s) 116, 414, 546
SaqAI TTAA 2 cut(s) 65, 510
SatI GCNGC 2 cut(s) 186, 580
Sau3AI GATC 2 cut(s) 424, 459
ScaI AGTACT 1 cut(s) 415
SetI ASST 6 cut(s) 73, 85, 91, 268, 399, 584
SmlI CTYRAG 1 cut(s) 379
SmoI CTYRAG 1 cut(s) 379
SseBI AGGCCT 1 cut(s) 515
SsiI CCGC 1 cut(s) 558
SspMI CTAG 2 cut(s) 60, 598
StuI AGGCCT 1 cut(s) 515
StyI CCWWGG 2 cut(s) 6, 516
TaaI ACNGT 1 cut(s) 43
TatI WGTACW 2 cut(s) 115, 413
Tru1I TTAA 2 cut(s) 65, 510
Tru9I TTAA 2 cut(s) 65, 510
TseFI GTSAC 1 cut(s) 37
TseI GCWGC 2 cut(s) 185, 579
Tsp45I GTSAC 1 cut(s) 37
TspDTI ATGAA 1 cut(s) 83
Van91I CCANNNNNTGG 1 cut(s) 301
XceI RCATGY 3 cut(s) 363, 469, 574
XmiI GTMKAC 1 cut(s) 567
XspI CTAG 2 cut(s) 60, 598
ZrmI AGTACT 1 cut(s) 415
Zsp2I ATGCAT 1 cut(s) 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.