Rmu_sc0005505.1_g000001

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005505.1
OG0001684
Physical Location & Seq
Reverse (-)
10837 .. 11097
261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005505.1_g000001.1.cds

Sequence Viewer

Length: 261 bp
atgtatggtcgagctgggcccttagaggaagcagaggcttttattaatgaaatgccaatggaagctgatggtcctgtttggggagcgctggttaatgcttgcaaaattgatgggaataatgagatggttgagaggatcagagaagacctctgcaatagtgcacgagtgagcatttggaacttacactgttatcaaatgcttatgctatacatgatagctgggatgattctaataaggattgcaatgaaatatgagagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

86

Amino Acids

9.87

Weight (kDa)

4.84

Isoelectric Point (pI)

32.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 143
AfeI AGCGCT 1 cut(s) 87
AfiI CCNNNNNNNGG 1 cut(s) 80
AluBI AGCT 3 cut(s) 14, 65, 218
AluI AGCT 3 cut(s) 14, 65, 218
Alw21I GWGCWC 1 cut(s) 163
Alw44I GTGCAC 1 cut(s) 159
AlwI GGATC 1 cut(s) 143
Aor51HI AGCGCT 1 cut(s) 87
AoxI GGCC 1 cut(s) 17
ApaI GGGCCC 1 cut(s) 21
ApaLI GTGCAC 1 cut(s) 159
AseI ATTAAT 1 cut(s) 45
AspLEI GCGC 1 cut(s) 88
AspS9I GGNCC 3 cut(s) 17, 18, 71
AvaII GGWCC 1 cut(s) 71
BaeGI GKGCMC 2 cut(s) 21, 163
BanII GRGCYC 1 cut(s) 21
BauI CACGAG 1 cut(s) 162
BbsI GAAGAC 1 cut(s) 150
Bbv12I GWGCWC 1 cut(s) 163
BccI CCATC 3 cut(s) 62, 104, 118
BfoI RGCGCY 1 cut(s) 89
Bme18I GGWCC 1 cut(s) 71
BmgT120I GGNCC 3 cut(s) 17, 18, 71
BmiI GGNNCC 1 cut(s) 19
BpiI GAAGAC 1 cut(s) 150
BplI GAGNNNNNCTC 2 cut(s) 132, 164
BsaXI ACNNNNNCTCC 2 cut(s) 75, 105
Bsc4I CCNNNNNNNGG 1 cut(s) 80
Bse3DI GCAATG 1 cut(s) 249
BseGI GGATG 1 cut(s) 228
BseLI CCNNNNNNNGG 1 cut(s) 80
BseMI GCAATG 1 cut(s) 249
BseSI GKGCMC 2 cut(s) 21, 163
BseYI CCCAGC 2 cut(s) 14, 218
BshFI GGCC 1 cut(s) 19
BsiHKAI GWGCWC 1 cut(s) 163
BslI CCNNNNNNNGG 1 cut(s) 80
BsnI GGCC 1 cut(s) 19
Bsp120I GGGCCC 1 cut(s) 17
Bsp1286I GDGCHC 2 cut(s) 21, 163
Bsp143I GATC 1 cut(s) 135
BspANI GGCC 1 cut(s) 19
BspLI GGNNCC 1 cut(s) 19
BspPI GGATC 1 cut(s) 143
BsrDI GCAATG 1 cut(s) 249
BssMI GATC 1 cut(s) 135
BssSI CACGAG 1 cut(s) 162
Bst2BI CACGAG 1 cut(s) 162
Bst4CI ACNGT 1 cut(s) 188
BstC8I GCNNGC 1 cut(s) 100
BstDEI CTNAG 1 cut(s) 22
BstF5I GGATG 1 cut(s) 228
BstH2I RGCGCY 1 cut(s) 89
BstHHI GCGC 1 cut(s) 88
BstKTI GATC 1 cut(s) 138
BstMBI GATC 1 cut(s) 135
BstSLI GKGCMC 2 cut(s) 21, 163
BstV2I GAAGAC 1 cut(s) 150
BsuRI GGCC 1 cut(s) 19
BtsCI GGATG 1 cut(s) 228
BtsIMutI CAGTG 1 cut(s) 184
Cac8I GCNNGC 1 cut(s) 100
CfoI GCGC 1 cut(s) 88
Cfr13I GGNCC 3 cut(s) 17, 18, 71
CviAII CATG 1 cut(s) 211
CviJI RGCY 5 cut(s) 14, 19, 38, 65, 218
CviKI_1 RGCY 5 cut(s) 14, 19, 38, 65, 218
DdeI CTNAG 1 cut(s) 22
DpnI GATC 1 cut(s) 137
DpnII GATC 1 cut(s) 135
Eco24I GRGCYC 1 cut(s) 21
Eco47I GGWCC 1 cut(s) 71
Eco47III AGCGCT 1 cut(s) 87
EcoO109I RGGNCCY 1 cut(s) 18
EcoT38I GRGCYC 1 cut(s) 21
FaeI CATG 1 cut(s) 214
FaiI YATR 5 cut(s) 6, 203, 208, 212, 252
FatI CATG 1 cut(s) 210
FokI GGATG 1 cut(s) 235
FriOI GRGCYC 1 cut(s) 21
GlaI GCGC 1 cut(s) 87
GsaI CCCAGC 2 cut(s) 18, 222
HaeII RGCGCY 1 cut(s) 89
HaeIII GGCC 1 cut(s) 19
HhaI GCGC 1 cut(s) 88
Hin1II CATG 1 cut(s) 214
Hin6I GCGC 1 cut(s) 86
HinP1I GCGC 1 cut(s) 86
HinfI GANTC 1 cut(s) 226
Hpy166II GTNNAC 1 cut(s) 161
Hpy188I TCNGA 1 cut(s) 140
Hpy8I GTNNAC 1 cut(s) 161
HpyCH4III ACNGT 1 cut(s) 188
HpyCH4V TGCA 4 cut(s) 102, 153, 161, 242
HpyF3I CTNAG 1 cut(s) 22
Hsp92II CATG 1 cut(s) 214
HspAI GCGC 1 cut(s) 86
Kzo9I GATC 1 cut(s) 135
LmnI GCTCC 1 cut(s) 83
LpnPI CCDG 3 cut(s) 74, 87, 204
MalI GATC 1 cut(s) 137
MboI GATC 1 cut(s) 135
MboII GAAGA 1 cut(s) 155
MhlI GDGCHC 2 cut(s) 21, 163
MluCI AATT 1 cut(s) 105
MnlI CCTC 4 cut(s) 19, 28, 126, 158
MseI TTAA 2 cut(s) 45, 93
NdeII GATC 1 cut(s) 135
NlaIII CATG 1 cut(s) 214
NlaIV GGNNCC 1 cut(s) 19
PfeI GAWTC 1 cut(s) 226
PshBI ATTAAT 1 cut(s) 45
PspFI CCCAGC 2 cut(s) 14, 218
PspN4I GGNNCC 1 cut(s) 19
PspOMI GGGCCC 1 cut(s) 17
PspPI GGNCC 3 cut(s) 17, 18, 71
SaqAI TTAA 2 cut(s) 45, 93
Sau3AI GATC 1 cut(s) 135
Sau96I GGNCC 3 cut(s) 17, 18, 71
SduI GDGCHC 2 cut(s) 21, 163
SetI ASST 4 cut(s) 16, 67, 150, 220
SgeI CNNG 9 cut(s) 23, 27, 86, 101, 111, 174, 176, 223, 231
SinI GGWCC 1 cut(s) 71
Sse9I AATT 1 cut(s) 105
TaaI ACNGT 1 cut(s) 188
TaqI TCGA 1 cut(s) 10
TasI AATT 1 cut(s) 105
TfiI GAWTC 1 cut(s) 226
Tru1I TTAA 2 cut(s) 45, 93
Tru9I TTAA 2 cut(s) 45, 93
TscAI CASTG 1 cut(s) 191
TspDTI ATGAA 2 cut(s) 63, 260
TspRI CASTG 1 cut(s) 191
VneI GTGCAC 1 cut(s) 159
VpaK11BI GGWCC 1 cut(s) 71
VspI ATTAAT 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.