RLG00000001323

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001684
Physical Location & Seq
Forward (+)
14126106 .. 14129018
2913 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001323

Sequence Viewer

Length: 1140 bp
ATGATTTCGGGTCTTTCCAAGTGTGGGTTTGTGGAGGAAGCCATTGTGAAGTTTATGTCCATGGACGTGAAGCCTAATTCTACTACTCTTGTGACTGTTTTGTCTTCTTGTTCTACTTTAAGAGCTTTGAAATTTGGTAAAGCTGTTCATGGCCATTTTTTGAGGAACTTTCAGGAAAGGAATTTGATTTTGGACAATGCCGTTTTGGATTTCTATCTGAGATGTGGATCTTTGGCGAGTGCAAGACACCTGTTTGTCAACATGCCTAAGAGAGATGTGGTTTCTTGGACTAGCATGGTGGGTGGTTATGCACAAAGAGGTTTTTGTGAAGAGGCAGTGAAACTTTTCCAACAACTGCTGCAGGGTGGAGAAGCTGAGCCTAATGAGGCTACCATTGTCAATGTATTGTCAGCATGTTCTTCGATTTGTGCATTAAGTTCAGGCCAGCAGGTGCATTCCTATATCAGTACTCGACGAGATCTCATGGCGAATGGCAATGTGGGGAATGCTTTAATCAATATGTATGTGAAGTGTGGAAACTTGGAAATGGCTATCTCAGTTTTTCAGTCCCTGGGGCACAAAGATACCATTTCATGGAGTACCATAATATGCGGCATGGCCATGAATGGCCATGGCATACACGTGTTGCAGCTCTTTTCCAGTATGCTAGTGAATGGGGTGTCTCCGGATGGTGTAACCTTCCTCGGGTTGTTATCAGCATGCAGTCATGCTGGCCTGGTAAATCAAGGGTTGATGTTCTTCAATGCTATGAAGAAAGTTTACCGGATTGTCCCTGAAACACAGCATTATGCGTGTCTGGTTGATATGTATGGTCGAGCTGGGCTATTAGAGGAAGCAGAAGCTTTTATTAAAGAAATGCCAACAGAAGCTGATGGTCCTGTTTGGGGAGCGCTGCTTAATGCTTGTAAAATCTATGGGAATGAGGAGATGGTTGAGAGGATCAGAGAAGGCCTCCGCAATAGGGCAGGAGTGAGCACCGGAACTTATGCTCTGTTATCAAATGCTTATGCTAAACATGATAGGTGGGATGATTCTAATAAGGTTCGTGATGAAATGAGAGAGATGGGGTTGAAGGCACCACCAGGTCGTAGTTGGATTGAAATTGGTCTGTCCATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

380

Amino Acids

41.57

Weight (kDa)

7.12

Isoelectric Point (pI)

41.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR PF01535 94 - 121 2.6e-06 PPR repeat
PPR_2 PF13041 194 - 242 8.7e-08 PPR repeat family
E_motif PF20431 332 - 374 4.1e-10 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 439
AasI GACNNNNNNGTC 1 cut(s) 100
Acc36I ACCTGC 1 cut(s) 439
AccB1I GGYRCC 1 cut(s) 1096
AccB7I CCANNNNNTGG 1 cut(s) 594
AccIII TCCGGA 1 cut(s) 685
AciI CCGC 2 cut(s) 612, 976
AclWI GGATC 2 cut(s) 235, 968
AcoI YGGCCR 3 cut(s) 151, 618, 628
AcsI RAATTY 2 cut(s) 131, 181
AcvI CACGTG 1 cut(s) 643
AfaI GTAC 2 cut(s) 469, 601
AfeI AGCGCT 1 cut(s) 912
AfiI CCNNNNNNNGG 5 cut(s) 24, 594, 705, 905, 982
AflIII ACRYGT 2 cut(s) 640, 642
AgsI TTSAA 4 cut(s) 130, 763, 1093, 1121
AjiI CACGTC 1 cut(s) 67
AjnI CCWGG 3 cut(s) 570, 735, 1102
AjuI GAANNNNNNNTTGG 2 cut(s) 173, 205
AluBI AGCT 7 cut(s) 125, 143, 374, 652, 839, 863, 890
AluI AGCT 7 cut(s) 125, 143, 374, 652, 839, 863, 890
Alw21I GWGCWC 1 cut(s) 998
Alw26I GTCTC 1 cut(s) 687
AlwI GGATC 2 cut(s) 235, 968
AlwNI CAGNNNCTG 2 cut(s) 571, 890
Ama87I CYCGRG 1 cut(s) 704
Aor13HI TCCGGA 1 cut(s) 685
Aor51HI AGCGCT 1 cut(s) 912
AoxI GGCC 6 cut(s) 151, 442, 618, 628, 733, 970
ApeKI GCWGC 3 cut(s) 358, 649, 913
ApoI RAATTY 2 cut(s) 131, 181
Asp700I GAANNNNTTC 1 cut(s) 344
AspLEI GCGC 1 cut(s) 913
AspS9I GGNCC 1 cut(s) 896
AvaI CYCGRG 1 cut(s) 704
AvaII GGWCC 1 cut(s) 896
BaeGI GKGCMC 1 cut(s) 579
BalI TGGCCA 3 cut(s) 153, 620, 630
BanI GGYRCC 1 cut(s) 1096
BarI GAAGNNNNNNTAC 2 cut(s) 764, 796
BbrPI CACGTG 1 cut(s) 643
BbsI GAAGAC 1 cut(s) 96
Bbv12I GWGCWC 1 cut(s) 998
BbvI GCAGC 3 cut(s) 345, 661, 900
BccI CCATC 4 cut(s) 683, 887, 943, 1078
BceAI ACGGC 1 cut(s) 185
BcgI CGANNNNNNTGC 2 cut(s) 402, 436
BciT130I CCWGG 3 cut(s) 572, 737, 1104
BcoDI GTCTC 1 cut(s) 687
BfaI CTAG 2 cut(s) 291, 668
BfmI CTRYAG 1 cut(s) 359
BfoI RGCGCY 1 cut(s) 914
BfuAI ACCTGC 1 cut(s) 439
BglII AGATCT 1 cut(s) 478
BisI GCNGC 4 cut(s) 359, 613, 650, 914
BlpI GCTNAGC 1 cut(s) 375
BlsI GCNGC 4 cut(s) 360, 614, 651, 915
BmcAI AGTACT 1 cut(s) 469
Bme1390I CCNGG 3 cut(s) 572, 737, 1104
Bme18I GGWCC 1 cut(s) 896
BmeT110I CYCGRG 1 cut(s) 704
BmgBI CACGTC 1 cut(s) 67
BmgT120I GGNCC 1 cut(s) 896
BmiI GGNNCC 1 cut(s) 1098
BmrFI CCNGG 3 cut(s) 572, 737, 1104
BpiI GAAGAC 1 cut(s) 96
BplI GAGNNNNNCTC 2 cut(s) 957, 989
Bpu1102I GCTNAGC 1 cut(s) 375
BsaAI YACGTR 1 cut(s) 643
BsaBI GATNNNNATC 2 cut(s) 213, 226
BsaJI CCNNGG 5 cut(s) 60, 570, 571, 631, 703
BsaWI WCCGGW 3 cut(s) 685, 783, 998
Bsc4I CCNNNNNNNGG 5 cut(s) 24, 594, 705, 905, 982
Bse1I ACTGG 1 cut(s) 660
Bse3DI GCAATG 1 cut(s) 502
Bse8I GATNNNNATC 2 cut(s) 213, 226
BseAI TCCGGA 1 cut(s) 685
BseBI CCWGG 3 cut(s) 572, 737, 1104
BseDI CCNNGG 5 cut(s) 60, 570, 571, 631, 703
BseGI GGATG 2 cut(s) 694, 1054
BseJI GATNNNNATC 2 cut(s) 213, 226
BseLI CCNNNNNNNGG 5 cut(s) 24, 594, 705, 905, 982
BseMI GCAATG 1 cut(s) 502
BseMII CTCAG 3 cut(s) 209, 366, 570
BseNI ACTGG 1 cut(s) 660
BseRI GAGGAG 1 cut(s) 959
BseSI GKGCMC 1 cut(s) 579
BseXI GCAGC 3 cut(s) 345, 661, 900
BseYI CCCAGC 1 cut(s) 839
BshFI GGCC 6 cut(s) 153, 444, 620, 630, 735, 972
BshNI GGYRCC 1 cut(s) 1096
BsiHKAI GWGCWC 1 cut(s) 998
BsiHKCI CYCGRG 1 cut(s) 704
BsiSI CCGG 3 cut(s) 686, 784, 999
BslFI GGGAC 2 cut(s) 553, 776
BslI CCNNNNNNNGG 5 cut(s) 24, 594, 705, 905, 982
BsmAI GTCTC 1 cut(s) 687
BsmFI GGGAC 2 cut(s) 553, 776
BsmI GAATGC 2 cut(s) 454, 511
BsnI GGCC 6 cut(s) 153, 444, 620, 630, 735, 972
BsoBI CYCGRG 1 cut(s) 704
Bsp1286I GDGCHC 2 cut(s) 579, 998
Bsp13I TCCGGA 1 cut(s) 685
Bsp143I GATC 3 cut(s) 227, 478, 960
Bsp1720I GCTNAGC 1 cut(s) 375
Bsp19I CCATGG 2 cut(s) 60, 631
BspACI CCGC 2 cut(s) 612, 976
BspANI GGCC 6 cut(s) 153, 444, 620, 630, 735, 972
BspCNI CTCAG 3 cut(s) 210, 367, 569
BspEI TCCGGA 1 cut(s) 685
BspLI GGNNCC 1 cut(s) 1098
BspMAI CTGCAG 1 cut(s) 363
BspMI ACCTGC 1 cut(s) 439
BspPI GGATC 2 cut(s) 235, 968
BspT107I GGYRCC 1 cut(s) 1096
BsrDI GCAATG 1 cut(s) 502
BsrI ACTGG 1 cut(s) 660
BssECI CCNNGG 5 cut(s) 60, 570, 571, 631, 703
BssMI GATC 3 cut(s) 227, 478, 960
BssT1I CCWWGG 2 cut(s) 60, 631
Bst2UI CCWGG 3 cut(s) 572, 737, 1104
Bst4CI ACNGT 1 cut(s) 97
Bst6I CTCTTC 1 cut(s) 324
BstBAI YACGTR 1 cut(s) 643
BstC8I GCNNGC 3 cut(s) 446, 721, 733
BstDEI CTNAG 4 cut(s) 218, 267, 375, 556
BstDSI CCRYGG 2 cut(s) 60, 631
BstF5I GGATG 2 cut(s) 694, 1054
BstH2I RGCGCY 1 cut(s) 914
BstHHI GCGC 1 cut(s) 913
BstKTI GATC 3 cut(s) 230, 481, 963
BstMAI GTCTC 1 cut(s) 687
BstMBI GATC 3 cut(s) 227, 478, 960
BstNI CCWGG 3 cut(s) 572, 737, 1104
BstNSI RCATGY 3 cut(s) 265, 417, 723
BstSCI CCNGG 3 cut(s) 570, 735, 1102
BstSFI CTRYAG 1 cut(s) 359
BstSLI GKGCMC 1 cut(s) 579
BstV1I GCAGC 3 cut(s) 345, 661, 900
BstV2I GAAGAC 1 cut(s) 96
BstX2I RGATCY 2 cut(s) 227, 478
BstYI RGATCY 2 cut(s) 227, 478
BsuRI GGCC 6 cut(s) 153, 444, 620, 630, 735, 972
BtgI CCRYGG 2 cut(s) 60, 631
BtrI CACGTC 1 cut(s) 67
BtsCI GGATG 2 cut(s) 694, 1054
BtsI GCAGTG 1 cut(s) 342
BtsIMutI CAGTG 1 cut(s) 342
BveI ACCTGC 1 cut(s) 439
Cac8I GCNNGC 3 cut(s) 446, 721, 733
CaiI CAGNNNCTG 2 cut(s) 571, 890
CfoI GCGC 1 cut(s) 913
Cfr13I GGNCC 1 cut(s) 896
CsiI ACCWGGT 1 cut(s) 1102
Csp6I GTAC 2 cut(s) 468, 600
CviQI GTAC 2 cut(s) 468, 600
DdeI CTNAG 4 cut(s) 218, 267, 375, 556
DpnI GATC 3 cut(s) 229, 480, 962
DpnII GATC 3 cut(s) 227, 478, 960
DrdI GACNNNNNNGTC 1 cut(s) 100
DseDI GACNNNNNNGTC 1 cut(s) 100
EaeI YGGCCR 3 cut(s) 151, 618, 628
Eam1104I CTCTTC 1 cut(s) 324
EarI CTCTTC 1 cut(s) 324
Eco130I CCWWGG 2 cut(s) 60, 631
Eco147I AGGCCT 1 cut(s) 972
Eco47I GGWCC 1 cut(s) 896
Eco47III AGCGCT 1 cut(s) 912
Eco72I CACGTG 1 cut(s) 643
Eco88I CYCGRG 1 cut(s) 704
EcoRII CCWGG 3 cut(s) 570, 735, 1102
EcoT14I CCWWGG 2 cut(s) 60, 631
ErhI CCWWGG 2 cut(s) 60, 631
FaqI GGGAC 2 cut(s) 553, 776
Fnu4HI GCNGC 4 cut(s) 359, 613, 650, 914
FokI GGATG 2 cut(s) 701, 1061
Fsp4HI GCNGC 4 cut(s) 359, 613, 650, 914
FspBI CTAG 2 cut(s) 291, 668
GlaI GCGC 1 cut(s) 912
GluI GCNGC 4 cut(s) 359, 613, 650, 914
GsaI CCCAGC 1 cut(s) 843
HaeII RGCGCY 1 cut(s) 914
HaeIII GGCC 6 cut(s) 153, 444, 620, 630, 735, 972
HapII CCGG 3 cut(s) 686, 784, 999
HhaI GCGC 1 cut(s) 913
Hin6I GCGC 1 cut(s) 911
HinP1I GCGC 1 cut(s) 911
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HindIII AAGCTT 1 cut(s) 861
HinfI GANTC 1 cut(s) 1052
HpaII CCGG 3 cut(s) 686, 784, 999
Hpy166II GTNNAC 2 cut(s) 259, 781
Hpy188I TCNGA 2 cut(s) 219, 965
Hpy188III TCNNGA 3 cut(s) 173, 686, 1067
Hpy8I GTNNAC 2 cut(s) 259, 781
Hpy99I CGWCG 1 cut(s) 477
HpyAV CCTTC 3 cut(s) 709, 962, 1087
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4IV ACGT 2 cut(s) 66, 642
HpyCH4V TGCA 7 cut(s) 242, 311, 361, 431, 454, 649, 723
HpyF3I CTNAG 4 cut(s) 218, 267, 375, 556
HpySE526I ACGT 2 cut(s) 66, 642
HspAI GCGC 1 cut(s) 911
Kpn2I TCCGGA 1 cut(s) 685
Kzo9I GATC 3 cut(s) 227, 478, 960
LmnI GCTCC 1 cut(s) 908
Lsp1109I GCAGC 3 cut(s) 345, 661, 900
MabI ACCWGGT 1 cut(s) 1102
MaeI CTAG 2 cut(s) 291, 668
MaeII ACGT 2 cut(s) 66, 642
MaeIII GTNAC 2 cut(s) 91, 694
MalI GATC 3 cut(s) 229, 480, 962
MboI GATC 3 cut(s) 227, 478, 960
MboII GAAGA 5 cut(s) 96, 341, 411, 751, 784
MflI RGATCY 2 cut(s) 227, 478
MhlI GDGCHC 2 cut(s) 579, 998
MlsI TGGCCA 3 cut(s) 153, 620, 630
MluCI AATT 4 cut(s) 76, 131, 181, 1122
MluNI TGGCCA 3 cut(s) 153, 620, 630
MmeI TCCRAC 2 cut(s) 373, 1094
Mox20I TGGCCA 3 cut(s) 153, 620, 630
MroI TCCGGA 1 cut(s) 685
MroXI GAANNNNTTC 1 cut(s) 344
MscI TGGCCA 3 cut(s) 153, 620, 630
MseI TTAA 5 cut(s) 119, 434, 512, 870, 918
MslI CAYNNNNRTG 3 cut(s) 65, 620, 641
Msp20I TGGCCA 3 cut(s) 153, 620, 630
MspI CCGG 3 cut(s) 686, 784, 999
MspR9I CCNGG 3 cut(s) 572, 737, 1104
Mva1269I GAATGC 2 cut(s) 454, 511
MvaI CCWGG 3 cut(s) 572, 737, 1104
NcoI CCATGG 2 cut(s) 60, 631
NdeII GATC 3 cut(s) 227, 478, 960
NlaIV GGNNCC 1 cut(s) 1098
NmuCI GTSAC 1 cut(s) 91
NspI RCATGY 3 cut(s) 265, 417, 723
PaeI GCATGC 1 cut(s) 723
PaqCI CACCTGC 1 cut(s) 439
PasI CCCWGGG 1 cut(s) 571
PceI AGGCCT 1 cut(s) 972
PctI GAATGC 2 cut(s) 454, 511
PdmI GAANNNNTTC 1 cut(s) 344
PfeI GAWTC 1 cut(s) 1052
PflMI CCANNNNNTGG 1 cut(s) 594
PkrI GCNGC 4 cut(s) 360, 614, 651, 915
PmaCI CACGTG 1 cut(s) 643
PmlI CACGTG 1 cut(s) 643
Ppu21I YACGTR 1 cut(s) 643
Psp6I CCWGG 3 cut(s) 570, 735, 1102
PspCI CACGTG 1 cut(s) 643
PspFI CCCAGC 1 cut(s) 839
PspGI CCWGG 3 cut(s) 570, 735, 1102
PspN4I GGNNCC 1 cut(s) 1098
PspPI GGNCC 1 cut(s) 896
PstI CTGCAG 1 cut(s) 363
PstNI CAGNNNCTG 2 cut(s) 571, 890
PsuI RGATCY 2 cut(s) 227, 478
RsaI GTAC 2 cut(s) 469, 601
RsaNI GTAC 2 cut(s) 468, 600
RseI CAYNNNNRTG 3 cut(s) 65, 620, 641
SaqAI TTAA 5 cut(s) 119, 434, 512, 870, 918
SatI GCNGC 4 cut(s) 359, 613, 650, 914
Sau3AI GATC 3 cut(s) 227, 478, 960
Sau96I GGNCC 1 cut(s) 896
ScaI AGTACT 1 cut(s) 469
ScrFI CCNGG 3 cut(s) 572, 737, 1104
SduI GDGCHC 2 cut(s) 579, 998
SexAI ACCWGGT 1 cut(s) 1102
SfcI CTRYAG 1 cut(s) 359
SinI GGWCC 1 cut(s) 896
SmiMI CAYNNNNRTG 3 cut(s) 65, 620, 641
SphI GCATGC 1 cut(s) 723
Sse9I AATT 4 cut(s) 76, 131, 181, 1122
SseBI AGGCCT 1 cut(s) 972
SsiI CCGC 2 cut(s) 612, 976
SspMI CTAG 2 cut(s) 291, 668
StuI AGGCCT 1 cut(s) 972
StyD4I CCNGG 3 cut(s) 570, 735, 1102
StyI CCWWGG 2 cut(s) 60, 631
TaaI ACNGT 1 cut(s) 97
TaiI ACGT 2 cut(s) 69, 645
TaqI TCGA 3 cut(s) 422, 472, 835
TasI AATT 4 cut(s) 76, 131, 181, 1122
TatI WGTACW 1 cut(s) 467
TauI GCSGC 1 cut(s) 615
TfiI GAWTC 1 cut(s) 1052
Tru1I TTAA 5 cut(s) 119, 434, 512, 870, 918
Tru9I TTAA 5 cut(s) 119, 434, 512, 870, 918
TscAI CASTG 1 cut(s) 342
TseFI GTSAC 1 cut(s) 91
TseI GCWGC 3 cut(s) 358, 649, 913
Tsp45I GTSAC 1 cut(s) 91
TspDTI ATGAA 5 cut(s) 137, 582, 638, 785, 1086
TspRI CASTG 1 cut(s) 342
Van91I CCANNNNNTGG 1 cut(s) 594
VpaK11BI GGWCC 1 cut(s) 896
XapI RAATTY 2 cut(s) 131, 181
XceI RCATGY 3 cut(s) 265, 417, 723
XcmI CCANNNNNNNNNTGG 1 cut(s) 1110
XmnI GAANNNNTTC 1 cut(s) 344
XspI CTAG 2 cut(s) 291, 668
ZrmI AGTACT 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.