Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000980

Physical Location & Seq

Genomic Coordinates Reverse (-)

5361405 .. 5362654

Gene Structure 1250 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g09064.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGCGTCTTTATCCACCTTCAGCAATAAACGGCAAGGAAGCTTTAGAAAACATGAAACTAGGGAACCTTAATGTGCCTAAAAGCACCATCGTATGGGTCTTCATACCCAGATTGTATTATGACCTAGAAAATTGGGGGCCTCATGCTGATGAGTTCAAGCCAGAAGGATTTGCGGATGGGGTTTCCAAATTATGCAAGTATCCTGCTGCATATGCTTCATTCGGTTTCGGGACCCGGATTTACCTAGGCCAAAATTTTGCTATGGCTCAAATAAAGATCATACTTTCCGTACTCCTATCCAGGTTCTCATTTTCCATTTCCCCAAATTATGAGCATTGTCCTAAATATGGAATGACACTCAATCCTGGTCATGGAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

127

Amino Acids

14.17

Weight (kDa)

8.89

Isoelectric Point (pI)

15.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	1 - 116	5.6e-22	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000980)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g09064 FvH4_6g09311 FvH4_6g09311 FvH4_6g09320 FvH4_6g09321
malus_domestica	MD04G1178700.v1.1 MD04G1178800.v1.1
prunus_persica	Prupe.6G298600_v2.0.a1 Prupe.6G298700_v2.0.a1 Prupe.6G298700_v2.0.a1
pyrus_communis	pycom04g15800 pycom07g07860
rosa_chinensis	RchiOBHm_Chr1g0344961 RchiOBHm_Chr1g0345061 RchiOBHm_Chr3g0459711 RchiOBHm_Chr3g0459721 RchiOBHm_Chr3g0459861 RchiOBHm_Chr3g0459871 RchiOBHm_Chr7g0204441
rosa_laevigata	RLG00000003461 RLG00000025055 RLG00000025064 RLG00000025065
rosa_multiflora	Rmu_sc0000240.1_g000030 Rmu_sc0000240.1_g000031 Rmu_sc0000240.1_g000041 Rmu_sc0000240.1_g000042 Rmu_ssc0000443.1_g000007
rosa_roxburghii	Rroxscaffold_3G00253100 Rroxscaffold_4G00309460 Rroxscaffold_6G00419950 Rroxscaffold_6G00420030 Rroxscaffold_6G00420040 Rroxscaffold_6G00420050
rosa_rugosa	Rorug01G0374300 Rorug03G0037700 Rorug03G0037800 Rorug03G0038100 Rorug03G0038100 Rorug07G0084000 Rorug07G0084000 Rorug07G0084100
rosa_samantha	Rh2AG299100 Rh2DG322700 Rh2DG322800 Rh3AG096200 Rh3AG096300 Rh3AG097200 Rh3BG098900 Rh3BG099000 Rh3BG099900 Rh3CG100800 Rh3CG100900 Rh3CG101700 Rh3CG101800 Rh3DG100200 Rh3DG101400 Rh3DG101500 Rh7AG213700 Rh7BG211500 Rh7CG226500 Rh7DG220900
rosa_wichuraiana	Rw7G018520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	93
AciI	CCGC	1 cut(s)	173
AcsI	RAATTY	1 cut(s)	253
AfaI	GTAC	1 cut(s)	291
AfiI	CCNNNNNNNGG	3 cut(s)	93, 347, 371
AgsI	TTSAA	1 cut(s)	157
AjnI	CCWGG	2 cut(s)	299, 364
AluBI	AGCT	1 cut(s)	41
AluI	AGCT	1 cut(s)	41
AoxI	GGCC	2 cut(s)	137, 247
ApeKI	GCWGC	1 cut(s)	206
ApoI	RAATTY	1 cut(s)	253
AspA2I	CCTAGG	1 cut(s)	244
AspS9I	GGNCC	2 cut(s)	137, 231
AsuC2I	CCSGG	1 cut(s)	235
AvaII	GGWCC	1 cut(s)	231
AvrII	CCTAGG	1 cut(s)	244
BbsI	GAAGAC	1 cut(s)	91
BbvI	GCAGC	1 cut(s)	193
BccI	CCATC	2 cut(s)	95, 170
BceAI	ACGGC	1 cut(s)	46
BciT130I	CCWGG	2 cut(s)	301, 366
BciVI	GTATCC	1 cut(s)	210
BcnI	CCSGG	1 cut(s)	235
BfaI	CTAG	3 cut(s)	59, 125, 245
BfuI	GTATCC	1 cut(s)	210
BisI	GCNGC	1 cut(s)	207
BlnI	CCTAGG	1 cut(s)	244
BlsI	GCNGC	1 cut(s)	208
Bme1390I	CCNGG	3 cut(s)	235, 301, 366
Bme18I	GGWCC	1 cut(s)	231
BmgT120I	GGNCC	2 cut(s)	137, 231
BmiI	GGNNCC	4 cut(s)	65, 138, 232, 233
BmrFI	CCNGG	3 cut(s)	235, 301, 366
BpiI	GAAGAC	1 cut(s)	91
BpuMI	CCSGG	1 cut(s)	235
BsaJI	CCNNGG	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	3 cut(s)	93, 347, 371
BseBI	CCWGG	2 cut(s)	301, 366
BseDI	CCNNGG	1 cut(s)	244
BseGI	GGATG	1 cut(s)	181
BseLI	CCNNNNNNNGG	3 cut(s)	93, 347, 371
BseXI	GCAGC	1 cut(s)	193
BshFI	GGCC	2 cut(s)	139, 249
BsiSI	CCGG	1 cut(s)	235
BslFI	GGGAC	1 cut(s)	244
BslI	CCNNNNNNNGG	3 cut(s)	93, 347, 371
BsmFI	GGGAC	1 cut(s)	244
BsnI	GGCC	2 cut(s)	139, 249
Bsp143I	GATC	1 cut(s)	276
BspACI	CCGC	1 cut(s)	173
BspANI	GGCC	2 cut(s)	139, 249
BspLI	GGNNCC	4 cut(s)	65, 138, 232, 233
BssECI	CCNNGG	1 cut(s)	244
BssMI	GATC	1 cut(s)	276
BssT1I	CCWWGG	1 cut(s)	244
Bst2UI	CCWGG	2 cut(s)	301, 366
BstF5I	GGATG	1 cut(s)	181
BstKTI	GATC	1 cut(s)	279
BstMBI	GATC	1 cut(s)	276
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstNI	CCWGG	2 cut(s)	301, 366
BstSCI	CCNGG	3 cut(s)	233, 299, 364
BstV1I	GCAGC	1 cut(s)	193
BstV2I	GAAGAC	1 cut(s)	91
BsuI	GTATCC	1 cut(s)	210
BsuRI	GGCC	2 cut(s)	139, 249
BtsCI	GGATG	1 cut(s)	181
Cfr13I	GGNCC	2 cut(s)	137, 231
Csp6I	GTAC	1 cut(s)	290
CviAII	CATG	3 cut(s)	52, 143, 371
CviJI	RGCY	5 cut(s)	41, 139, 160, 249, 266
CviKI_1	RGCY	5 cut(s)	41, 139, 160, 249, 266
CviQI	GTAC	1 cut(s)	290
DpnI	GATC	1 cut(s)	278
DpnII	GATC	1 cut(s)	276
Eco130I	CCWWGG	1 cut(s)	244
Eco47I	GGWCC	1 cut(s)	231
EcoO109I	RGGNCCY	2 cut(s)	137, 231
EcoRII	CCWGG	2 cut(s)	299, 364
EcoT14I	CCWWGG	1 cut(s)	244
ErhI	CCWWGG	1 cut(s)	244
FaeI	CATG	3 cut(s)	55, 146, 374
FaqI	GGGAC	1 cut(s)	244
FatI	CATG	3 cut(s)	51, 142, 370
FauNDI	CATATG	1 cut(s)	211
Fnu4HI	GCNGC	1 cut(s)	207
FokI	GGATG	1 cut(s)	188
Fsp4HI	GCNGC	1 cut(s)	207
FspBI	CTAG	3 cut(s)	59, 125, 245
GluI	GCNGC	1 cut(s)	207
HaeIII	GGCC	2 cut(s)	139, 249
HapII	CCGG	1 cut(s)	235
Hin1II	CATG	3 cut(s)	55, 146, 374
HindIII	AAGCTT	1 cut(s)	39
HpaII	CCGG	1 cut(s)	235
Hpy188III	TCNNGA	1 cut(s)	229
HpyAV	CCTTC	2 cut(s)	27, 158
HpyCH4V	TGCA	2 cut(s)	195, 209
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
Hsp92II	CATG	3 cut(s)	55, 146, 374
KflI	GGGWCCC	1 cut(s)	231
Kzo9I	GATC	1 cut(s)	276
LpnPI	CCDG	7 cut(s)	121, 174, 216, 248, 286, 313, 351
Lsp1109I	GCAGC	1 cut(s)	193
MaeI	CTAG	3 cut(s)	59, 125, 245
MalI	GATC	1 cut(s)	278
MboI	GATC	1 cut(s)	276
MboII	GAAGA	1 cut(s)	91
MluCI	AATT	4 cut(s)	130, 188, 253, 325
MnlI	CCTC	1 cut(s)	150
MseI	TTAA	1 cut(s)	69
MslI	CAYNNNNRTG	1 cut(s)	147
MspI	CCGG	1 cut(s)	235
MspR9I	CCNGG	3 cut(s)	235, 301, 366
MvaI	CCWGG	2 cut(s)	301, 366
MwoI	GCNNNNNNNGC	1 cut(s)	212
NciI	CCSGG	1 cut(s)	235
NdeI	CATATG	1 cut(s)	211
NdeII	GATC	1 cut(s)	276
NlaIII	CATG	3 cut(s)	55, 146, 374
NlaIV	GGNNCC	4 cut(s)	65, 138, 232, 233
PflMI	CCANNNNNTGG	1 cut(s)	93
PkrI	GCNGC	1 cut(s)	208
PpuMI	RGGWCCY	1 cut(s)	231
Psp5II	RGGWCCY	1 cut(s)	231
Psp6I	CCWGG	2 cut(s)	299, 364
PspGI	CCWGG	2 cut(s)	299, 364
PspN4I	GGNNCC	4 cut(s)	65, 138, 232, 233
PspPI	GGNCC	2 cut(s)	137, 231
PspPPI	RGGWCCY	1 cut(s)	231
RsaI	GTAC	1 cut(s)	291
RsaNI	GTAC	1 cut(s)	290
RseI	CAYNNNNRTG	1 cut(s)	147
SaqAI	TTAA	1 cut(s)	69
SatI	GCNGC	1 cut(s)	207
Sau3AI	GATC	1 cut(s)	276
Sau96I	GGNCC	2 cut(s)	137, 231
ScrFI	CCNGG	3 cut(s)	235, 301, 366
SetI	ASST	6 cut(s)	19, 43, 69, 126, 246, 305
SinI	GGWCC	1 cut(s)	231
SmiMI	CAYNNNNRTG	1 cut(s)	147
Sse9I	AATT	4 cut(s)	130, 188, 253, 325
SsiI	CCGC	1 cut(s)	173
SspMI	CTAG	3 cut(s)	59, 125, 245
StyD4I	CCNGG	3 cut(s)	233, 299, 364
StyI	CCWWGG	1 cut(s)	244
TasI	AATT	4 cut(s)	130, 188, 253, 325
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TseI	GCWGC	1 cut(s)	206
TspDTI	ATGAA	3 cut(s)	68, 91, 207
TspGWI	ACGGA	1 cut(s)	277
Van91I	CCANNNNNTGG	1 cut(s)	93
VpaK11BI	GGWCC	1 cut(s)	231
XapI	RAATTY	1 cut(s)	253
XmaJI	CCTAGG	1 cut(s)	244
XspI	CTAG	3 cut(s)	59, 125, 245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.